Click here to switch to the map view.

The map label for this gene is osmY [C]

Identifier: 192290264

GI number: 192290264

Start: 2005558

End: 2006208

Strand: Reverse

Name: osmY [C]

Synonym: Rpal_1868

Alternate gene names: 192290264

Gene position: 2006208-2005558 (Counterclockwise)

Preceding gene: 192290273

Following gene: 192290261

Centisome position: 34.93

GC content: 60.83

Gene sequence:

>651_bases
ATGTCCGAGTCCCAGCTTCGTCAAAACATCCTTGACGAGTTCGAATTCGATCCGAGCTTCAACAGCGGCCACATCAAGGT
TGCTGTCGAAACCGACAGAGTGATCCTCAGTGGTCACGTTATGAGCTATGCGGACAAGGTCGCAGCGATCGCTGCGACCC
GCCGCGTCAAAGGCGTGCACGCGATCACCGACCACCTCGAAGTCCGCTCGCCGTTCAATCGAACCGCCGACGATCAGATC
GCACAGCGCGCCTGCGACCTCCTTGAATGGAACGTGCTTGTTCCGTCGAGCTCGGTCGACGTCCAGGTCGAGAACGGGTG
GCTGACGCTGAGCGGCACGGTGGATTGGCACTTCGAACGCGCCGCCGCCGAAGACGATGTCCGCAAGCTCGCCGGCGTGA
TGGGCGTCACCAACAACATCGTCATCAACAATCCACTCGCCGATCATTCCTGCATCCGCGACAAGATCGAGTCGGCGCTG
CGCCGCCACGCCGAGATCGGATCGAAGACCATCCGTGTCACGGTGAAGAACGGCAACATCGTGATCCTGGAAGGCCGGGT
CGACACCTGGGACGAACGTCGCGCGGCGCAAAATGCCGCATGGTCGACTCCGGGCGTAGCAGCGGTCGATGACCGTCTGA
TGATCAACTGA

Upstream 100 bases:

>100_bases
CAATCGCAAAGGTCCGATCTCGTTGATTCTGATCAATGTGTTTGCAGCGCGAGCAACCAAGATGCCGCGCGTCAGCGTAG
CGGTACTCTTGAGGCCACGA

Downstream 100 bases:

>100_bases
TCCAGGATTCCCGCACGTCGGAGATTCTGCCCGTCTGACGCGGGATCACGCGTCCTGCGCGCCGGCTCGCGGCCCGCTGC
GCGGCGGCGCCAGCTGCGGC

Product: transport-associated

Products: NA

Alternate protein names: Osmotically Inducible Protein Y Domain Protein; Osmotically Inducible Protein Y; Lipoprotein; Transport Associated Protein; Periplasmic Or Secreted Lipoprotein; Osmotically Inducible Periplasmic Protein OsmY; Osmotically-Inducible Protein Y

Number of amino acids: Translated: 216; Mature: 215

Protein sequence:

>216_residues
MSESQLRQNILDEFEFDPSFNSGHIKVAVETDRVILSGHVMSYADKVAAIAATRRVKGVHAITDHLEVRSPFNRTADDQI
AQRACDLLEWNVLVPSSSVDVQVENGWLTLSGTVDWHFERAAAEDDVRKLAGVMGVTNNIVINNPLADHSCIRDKIESAL
RRHAEIGSKTIRVTVKNGNIVILEGRVDTWDERRAAQNAAWSTPGVAAVDDRLMIN

Sequences:

>Translated_216_residues
MSESQLRQNILDEFEFDPSFNSGHIKVAVETDRVILSGHVMSYADKVAAIAATRRVKGVHAITDHLEVRSPFNRTADDQI
AQRACDLLEWNVLVPSSSVDVQVENGWLTLSGTVDWHFERAAAEDDVRKLAGVMGVTNNIVINNPLADHSCIRDKIESAL
RRHAEIGSKTIRVTVKNGNIVILEGRVDTWDERRAAQNAAWSTPGVAAVDDRLMIN
>Mature_215_residues
SESQLRQNILDEFEFDPSFNSGHIKVAVETDRVILSGHVMSYADKVAAIAATRRVKGVHAITDHLEVRSPFNRTADDQIA
QRACDLLEWNVLVPSSSVDVQVENGWLTLSGTVDWHFERAAAEDDVRKLAGVMGVTNNIVINNPLADHSCIRDKIESALR
RHAEIGSKTIRVTVKNGNIVILEGRVDTWDERRAAQNAAWSTPGVAAVDDRLMIN

Specific function: Unknown

COG id: COG2823

COG function: function code R; Predicted periplasmic or secreted lipoprotein

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 2960 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 780 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). 160 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). 80 Molecules/Cell In: Stati

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23921; Mature: 23790

Theoretical pI: Translated: 5.59; Mature: 5.59

Prosite motif: PS50914 BON

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSESQLRQNILDEFEFDPSFNSGHIKVAVETDRVILSGHVMSYADKVAAIAATRRVKGVH
CCHHHHHHHHHHHHCCCCCCCCCEEEEEEECCEEEEECHHHHHHHHHHHHHHHHHHCCHH
AITDHLEVRSPFNRTADDQIAQRACDLLEWNVLVPSSSVDVQVENGWLTLSGTVDWHFER
HHHHHHHHCCCCCCCHHHHHHHHHHHHHCCEEECCCCCEEEEECCCEEEEECCEEEEEHH
AAAEDDVRKLAGVMGVTNNIVINNPLADHSCIRDKIESALRRHAEIGSKTIRVTVKNGNI
HCCHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCE
VILEGRVDTWDERRAAQNAAWSTPGVAAVDDRLMIN
EEEECCCCCHHHHHHHHCCCCCCCCCEEECCEEECC
>Mature Secondary Structure 
SESQLRQNILDEFEFDPSFNSGHIKVAVETDRVILSGHVMSYADKVAAIAATRRVKGVH
CHHHHHHHHHHHHCCCCCCCCCEEEEEEECCEEEEECHHHHHHHHHHHHHHHHHHCCHH
AITDHLEVRSPFNRTADDQIAQRACDLLEWNVLVPSSSVDVQVENGWLTLSGTVDWHFER
HHHHHHHHCCCCCCCHHHHHHHHHHHHHCCEEECCCCCEEEEECCCEEEEECCEEEEEHH
AAAEDDVRKLAGVMGVTNNIVINNPLADHSCIRDKIESALRRHAEIGSKTIRVTVKNGNI
HCCHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCE
VILEGRVDTWDERRAAQNAAWSTPGVAAVDDRLMIN
EEEECCCCCHHHHHHHHCCCCCCCCCEEECCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA