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The map label for this gene is yfdE [H]

Identifier: 192290073

GI number: 192290073

Start: 1794302

End: 1795504

Strand: Reverse

Name: yfdE [H]

Synonym: Rpal_1675

Alternate gene names: 192290073

Gene position: 1795504-1794302 (Counterclockwise)

Preceding gene: 192290074

Following gene: 192290068

Centisome position: 31.26

GC content: 66.42

Gene sequence:

>1203_bases
ATGACCGTCGAAACGCGGACACAGAAACCGCTGGCCACCACCGCTAACGCCAGGGCCCTCGACGGGCTCCGCGTGCTCGA
TTTCTCCACCACCATCGCTGGCCCGCACTGCACCCGGATGCTGTCCGACATGGGCGCCGAGGTGATCAAGATCGAAGCCG
CCGACGGCGACACCATGCGCAACCGGCCGCCGGTACGTGAGGCCTGCAGCACCGCGTTCGGCCAGCTCAACGTCGGCAAA
AAGAGCATCGTGCTCGACCTGAAATCGCCCGACGGCCTCGAGGCAGTGCAGCGGCTGGTCGCCGGCGCCGATATCCTGGT
CGAGAACTTCCGCCCCGGCGTGATGCAGCGGCTGCAGATGGACTACGCGTCGCTGCGCGGCTTCAATCCCGAACTGATCT
ACTGCTCGATCTCCGGCTACGGCCAGACCGGGCCGTCGGCGGAACTGCCCGCCTATGCGCCTGCGATCCATGCCGCGTCC
GGTTTCGACCTCGCGCACCTCGCCTATCAGCCAGGCCGCGACCGCCCGGACTACTGCGGCATCTATCTCGCCGACGTCGT
CAGCGGGATCTACGCCTATGGGGCGATTACCTCGGCGTTGTATCAGCGCGTGCGCACAGGCGAGGGCCAGCACATCGACG
TGTCGATGCTGGAAGCGATGCTGACGCTGACGTTGAACGAGATGCAGTGGTCGCAGTTTCCGGTGACGCTGCCGGGGCGG
CCGCAGTTCGGCCCTGTCGAAACCTCCGACGGGTACGTGATGATCGCCGTCGCCAGCGAGAAATCGTTCCGCAGCTTCAT
GCTGGCGGCCGAGCGCCCCGACCTGATCACCGATCCACGGTTCGAGAAGTACGCCGACCGCCGCCTCGCCTGGGGCGAAC
TGATGGACACCATCGAGACGAGCTGGTCGCGCAAGCTGACGTCGAAGCAGTGCCTTGCCGCGCTCGACAAATTCGGCGTG
CCCTGCTCTGCCTATCGCACCGTGGCCGAGGCAATGGCCGATCCGCAGACCGCGCACCGCCAAGCGCTCGCAGAAGTGCA
CGACGATGCCGGCAGCTTCAAGGTGCTCAATCTGCCGTTCCGGATGTCGGCGGCAAATCCGTCGCCGAACCCGCGCGTGG
CGCGGCTCGGCGAGCACACCAAGGCGGTGCTGCAACAGGCCGGCTATTCGGACGAGGACATCGCCCAGTTCGGCGCACGC
TGA

Upstream 100 bases:

>100_bases
ATCGACCCGCTAGCCTGCACCTTCATTGGGCAAGCAACTTCCCGCGGGCACTGGTGCTTTACGCGCCGCGTCAAGAACGG
GAGGGATCAGGGGAGACCGA

Downstream 100 bases:

>100_bases
GCGCTACGCGGCGCGGCGCAGCCGTACACGCCACACCGCGGGTCCCTGCTCCAGATAGGTCCACTGGCAATCATCGCCAT
GGACCGATGCGAAGAACTGG

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 400; Mature: 399

Protein sequence:

