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The map label for this gene is ycjC [C]

Identifier: 192290177

GI number: 192290177

Start: 1913364

End: 1913759

Strand: Reverse

Name: ycjC [C]

Synonym: Rpal_1779

Alternate gene names: 192290177

Gene position: 1913759-1913364 (Counterclockwise)

Preceding gene: 192290178

Following gene: 192290176

Centisome position: 33.32

GC content: 64.65

Gene sequence:

>396_bases
ATGACAATCAAAACCTTGCGTCACATCCTGGTCGCATGCGCCGTGGTAGCTGCTGCCGGCGCCGCCGTCGCGCAGCAGAG
CGGCATCAAGCGCACGCCGCTGCAGAAGATCGAATTCCCCGACGGCTATGTCACCGTCAGCGGTCTCGCCGAGCTGCCGC
CGGGCGGCAATATCGGCCGCCACACCCATCCCGGCATCGAGACCGGCTATCTGCTCGAGGGCGAAGCGGTGATGAGCATC
GACGGTGAACCCGACAAGCACCTCAAGGCCGGCGACTCCTATGTCATCCCGGCCGGTGTGGTGCACGATGCTAAAGTGCA
CGGCGACAAGGGCGCCAAGGTGATGGCGGTGTGGGTGGTCGACAAGACCAAGCCGCTGGCGACACCCGCCAAGTAA

Upstream 100 bases:

>100_bases
GGCGAGCGCGGCGCTGGCGCCCTATTTCGGCGGCCGGATTCCGGCCTGAGCGCTTTTCCGCCTGCCGGGACGCTGCTAGC
CTCGGCGCCGGAGGAGCCCA

Downstream 100 bases:

>100_bases
TGCGGGGCAGAACACGCCGGATCTCGGCCCCACGCAGGTTGATTGCGGATCTGATGCACGCCTCGCAGGCCGTGCCGCTG
ATCAGCTATCGGCGCACGTT

Product: cupin

Products: NA

Alternate protein names: Cupin 2 Barrel; Cupin 2 Conserved Barrel Domain-Containing Protein; Cupin 2 Conserved Barrel; Cupin Region; Cupin 2 Conserved Barrel Domain Protein

Number of amino acids: Translated: 131; Mature: 130

Protein sequence:

>131_residues
MTIKTLRHILVACAVVAAAGAAVAQQSGIKRTPLQKIEFPDGYVTVSGLAELPPGGNIGRHTHPGIETGYLLEGEAVMSI
DGEPDKHLKAGDSYVIPAGVVHDAKVHGDKGAKVMAVWVVDKTKPLATPAK

Sequences:

>Translated_131_residues
MTIKTLRHILVACAVVAAAGAAVAQQSGIKRTPLQKIEFPDGYVTVSGLAELPPGGNIGRHTHPGIETGYLLEGEAVMSI
DGEPDKHLKAGDSYVIPAGVVHDAKVHGDKGAKVMAVWVVDKTKPLATPAK
>Mature_130_residues
TIKTLRHILVACAVVAAAGAAVAQQSGIKRTPLQKIEFPDGYVTVSGLAELPPGGNIGRHTHPGIETGYLLEGEAVMSID
GEPDKHLKAGDSYVIPAGVVHDAKVHGDKGAKVMAVWVVDKTKPLATPAK

Specific function: Unknown

COG id: COG1917

COG function: function code S; Uncharacterized conserved protein, contains double-stranded beta-helix domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13624; Mature: 13493

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIKTLRHILVACAVVAAAGAAVAQQSGIKRTPLQKIEFPDGYVTVSGLAELPPGGNIGR
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCEEEECCCEECCCCCCCCC
HTHPGIETGYLLEGEAVMSIDGEPDKHLKAGDSYVIPAGVVHDAKVHGDKGAKVMAVWVV
CCCCCCCCCEEECCCEEEEECCCCCCCEECCCCEECCCCCEECCEEECCCCCEEEEEEEE
DKTKPLATPAK
ECCCCCCCCCC
>Mature Secondary Structure 
TIKTLRHILVACAVVAAAGAAVAQQSGIKRTPLQKIEFPDGYVTVSGLAELPPGGNIGR
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCEEEECCCEECCCCCCCCC
HTHPGIETGYLLEGEAVMSIDGEPDKHLKAGDSYVIPAGVVHDAKVHGDKGAKVMAVWVV
CCCCCCCCCEEECCCEEEEECCCCCCCEECCCCEECCCCCEECCEEECCCCCEEEEEEEE
DKTKPLATPAK
ECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA