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The map label for this gene is yedQ [C]

Identifier: 192290248

GI number: 192290248

Start: 1989409

End: 1990623

Strand: Reverse

Name: yedQ [C]

Synonym: Rpal_1852

Alternate gene names: 192290248

Gene position: 1990623-1989409 (Counterclockwise)

Preceding gene: 192290251

Following gene: 192290246

Centisome position: 34.66

GC content: 65.02

Gene sequence:

>1215_bases
ATGTTGAGCATGCCGACGCTCTGGATCGTCTTCCTGATCAATTTCGTTTCGCTGGGCCTGGTGTGGGTCCACGTCACCCG
CAACTATCCAAACTTCACGCCAGCCCGCTACATGACGGCGGCTTGCTTCGTGCTCGCGACCGGCTCCGTCGTCGGCATGC
TTCGCATAGTGATCAATGTCGAACTCTCGCTGATCGGCGGCGGAACGTTAGTGGTCTTCGCCTGCTGTTTGTCAGCCATG
GGCATGTACGAGTTCTACGGCCGCCGCGTGCCGTGGATGACCTCGTTCATCGTCACCGGCACGGCCGCACTCGGGCTCAC
CTTCTTCATCTTCGTCGTCGACTCGATGGCGATGCGGATCTTGGTGTATTCGCTGGCGCAGTTGGTCCCGATCGCCCTGA
CGCTGCCGCTGGTGACGTCCAAGGTCGGGCGTCGCAACCCCGGCGCGCGAATGGCAGCCGTGATCGCCTGTCTGATCATG
GCTGTCTATCTGGTGCGCTCCGTCGCTGCGATCATGGGCGTCGGCGGCGAACTCTCACTGGTTCACTTCAATGACTTCCA
GTCGGCGTTGGTGCTGGCGCTGGTGTTCCTGTCGATGACCTGGAATTTCGCCTTCCTGCTGATGGCGATCGACCGGCTGC
GCTCGGAAGTTGAAAATCTCGCGCTGCTCGACGACCTCACCGGCATCTCCAACCGCCGGCATCTGCTGCAGCGGATGTCG
GAGCAGTGCACGCTCTCGATGAGCACCGGCGAGCCGTTCGCCGTGCTGGCGATCGACCTCGACGGCTTCAAGGCGATCAA
CGACGGTCACGGCCATGCAGCAGGCGACGAGTGCCTGCGTCGGTTCTCGCGGGCCGCGCAGTCGCGGCTGCGCCCCGGCG
ATCTGCTGGCCCGGGCCGGCGGCGACGAATTCTGCGTGGTGATGCCGGGGACGACGCTGCGCGAAGGCGCGATGATCGCC
CGCTACATCCTGGACGAGAGCCGCGCCGTGTCGGAGCGCGGCGAGGCTGGGATCAAGATCGCAGCCTCGATCGGCATCGC
GCAGTGGACCCCGCAGATCGGCCAGCACCCCGAGCGGCTAATCGCGGCGGCCGATGTCGCGCTGTACAACGCCAAGAAGC
TCGGCAAGGACCGCTACGCGGTGTACGAGCCCGCCCCCGAGCCGCCGCCCGAGACCCATCTCCCCACACCTGAGACGCTG
CGCAAGATCGCCTGA

Upstream 100 bases:

>100_bases
AACGCTCGCGGCGCACCCTCTGCTCAACTTTGGGAGTAGTCATGGGCGGGCGACAGATAACAATCGGAGGTTGGGCGGCC
TCCATCGAGCGGAGGCGCGC

Downstream 100 bases:

>100_bases
CGTTGCGCCGCCTTGGCGCTTCGCGTCGTTCTAAGCTAGCAGCGTCGCGTGGATGGTGCTCAGCCCGATCGCGATCGTGA
GGATACCGACCGCGCCCTGC

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 404; Mature: 404

Protein sequence:

>404_residues
MLSMPTLWIVFLINFVSLGLVWVHVTRNYPNFTPARYMTAACFVLATGSVVGMLRIVINVELSLIGGGTLVVFACCLSAM
GMYEFYGRRVPWMTSFIVTGTAALGLTFFIFVVDSMAMRILVYSLAQLVPIALTLPLVTSKVGRRNPGARMAAVIACLIM
AVYLVRSVAAIMGVGGELSLVHFNDFQSALVLALVFLSMTWNFAFLLMAIDRLRSEVENLALLDDLTGISNRRHLLQRMS
EQCTLSMSTGEPFAVLAIDLDGFKAINDGHGHAAGDECLRRFSRAAQSRLRPGDLLARAGGDEFCVVMPGTTLREGAMIA
RYILDESRAVSERGEAGIKIAASIGIAQWTPQIGQHPERLIAAADVALYNAKKLGKDRYAVYEPAPEPPPETHLPTPETL
RKIA

Sequences:

