| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
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The map label for this gene is 192290088
Identifier: 192290088
GI number: 192290088
Start: 1811534
End: 1813138
Strand: Reverse
Name: 192290088
Synonym: Rpal_1690
Alternate gene names: NA
Gene position: 1813138-1811534 (Counterclockwise)
Preceding gene: 192290089
Following gene: 192290087
Centisome position: 31.57
GC content: 66.23
Gene sequence:
>1605_bases ATGGCCATGCGCCGCGGGCTGAAGCCGCTTCGGATCATCGTCGCCCTTGTCGCTATGATCGCGATCGCGGTGGCCCTCTG GCAGCTGCAGGCCGGCAAAGACGGCTTGATCATTACCCACACCGAGGTCGGAGCCACGCCCGTCACGGTGTTCCGGCAGC CGTCCGTCACCAGCGCTCCGGTGATGGTGATCGCGCACGGCTTCGCCGGCTCGCAGCAATTGATGCAGCCGTTCGCGCAG ACGCTGGCGCGCAACGGCTACATCGCGGTGACCTTCGATTTCACCGGCCACGGCCGCAATCCGCTGACGATGCAGGGCGA CGTCGACGAGCCGACCAAGATCACCGGCGTACTGGTCGACGAACTCGGCCGGGTCACCGACTACGCCCGCAAATTGCCGG AGAGCGACGGCCGCGCCGCGGTGCTGGGCCATTCAATGGCCTCGGACATCGTGGTGGCCTACGCGGTGGAACATCCCGAG ATCATCGCCACCGTCGCGGTCTCGGTGTTCACGCGGAAATCGACCGCGACGCTGCCGCACAATCTGCTGGTGATCGTCGG CGCGCTCGAGCCGCAGATGCTGAAGGACGAGGGCCTGCGCATCGTCAATCAGGTCGCCGGCGGCAATGCCGTCGAGGGAC GCACCTATGGCAGCTTCGCAAACGGCACCGCGCGCCGTTTCGTGCTCTCATCCGGCGTCGAGCACATCGGCGTGCTGTAC AGCCAGGACTCGATGCGCGAGTCGCTGCATTGGATAAACGATGCGTTCGGCCGCACCAGCTCCGGCTGGATCGACCAGCG GCCGCGCTGGCTGGCGCTCTTGTTCGGCGGCCTGATCGCGCTGGCCTGGCCGCTGTCGAAGCTGCTGCCGCGCGCGGCCG CCACGCCGATGGGCGCCAGCCTGCCATGGAAGCAGCTTCTGGTGACAGCGATCGTGCCGGCGGTGCTGACGCCGCTGCTG CTATGGAAGGCGCCGACCGACTTCCTGATCATCCTGCTTGGCGACTATCTGACGCTGCACTTCCTGCTGTACGGCCTGCT TACGGCCACGATCCTGGTGCTGATCCGGCTGCGCAGCCGCCGTTCAGCGCCGCATCCCGCACGGCCGCACGCGCAGGAAC TGGCCGCGCTCGGCGCCCTGCCCGATCCCGCCCACCCGCGCGTCGCGATCGGGGCACTGGCGATCGGCGCCGTGGCTGCG ATCGCCTACAACATTCTCGGCTTCGGCATCGCACTCGACAGCTATCTGTTCTCGTTCATGCCTATCGAACAGCGCATCCA CCTGATCGTAGCGGTCGCCTGCGGCACGATCCCGTATTTCGTCACTGCGGAATGGATGGCACACGGCCAGAACTCCAAGC GCGGCGCCTACGCGCTGGCGAAGTTCTGCTTTCTGGCTTCGCTGGCGGCGGCGGTCGCGCTCAATCTACAGAAGCTGTTC TTCCTGATCATCATCGTGCCGGCGATCCTGCTGCTGTTCCTGGCCTTCGGCCTGATCAGTAACTGGACCTACAAGGCGAC CAATCACCCGCTGCCCGGTGCGCTGGCCAACGCGGTGCTGTTCGCCTGGGCAATTGCGGTGACGTTCCCGATGGTGATCC GCTGA
Upstream 100 bases:
>100_bases ATCCGAATCTCCTGACCGCTGGGTTTGTTCCGATTGCCGCACTGGTGATCTGGTGGACGATCCGCCGAATCCGCAAGAAA CACATCCCGGACGTCGATTG