>400_residues
MTVETRTQKPLATTANARALDGLRVLDFSTTIAGPHCTRMLSDMGAEVIKIEAADGDTMRNRPPVREACSTAFGQLNVGK
KSIVLDLKSPDGLEAVQRLVAGADILVENFRPGVMQRLQMDYASLRGFNPELIYCSISGYGQTGPSAELPAYAPAIHAAS
GFDLAHLAYQPGRDRPDYCGIYLADVVSGIYAYGAITSALYQRVRTGEGQHIDVSMLEAMLTLTLNEMQWSQFPVTLPGR
PQFGPVETSDGYVMIAVASEKSFRSFMLAAERPDLITDPRFEKYADRRLAWGELMDTIETSWSRKLTSKQCLAALDKFGV
PCSAYRTVAEAMADPQTAHRQALAEVHDDAGSFKVLNLPFRMSAANPSPNPRVARLGEHTKAVLQQAGYSDEDIAQFGAR

Sequences:

>Translated_400_residues
MTVETRTQKPLATTANARALDGLRVLDFSTTIAGPHCTRMLSDMGAEVIKIEAADGDTMRNRPPVREACSTAFGQLNVGK
KSIVLDLKSPDGLEAVQRLVAGADILVENFRPGVMQRLQMDYASLRGFNPELIYCSISGYGQTGPSAELPAYAPAIHAAS
GFDLAHLAYQPGRDRPDYCGIYLADVVSGIYAYGAITSALYQRVRTGEGQHIDVSMLEAMLTLTLNEMQWSQFPVTLPGR
PQFGPVETSDGYVMIAVASEKSFRSFMLAAERPDLITDPRFEKYADRRLAWGELMDTIETSWSRKLTSKQCLAALDKFGV
PCSAYRTVAEAMADPQTAHRQALAEVHDDAGSFKVLNLPFRMSAANPSPNPRVARLGEHTKAVLQQAGYSDEDIAQFGAR
>Mature_399_residues
TVETRTQKPLATTANARALDGLRVLDFSTTIAGPHCTRMLSDMGAEVIKIEAADGDTMRNRPPVREACSTAFGQLNVGKK
SIVLDLKSPDGLEAVQRLVAGADILVENFRPGVMQRLQMDYASLRGFNPELIYCSISGYGQTGPSAELPAYAPAIHAASG
FDLAHLAYQPGRDRPDYCGIYLADVVSGIYAYGAITSALYQRVRTGEGQHIDVSMLEAMLTLTLNEMQWSQFPVTLPGRP
QFGPVETSDGYVMIAVASEKSFRSFMLAAERPDLITDPRFEKYADRRLAWGELMDTIETSWSRKLTSKQCLAALDKFGVP
CSAYRTVAEAMADPQTAHRQALAEVHDDAGSFKVLNLPFRMSAANPSPNPRVARLGEHTKAVLQQAGYSDEDIAQFGAR

