Click here to switch to the map view.

The map label for this gene is yfdC [H]

Identifier: 192290044

GI number: 192290044

Start: 1761892

End: 1762764

Strand: Reverse

Name: yfdC [H]

Synonym: Rpal_1645

Alternate gene names: 192290044

Gene position: 1762764-1761892 (Counterclockwise)

Preceding gene: 192290045

Following gene: 192290037

Centisome position: 30.69

GC content: 64.03

Gene sequence:

>873_bases
ATGGCGTCAGCGCAGCACCACACAGCATCCACCTCGTCGCGCCGGGCCTACGATCCACAGGACAATCACGCCGCGATCAC
CAAGCGCGAGGTCGAGGACGTCGAGTCGCGATCGAGCCCGCGCACGCCGGTAATCTACGAGATCGTCCGACGCCTCGGCG
AAGAGGAAATGGCGCGACCGGCGGTGTCGCTGTGGTGGTCGGGGTTCGCCGCCGGCCTGTCGATCAGCTTCTCGCTGTTG
GCGCAGGCAGTGCTGCAGCAGCATCTCGAACCGACCGGTTGGCGTACGCTGGTCACCAGCTTCGGCTATTCGATCGGCTT
TCTGATGGTAGTGCTGGCCCGTCAGCAGCTGCTCACCGAGAACACCATCACGGTGGTGCTGCCGGTGATGGCGAATTGGT
CGCTCGGCACACTCGGCCGCGCCGCACGGCTGTGGGCCGTGGTGCTGCTGGCGAATTTCGCCGGCACGCTGTTCGCGGCA
GCGTTCTGCAGCTTCACGCCGGCAATCACACCGGAGCTGAAGCGCGAGATGCTGGAGATCAGCCGCCATGTCGTGGAATA
CGGCTGGTTCGCCTCGATGATGAAGGCGATCGCCGCCGGCTTCCTGATCGCCGCGATGGTGTGGCTACTGCCGAGCGCGG
AAGTCAGTCAGATCTGGGTCATCGTGGTGATGACCTGGCTGATCTCGGCGGGCGGCTTCATGCACATCGTCGCCGGAAGC
ATGGAGGCGTTCATGCTGATGTTGGACGGCTCGGTCAGCGTCGCCCAGGTGTTCGGGAGGTTTGTCGTGCCGGTGCTGAT
CGGTAACGTCATCGGTGGCACCGCACTGTTTGCCCTGCTCACCTACGCGCAGGTGATGAAAGAGATGGAGTGA

Upstream 100 bases:

>100_bases
CGGATCGGCTGGAACTTCCATCCCGCGCCATACTTGATCTGCGGTTTCCGCTAGCCGGTGGGCGATCCTGCTTGCGCGTC
TCTGCGGCCAAGGACCGTCG

Downstream 100 bases:

>100_bases
GCCTCGCCCGGTCACCCCATCAGATTGCGATAAATGCCGGGTAGCGCGGCGGGTAGCCGACCGATGTGGCCGACGATGGC
ATAACCGGCGCGACCGAACA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 289

Protein sequence:

>290_residues
MASAQHHTASTSSRRAYDPQDNHAAITKREVEDVESRSSPRTPVIYEIVRRLGEEEMARPAVSLWWSGFAAGLSISFSLL
AQAVLQQHLEPTGWRTLVTSFGYSIGFLMVVLARQQLLTENTITVVLPVMANWSLGTLGRAARLWAVVLLANFAGTLFAA
AFCSFTPAITPELKREMLEISRHVVEYGWFASMMKAIAAGFLIAAMVWLLPSAEVSQIWVIVVMTWLISAGGFMHIVAGS
MEAFMLMLDGSVSVAQVFGRFVVPVLIGNVIGGTALFALLTYAQVMKEME

Sequences:

>Translated_290_residues
MASAQHHTASTSSRRAYDPQDNHAAITKREVEDVESRSSPRTPVIYEIVRRLGEEEMARPAVSLWWSGFAAGLSISFSLL
AQAVLQQHLEPTGWRTLVTSFGYSIGFLMVVLARQQLLTENTITVVLPVMANWSLGTLGRAARLWAVVLLANFAGTLFAA
AFCSFTPAITPELKREMLEISRHVVEYGWFASMMKAIAAGFLIAAMVWLLPSAEVSQIWVIVVMTWLISAGGFMHIVAGS
MEAFMLMLDGSVSVAQVFGRFVVPVLIGNVIGGTALFALLTYAQVMKEME
>Mature_289_residues
ASAQHHTASTSSRRAYDPQDNHAAITKREVEDVESRSSPRTPVIYEIVRRLGEEEMARPAVSLWWSGFAAGLSISFSLLA
QAVLQQHLEPTGWRTLVTSFGYSIGFLMVVLARQQLLTENTITVVLPVMANWSLGTLGRAARLWAVVLLANFAGTLFAAA
FCSFTPAITPELKREMLEISRHVVEYGWFASMMKAIAAGFLIAAMVWLLPSAEVSQIWVIVVMTWLISAGGFMHIVAGSM
EAFMLMLDGSVSVAQVFGRFVVPVLIGNVIGGTALFALLTYAQVMKEME

Specific function: Unknown

COG id: COG2116

COG function: function code P; Formate/nitrite family of transporters

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788689, Length=261, Percent_Identity=40.9961685823755, Blast_Score=201, Evalue=5e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000292 [H]

Pfam domain/function: PF01226 Form_Nir_trans [H]

EC number: NA

Molecular weight: Translated: 31761; Mature: 31629

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASAQHHTASTSSRRAYDPQDNHAAITKREVEDVESRSSPRTPVIYEIVRRLGEEEMARP
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCHHHHHHH
AVSLWWSGFAAGLSISFSLLAQAVLQQHLEPTGWRTLVTSFGYSIGFLMVVLARQQLLTE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NTITVVLPVMANWSLGTLGRAARLWAVVLLANFAGTLFAAAFCSFTPAITPELKREMLEI
CCHHEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
SRHVVEYGWFASMMKAIAAGFLIAAMVWLLPSAEVSQIWVIVVMTWLISAGGFMHIVAGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHH
MEAFMLMLDGSVSVAQVFGRFVVPVLIGNVIGGTALFALLTYAQVMKEME
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ASAQHHTASTSSRRAYDPQDNHAAITKREVEDVESRSSPRTPVIYEIVRRLGEEEMARP
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCHHHHHHH
AVSLWWSGFAAGLSISFSLLAQAVLQQHLEPTGWRTLVTSFGYSIGFLMVVLARQQLLTE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NTITVVLPVMANWSLGTLGRAARLWAVVLLANFAGTLFAAAFCSFTPAITPELKREMLEI
CCHHEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
SRHVVEYGWFASMMKAIAAGFLIAAMVWLLPSAEVSQIWVIVVMTWLISAGGFMHIVAGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHH
MEAFMLMLDGSVSVAQVFGRFVVPVLIGNVIGGTALFALLTYAQVMKEME
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]