>Translated_404_residues
MLSMPTLWIVFLINFVSLGLVWVHVTRNYPNFTPARYMTAACFVLATGSVVGMLRIVINVELSLIGGGTLVVFACCLSAM
GMYEFYGRRVPWMTSFIVTGTAALGLTFFIFVVDSMAMRILVYSLAQLVPIALTLPLVTSKVGRRNPGARMAAVIACLIM
AVYLVRSVAAIMGVGGELSLVHFNDFQSALVLALVFLSMTWNFAFLLMAIDRLRSEVENLALLDDLTGISNRRHLLQRMS
EQCTLSMSTGEPFAVLAIDLDGFKAINDGHGHAAGDECLRRFSRAAQSRLRPGDLLARAGGDEFCVVMPGTTLREGAMIA
RYILDESRAVSERGEAGIKIAASIGIAQWTPQIGQHPERLIAAADVALYNAKKLGKDRYAVYEPAPEPPPETHLPTPETL
RKIA
>Mature_404_residues
MLSMPTLWIVFLINFVSLGLVWVHVTRNYPNFTPARYMTAACFVLATGSVVGMLRIVINVELSLIGGGTLVVFACCLSAM
GMYEFYGRRVPWMTSFIVTGTAALGLTFFIFVVDSMAMRILVYSLAQLVPIALTLPLVTSKVGRRNPGARMAAVIACLIM
AVYLVRSVAAIMGVGGELSLVHFNDFQSALVLALVFLSMTWNFAFLLMAIDRLRSEVENLALLDDLTGISNRRHLLQRMS
EQCTLSMSTGEPFAVLAIDLDGFKAINDGHGHAAGDECLRRFSRAAQSRLRPGDLLARAGGDEFCVVMPGTTLREGAMIA
RYILDESRAVSERGEAGIKIAASIGIAQWTPQIGQHPERLIAAADVALYNAKKLGKDRYAVYEPAPEPPPETHLPTPETL
RKIA

Specific function: Unknown

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI87082007, Length=170, Percent_Identity=37.6470588235294, Blast_Score=105, Evalue=7e-24,
Organism=Escherichia coli, GI145693134, Length=169, Percent_Identity=38.4615384615385, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1786584, Length=169, Percent_Identity=34.3195266272189, Blast_Score=98, Evalue=9e-22,
Organism=Escherichia coli, GI1787262, Length=167, Percent_Identity=34.1317365269461, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1788381, Length=162, Percent_Identity=36.4197530864198, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI87081881, Length=167, Percent_Identity=34.1317365269461, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787541, Length=194, Percent_Identity=33.5051546391753, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1787802, Length=180, Percent_Identity=29.4444444444444, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI87081977, Length=163, Percent_Identity=30.0613496932515, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87081974, Length=126, Percent_Identity=29.3650793650794, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1787816, Length=203, Percent_Identity=28.0788177339901, Blast_Score=68, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 44045; Mature: 44045

Theoretical pI: Translated: 8.28; Mature: 8.28

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSMPTLWIVFLINFVSLGLVWVHVTRNYPNFTPARYMTAACFVLATGSVVGMLRIVINV
CCCCHHHHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEE
ELSLIGGGTLVVFACCLSAMGMYEFYGRRVPWMTSFIVTGTAALGLTFFIFVVDSMAMRI
EEEEECCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVYSLAQLVPIALTLPLVTSKVGRRNPGARMAAVIACLIMAVYLVRSVAAIMGVGGELSL
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
VHFNDFQSALVLALVFLSMTWNFAFLLMAIDRLRSEVENLALLDDLTGISNRRHLLQRMS
EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
EQCTLSMSTGEPFAVLAIDLDGFKAINDGHGHAAGDECLRRFSRAAQSRLRPGDLLARAG
HHCEEEECCCCCEEEEEEECCCCEECCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHCC
GDEFCVVMPGTTLREGAMIARYILDESRAVSERGEAGIKIAASIGIAQWTPQIGQHPERL
CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHCCCHHCCCHHHH
IAAADVALYNAKKLGKDRYAVYEPAPEPPPETHLPTPETLRKIA
HHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHCC
>Mature Secondary Structure
MLSMPTLWIVFLINFVSLGLVWVHVTRNYPNFTPARYMTAACFVLATGSVVGMLRIVINV
CCCCHHHHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEE
ELSLIGGGTLVVFACCLSAMGMYEFYGRRVPWMTSFIVTGTAALGLTFFIFVVDSMAMRI
EEEEECCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVYSLAQLVPIALTLPLVTSKVGRRNPGARMAAVIACLIMAVYLVRSVAAIMGVGGELSL
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
VHFNDFQSALVLALVFLSMTWNFAFLLMAIDRLRSEVENLALLDDLTGISNRRHLLQRMS
EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
EQCTLSMSTGEPFAVLAIDLDGFKAINDGHGHAAGDECLRRFSRAAQSRLRPGDLLARAG
HHCEEEECCCCCEEEEEEECCCCEECCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHCC
GDEFCVVMPGTTLREGAMIARYILDESRAVSERGEAGIKIAASIGIAQWTPQIGQHPERL
CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHCCCHHCCCHHHH
IAAADVALYNAKKLGKDRYAVYEPAPEPPPETHLPTPETLRKIA
HHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]