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=408, Percent_Identity=30.1470588235294, Blast_Score=194, Evalue=1e-49,
Organism=Homo sapiens, GI300863124, Length=429, Percent_Identity=29.3706293706294, Blast_Score=184, Evalue=1e-46,
Organism=Homo sapiens, GI300863126, Length=400, Percent_Identity=28, Blast_Score=149, Evalue=4e-36,
Organism=Homo sapiens, GI13376042, Length=429, Percent_Identity=27.039627039627, Blast_Score=144, Evalue=1e-34,
Organism=Homo sapiens, GI42794625, Length=402, Percent_Identity=28.6069651741293, Blast_Score=126, Evalue=3e-29,
Organism=Homo sapiens, GI266456254, Length=402, Percent_Identity=28.6069651741293, Blast_Score=126, Evalue=4e-29,
Organism=Homo sapiens, GI266458393, Length=267, Percent_Identity=32.5842696629214, Blast_Score=117, Evalue=3e-26,
Organism=Homo sapiens, GI266458397, Length=267, Percent_Identity=32.5842696629214, Blast_Score=117, Evalue=3e-26,
Organism=Homo sapiens, GI42822893, Length=156, Percent_Identity=37.1794871794872, Blast_Score=97, Evalue=3e-20,
Organism=Homo sapiens, GI266458395, Length=156, Percent_Identity=37.1794871794872, Blast_Score=97, Evalue=4e-20,
Organism=Escherichia coli, GI87082093, Length=377, Percent_Identity=33.6870026525199, Blast_Score=187, Evalue=8e-49,
Organism=Escherichia coli, GI1788717, Length=409, Percent_Identity=29.3398533007335, Blast_Score=157, Evalue=1e-39,
Organism=Escherichia coli, GI1786222, Length=402, Percent_Identity=27.1144278606965, Blast_Score=97, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI32564160, Length=209, Percent_Identity=32.0574162679426, Blast_Score=95, Evalue=6e-20,
Organism=Caenorhabditis elegans, GI115535051, Length=309, Percent_Identity=25.8899676375405, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24648431, Length=396, Percent_Identity=33.0808080808081, Blast_Score=178, Evalue=6e-45,
Organism=Drosophila melanogaster, GI24585488, Length=323, Percent_Identity=31.5789473684211, Blast_Score=116, Evalue=3e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 43664; Mature: 43533

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVETRTQKPLATTANARALDGLRVLDFSTTIAGPHCTRMLSDMGAEVIKIEAADGDTMR
CCCCCCCCCCCCCCCCCHHHCCEEEEEECCCCCCHHHHHHHHHCCCEEEEEECCCCCCCC
NRPPVREACSTAFGQLNVGKKSIVLDLKSPDGLEAVQRLVAGADILVENFRPGVMQRLQM
CCCCHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHCHHHHHHCCCHHHHHHHHH
DYASLRGFNPELIYCSISGYGQTGPSAELPAYAPAIHAASGFDLAHLAYQPGRDRPDYCG
HHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHCCCCCCHHHHHCCCCCCCCCHHH
IYLADVVSGIYAYGAITSALYQRVRTGEGQHIDVSMLEAMLTLTLNEMQWSQFPVTLPGR
EEHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHCCCCCCCEECCCC
PQFGPVETSDGYVMIAVASEKSFRSFMLAAERPDLITDPRFEKYADRRLAWGELMDTIET
CCCCCCCCCCCEEEEEEECCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
SWSRKLTSKQCLAALDKFGVPCSAYRTVAEAMADPQTAHRQALAEVHDDAGSFKVLNLPF
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEECCE
RMSAANPSPNPRVARLGEHTKAVLQQAGYSDEDIAQFGAR
EEECCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCC
>Mature Secondary Structure 
TVETRTQKPLATTANARALDGLRVLDFSTTIAGPHCTRMLSDMGAEVIKIEAADGDTMR
CCCCCCCCCCCCCCCCHHHCCEEEEEECCCCCCHHHHHHHHHCCCEEEEEECCCCCCCC
NRPPVREACSTAFGQLNVGKKSIVLDLKSPDGLEAVQRLVAGADILVENFRPGVMQRLQM
CCCCHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHCHHHHHHCCCHHHHHHHHH
DYASLRGFNPELIYCSISGYGQTGPSAELPAYAPAIHAASGFDLAHLAYQPGRDRPDYCG
HHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHCCCCCCHHHHHCCCCCCCCCHHH
IYLADVVSGIYAYGAITSALYQRVRTGEGQHIDVSMLEAMLTLTLNEMQWSQFPVTLPGR
EEHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHCCCCCCCEECCCC
PQFGPVETSDGYVMIAVASEKSFRSFMLAAERPDLITDPRFEKYADRRLAWGELMDTIET
CCCCCCCCCCCEEEEEEECCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
SWSRKLTSKQCLAALDKFGVPCSAYRTVAEAMADPQTAHRQALAEVHDDAGSFKVLNLPF
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEECCE
RMSAANPSPNPRVARLGEHTKAVLQQAGYSDEDIAQFGAR
EEECCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]