Downstream 100 bases:
>100_bases TGCAGCACGAGCTGTGGCCGGCGAAAGGACAGCGGCGCTGGAGGGTGATCACCGACACCGTGATGGGCGGCGTGTCGCAG GGTACCGTGCAGCTTGTCGA
Product: dienelactone hydrolase
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 534; Mature: 533
Protein sequence:
>534_residues MAMRRGLKPLRIIVALVAMIAIAVALWQLQAGKDGLIITHTEVGATPVTVFRQPSVTSAPVMVIAHGFAGSQQLMQPFAQ TLARNGYIAVTFDFTGHGRNPLTMQGDVDEPTKITGVLVDELGRVTDYARKLPESDGRAAVLGHSMASDIVVAYAVEHPE IIATVAVSVFTRKSTATLPHNLLVIVGALEPQMLKDEGLRIVNQVAGGNAVEGRTYGSFANGTARRFVLSSGVEHIGVLY SQDSMRESLHWINDAFGRTSSGWIDQRPRWLALLFGGLIALAWPLSKLLPRAAATPMGASLPWKQLLVTAIVPAVLTPLL LWKAPTDFLIILLGDYLTLHFLLYGLLTATILVLIRLRSRRSAPHPARPHAQELAALGALPDPAHPRVAIGALAIGAVAA IAYNILGFGIALDSYLFSFMPIEQRIHLIVAVACGTIPYFVTAEWMAHGQNSKRGAYALAKFCFLASLAAAVALNLQKLF FLIIIVPAILLLFLAFGLISNWTYKATNHPLPGALANAVLFAWAIAVTFPMVIR
Sequences:
>Translated_534_residues MAMRRGLKPLRIIVALVAMIAIAVALWQLQAGKDGLIITHTEVGATPVTVFRQPSVTSAPVMVIAHGFAGSQQLMQPFAQ TLARNGYIAVTFDFTGHGRNPLTMQGDVDEPTKITGVLVDELGRVTDYARKLPESDGRAAVLGHSMASDIVVAYAVEHPE IIATVAVSVFTRKSTATLPHNLLVIVGALEPQMLKDEGLRIVNQVAGGNAVEGRTYGSFANGTARRFVLSSGVEHIGVLY SQDSMRESLHWINDAFGRTSSGWIDQRPRWLALLFGGLIALAWPLSKLLPRAAATPMGASLPWKQLLVTAIVPAVLTPLL LWKAPTDFLIILLGDYLTLHFLLYGLLTATILVLIRLRSRRSAPHPARPHAQELAALGALPDPAHPRVAIGALAIGAVAA IAYNILGFGIALDSYLFSFMPIEQRIHLIVAVACGTIPYFVTAEWMAHGQNSKRGAYALAKFCFLASLAAAVALNLQKLF FLIIIVPAILLLFLAFGLISNWTYKATNHPLPGALANAVLFAWAIAVTFPMVIR >Mature_533_residues AMRRGLKPLRIIVALVAMIAIAVALWQLQAGKDGLIITHTEVGATPVTVFRQPSVTSAPVMVIAHGFAGSQQLMQPFAQT LARNGYIAVTFDFTGHGRNPLTMQGDVDEPTKITGVLVDELGRVTDYARKLPESDGRAAVLGHSMASDIVVAYAVEHPEI IATVAVSVFTRKSTATLPHNLLVIVGALEPQMLKDEGLRIVNQVAGGNAVEGRTYGSFANGTARRFVLSSGVEHIGVLYS QDSMRESLHWINDAFGRTSSGWIDQRPRWLALLFGGLIALAWPLSKLLPRAAATPMGASLPWKQLLVTAIVPAVLTPLLL WKAPTDFLIILLGDYLTLHFLLYGLLTATILVLIRLRSRRSAPHPARPHAQELAALGALPDPAHPRVAIGALAIGAVAAI AYNILGFGIALDSYLFSFMPIEQRIHLIVAVACGTIPYFVTAEWMAHGQNSKRGAYALAKFCFLASLAAAVALNLQKLFF LIIIVPAILLLFLAFGLISNWTYKATNHPLPGALANAVLFAWAIAVTFPMVIR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 57520; Mature: 57388
Theoretical pI: Translated: 10.08; Mature: 10.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAMRRGLKPLRIIVALVAMIAIAVALWQLQAGKDGLIITHTEVGATPVTVFRQPSVTSAP CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEECCCCCCCC VMVIAHGFAGSQQLMQPFAQTLARNGYIAVTFDFTGHGRNPLTMQGDVDEPTKITGVLVD EEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCEECCCCCCCHHHHHHHHH ELGRVTDYARKLPESDGRAAVLGHSMASDIVVAYAVEHPEIIATVAVSVFTRKSTATLPH HHHHHHHHHHHCCCCCCCEEEECHHHHHHEEEEEECCCCHHHHHHHHHHHHCCCCCCCCC NLLVIVGALEPQMLKDEGLRIVNQVAGGNAVEGRTYGSFANGTARRFVLSSGVEHIGVLY CEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHEEE SQDSMRESLHWINDAFGRTSSGWIDQRPRWLALLFGGLIALAWPLSKLLPRAAATPMGAS CCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC LPWKQLLVTAIVPAVLTPLLLWKAPTDFLIILLGDYLTLHFLLYGLLTATILVLIRLRSR CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RSAPHPARPHAQELAALGALPDPAHPRVAIGALAIGAVAAIAYNILGFGIALDSYLFSFM CCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC PIEQRIHLIVAVACGTIPYFVTAEWMAHGQNSKRGAYALAKFCFLASLAAAVALNLQKLF CHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH FLIIIVPAILLLFLAFGLISNWTYKATNHPLPGALANAVLFAWAIAVTFPMVIR HHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure AMRRGLKPLRIIVALVAMIAIAVALWQLQAGKDGLIITHTEVGATPVTVFRQPSVTSAP CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEECCCCCCCC VMVIAHGFAGSQQLMQPFAQTLARNGYIAVTFDFTGHGRNPLTMQGDVDEPTKITGVLVD EEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCEECCCCCCCHHHHHHHHH ELGRVTDYARKLPESDGRAAVLGHSMASDIVVAYAVEHPEIIATVAVSVFTRKSTATLPH HHHHHHHHHHHCCCCCCCEEEECHHHHHHEEEEEECCCCHHHHHHHHHHHHCCCCCCCCC NLLVIVGALEPQMLKDEGLRIVNQVAGGNAVEGRTYGSFANGTARRFVLSSGVEHIGVLY CEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHEEE SQDSMRESLHWINDAFGRTSSGWIDQRPRWLALLFGGLIALAWPLSKLLPRAAATPMGAS CCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC LPWKQLLVTAIVPAVLTPLLLWKAPTDFLIILLGDYLTLHFLLYGLLTATILVLIRLRSR CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RSAPHPARPHAQELAALGALPDPAHPRVAIGALAIGAVAAIAYNILGFGIALDSYLFSFM CCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC PIEQRIHLIVAVACGTIPYFVTAEWMAHGQNSKRGAYALAKFCFLASLAAAVALNLQKLF CHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH FLIIIVPAILLLFLAFGLISNWTYKATNHPLPGALANAVLFAWAIAVTFPMVIR HHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA