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The map label for this gene is ydfH [C]

Identifier: 192290547

GI number: 192290547

Start: 2335366

End: 2336097

Strand: Reverse

Name: ydfH [C]

Synonym: Rpal_2156

Alternate gene names: 192290547

Gene position: 2336097-2335366 (Counterclockwise)

Preceding gene: 192290548

Following gene: 192290546

Centisome position: 40.67

GC content: 65.85

Gene sequence:

>732_bases
ATGATCGCGCGCGCCCGCCCCACTCCGAACGAGACGCCTGCCGAGCCCGAGCTCGGCATCATGCGGCTCGCGCCGGAGAC
CAGCTTCAAGACCAAGGCCTACGAGGCGCTGAAGCAGGCGATCCTGAAGATGGACATCTACACCACGCCCGAGCCGGTGA
TGCTCGACGAGCGCGCGCTGTCCGACAAGCTCGGCGTCAGCCGCACGCCGATCCGTGAAGCGATCGCGATGCTCGAACAG
GAAGGGCTGGTGAAGGCGGTGCCGCGCCGGGGCATCATCGTGGTGCGCCGGACCAAGGCGGAAATCGTCGACATGATCCG
CGCCTGGGCGGCGCTGGAGAGCATGGCGGCGCGGCTGATCACCATCGTGGCCCGCAAACGCGACATCGCCGCGCTGCGTG
ACGTGTTCAAGGAGTTCGGTCCCGACCGGCTGCCGCAGGATCACATCGAGGAATATTCCCGCGCCAACATCGTGTTCCAC
CAAACGCTGATCTCGCTCAGCGAGTCACCGGTGCTGGTCGACATGACCAACGACATCCTGATCCACGTTCGCGGCTATCG
CCAGCTCACCATCGGCCGCAAGGAGCGCATCGCCGCCTCACTGCCCGAGCATCTGGCGATGATCGAGGCGCTGGAAACAC
GCGACACCGAACTCGCCGAAAAGCTGGCGCGCGATCACACGCTGCGGCTGGCTGCTTACGTCGAGACCCACGGCCAGGAG
CTGTTCGCCTGA

Upstream 100 bases:

>100_bases
ACTCCGCGAACGCGAAAACCACCGTGAGAACGGCTTGACCGCTTGGCATCTGGTATGCCAGAGCAAGGTCGACGGCGGCC
ATTACCGCCTGAGGAACTCC

Downstream 100 bases:

>100_bases
CGCGGCGACGCTTGGCCGACGCGACATAACAAGGACGTTCGTCGCGGATCGCCGCGGCGGACGTACCGATGGGAGAGATG
CCGCTTCGGCGCGCAAGAGA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; Transcriptional Regulator Gntr Family; Regulatory Protein; GntR-Family Transcriptional Regulator; GntR Domain-Containing Protein; Regulatory Protein GntR HTHGntR C-Terminal Domain; FCD Domain Protein; Transcriptional Regulator Protein; GntR Family Regulatory Protein; Transcriptional Repressor MdcY; Mn-Dependent Transcriptional Regulator; Transcriptional Regulator GntR; Transcriptional Regulatory Protein; Transcriptional Regulatory Protein GntR Family; GntR Family Transcription Regulator; GntR Domain Protein; Naphthalene Degradation Regulatory Protein; Transcription Regulator; Regulator PutR For Proline Utilization GntR Family; Transcriptional Regulator GntR Family Protein; GntR Transcriptional Regulator GntR; GntR Family Transcription Regulator Protein

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MIARARPTPNETPAEPELGIMRLAPETSFKTKAYEALKQAILKMDIYTTPEPVMLDERALSDKLGVSRTPIREAIAMLEQ
EGLVKAVPRRGIIVVRRTKAEIVDMIRAWAALESMAARLITIVARKRDIAALRDVFKEFGPDRLPQDHIEEYSRANIVFH
QTLISLSESPVLVDMTNDILIHVRGYRQLTIGRKERIAASLPEHLAMIEALETRDTELAEKLARDHTLRLAAYVETHGQE
LFA

Sequences:

>Translated_243_residues
MIARARPTPNETPAEPELGIMRLAPETSFKTKAYEALKQAILKMDIYTTPEPVMLDERALSDKLGVSRTPIREAIAMLEQ
EGLVKAVPRRGIIVVRRTKAEIVDMIRAWAALESMAARLITIVARKRDIAALRDVFKEFGPDRLPQDHIEEYSRANIVFH
QTLISLSESPVLVDMTNDILIHVRGYRQLTIGRKERIAASLPEHLAMIEALETRDTELAEKLARDHTLRLAAYVETHGQE
LFA
>Mature_243_residues
MIARARPTPNETPAEPELGIMRLAPETSFKTKAYEALKQAILKMDIYTTPEPVMLDERALSDKLGVSRTPIREAIAMLEQ
EGLVKAVPRRGIIVVRRTKAEIVDMIRAWAALESMAARLITIVARKRDIAALRDVFKEFGPDRLPQDHIEEYSRANIVFH
QTLISLSESPVLVDMTNDILIHVRGYRQLTIGRKERIAASLPEHLAMIEALETRDTELAEKLARDHTLRLAAYVETHGQE
LFA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27468; Mature: 27468

Theoretical pI: Translated: 7.19; Mature: 7.19

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIARARPTPNETPAEPELGIMRLAPETSFKTKAYEALKQAILKMDIYTTPEPVMLDERAL
CCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEECHHHH
SDKLGVSRTPIREAIAMLEQEGLVKAVPRRGIIVVRRTKAEIVDMIRAWAALESMAARLI
HHHCCCCCCCHHHHHHHHHHCCHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHH
TIVARKRDIAALRDVFKEFGPDRLPQDHIEEYSRANIVFHQTLISLSESPVLVDMTNDIL
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEE
IHVRGYRQLTIGRKERIAASLPEHLAMIEALETRDTELAEKLARDHTLRLAAYVETHGQE
EEEECCEEECCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHH
LFA
HCC
>Mature Secondary Structure
MIARARPTPNETPAEPELGIMRLAPETSFKTKAYEALKQAILKMDIYTTPEPVMLDERAL
CCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEECHHHH
SDKLGVSRTPIREAIAMLEQEGLVKAVPRRGIIVVRRTKAEIVDMIRAWAALESMAARLI
HHHCCCCCCCHHHHHHHHHHCCHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHH
TIVARKRDIAALRDVFKEFGPDRLPQDHIEEYSRANIVFHQTLISLSESPVLVDMTNDIL
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEE
IHVRGYRQLTIGRKERIAASLPEHLAMIEALETRDTELAEKLARDHTLRLAAYVETHGQE
EEEECCEEECCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHH
LFA
HCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA