| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
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The map label for this gene is 192290336
Identifier: 192290336
GI number: 192290336
Start: 2096286
End: 2097125
Strand: Reverse
Name: 192290336
Synonym: Rpal_1943
Alternate gene names: NA
Gene position: 2097125-2096286 (Counterclockwise)
Preceding gene: 192290337
Following gene: 192290334
Centisome position: 36.51
GC content: 68.69
Gene sequence:
>840_bases ATGAAGGATTGGTACGCGGTCTTCGCCCTCGCGCTGGTCATCATCATCGGTTCTGCCGCAGGCCTCGTCGGCACGCTGGC GTTCCTGCTGGCCTTCTTCGTTACCTGGTACTTGCTCTCTGCGCGCGAATTGGGCTTCGCCCAGGCGCGCGCCGCGTTCG GCGTTCGGTTCGATCCGCCGATCTGGACGCGCAGCAACTGGCTGTGGCTCGAGCGGCTATTCGACGATAGCGACAAGCTG TTGAAGGCCGCTGCGGTTGCGATGATCGTGATGGCCAGCACGCTGATGGTCGGCGCGCCGATCACCCTGCTCGTGGCCGT GCTGATCGCCGCCTACCTGGCTTTCAGCATCCACCGCGACGGCCCAACACCGCCGCGCCGCGTGGTCCGGATTCACGATG CCGGCGCAGACATCTCGGCGCACGCAAACCGGAACACTCCGATTCCGCCGCCAACCAACACGACGCAAGGTTCGGCCGTG CAGGCTCCTACCGTGACGCCCGCTCAGCAAGTAGCGGAACCGGCCCCTCTCCTGCTGGGGCCGTTCACCCGCATCGTCGC GCCGCGGCCGCGGCAGGTCACCAAACCGCGGCCCTCCCAGAACCGCCGTCCCGTCTCGCGTGGCGCCCGTAAGGCAGCAA GCAAGCGTCAACAGCGTAAGGCGGCACGCAATCCGGCTCGCCCGCTTCCGCCGCTGCCGAGCCGCAAGCCCGGCTACGCG ATCGCGCTGAAGCCGCGCCGTCCGTTGCGGCAGCCGCCGCAGCTCCGGCAACGGCGCCGCCTTCGGAGGCCGATGACGCT GATGCGGGCAAGCGCCGCGGGTTCGTCACCGACCCGCTGA
Upstream 100 bases:
>100_bases CCAGCCTGCCTCCGCCACACAGGTGTCGCGGCCTGATCCGAATCAACGGCACGCAAACTAAGTCTGTGCGATACTTAGCG AATCGCACGGAGTCATTCCC
Downstream 100 bases:
>100_bases CGGCGGCTTCTGCGCGCTCCCCTAACGGAGCGCTTACTCCACCATCTCGGACACGCCCTTGCCGCAGGCCGAGGTGTCGG CCTGACCACCGAGATCGCGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 279; Mature: 279
Protein sequence:
>279_residues MKDWYAVFALALVIIIGSAAGLVGTLAFLLAFFVTWYLLSARELGFAQARAAFGVRFDPPIWTRSNWLWLERLFDDSDKL LKAAAVAMIVMASTLMVGAPITLLVAVLIAAYLAFSIHRDGPTPPRRVVRIHDAGADISAHANRNTPIPPPTNTTQGSAV QAPTVTPAQQVAEPAPLLLGPFTRIVAPRPRQVTKPRPSQNRRPVSRGARKAASKRQQRKAARNPARPLPPLPSRKPGYA IALKPRRPLRQPPQLRQRRRLRRPMTLMRASAAGSSPTR
Sequences:
>Translated_279_residues MKDWYAVFALALVIIIGSAAGLVGTLAFLLAFFVTWYLLSARELGFAQARAAFGVRFDPPIWTRSNWLWLERLFDDSDKL LKAAAVAMIVMASTLMVGAPITLLVAVLIAAYLAFSIHRDGPTPPRRVVRIHDAGADISAHANRNTPIPPPTNTTQGSAV QAPTVTPAQQVAEPAPLLLGPFTRIVAPRPRQVTKPRPSQNRRPVSRGARKAASKRQQRKAARNPARPLPPLPSRKPGYA IALKPRRPLRQPPQLRQRRRLRRPMTLMRASAAGSSPTR >Mature_279_residues MKDWYAVFALALVIIIGSAAGLVGTLAFLLAFFVTWYLLSARELGFAQARAAFGVRFDPPIWTRSNWLWLERLFDDSDKL LKAAAVAMIVMASTLMVGAPITLLVAVLIAAYLAFSIHRDGPTPPRRVVRIHDAGADISAHANRNTPIPPPTNTTQGSAV QAPTVTPAQQVAEPAPLLLGPFTRIVAPRPRQVTKPRPSQNRRPVSRGARKAASKRQQRKAARNPARPLPPLPSRKPGYA IALKPRRPLRQPPQLRQRRRLRRPMTLMRASAAGSSPTR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30633; Mature: 30633
Theoretical pI: Translated: 12.56; Mature: 12.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKDWYAVFALALVIIIGSAAGLVGTLAFLLAFFVTWYLLSARELGFAQARAAFGVRFDPP CCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC IWTRSNWLWLERLFDDSDKLLKAAAVAMIVMASTLMVGAPITLLVAVLIAAYLAFSIHRD CCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC GPTPPRRVVRIHDAGADISAHANRNTPIPPPTNTTQGSAVQAPTVTPAQQVAEPAPLLLG CCCCHHHEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHHH PFTRIVAPRPRQVTKPRPSQNRRPVSRGARKAASKRQQRKAARNPARPLPPLPSRKPGYA HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEE IALKPRRPLRQPPQLRQRRRLRRPMTLMRASAAGSSPTR EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MKDWYAVFALALVIIIGSAAGLVGTLAFLLAFFVTWYLLSARELGFAQARAAFGVRFDPP CCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC IWTRSNWLWLERLFDDSDKLLKAAAVAMIVMASTLMVGAPITLLVAVLIAAYLAFSIHRD CCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC GPTPPRRVVRIHDAGADISAHANRNTPIPPPTNTTQGSAVQAPTVTPAQQVAEPAPLLLG CCCCHHHEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHHH PFTRIVAPRPRQVTKPRPSQNRRPVSRGARKAASKRQQRKAARNPARPLPPLPSRKPGYA HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEE IALKPRRPLRQPPQLRQRRRLRRPMTLMRASAAGSSPTR EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA