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The map label for this gene is ydhC [H]

Identifier: 192290027

GI number: 192290027

Start: 1743053

End: 1743868

Strand: Reverse

Name: ydhC [H]

Synonym: Rpal_1628

Alternate gene names: 192290027

Gene position: 1743868-1743053 (Counterclockwise)

Preceding gene: 192290037

Following gene: 192290026

Centisome position: 30.36

GC content: 68.26

Gene sequence:

>816_bases
ATGGCAGCGACAACCTATCGCAGGCCCGCGGGCGACGATGAGGCCGCACCGGTGGGTCGGTTCTCTCTGCGCACACTGCC
CGACCAGATCGCCGAGGAGCTCGGCGCCGACATCGTCTCCGGGCGTCGCAAGGCGGGCGAGCGTCTGGTCGAACTCGACC
TCGCGCGTGACTTCGGCGTCAGCCGCGGCCCGATCCGCGAGGCGATCCGCATTCTCGAACGACGCCGTCTGGTCGAACTC
AATCCGCGGCGCGGCGCCTACGTCAAACCGCTGTCGCTGAAGTCGGTCGCCGATCTGTTCAACGTCCGAACCGCGCTGTC
GATGCTGGCAGTGCGGACGATGGCGACTTCGCCGATCGAGAGCTTCGTCGAGACGCTGGCGCGGCGCTGCGACGAGTTGA
ACGCGGGCGTCGAGATCGACGATCCGCTCAGCTTCGCCCGCACTACGACGCGGGCGGTCCGCACCATCGCCCGCGGCTCC
GGCAACGAGCTGCTGGTCGAGCTGCTCGCCGACCTCGCAAATCAGACGGTGTGGACGACGATCTGGAAATCACCACTCGA
TTACCAGACCCGCAAGATCCGCCGGCAGAGCGCCGACCTGATGGCCTCGACACTGCGGGCGATCCGTCAGCGCCGGCCCA
ATGCCGCCGAAACGCACTACCGCGAACTGCTCGAAGGCGATCGCGACCGGGCGCTTGCGACGCTGTCGCGGATCCGCGGC
GAAGCGATCGACTTCAACGGCATTGCGGCTGCAGAGAGCGCCGGCGTCGTAGGACGTTCGCCCCGCCCCTCCGGACGCCC
TGCCGTGCAACCCTGA

Upstream 100 bases:

>100_bases
AGGCCATCAAAGGGCACCGGTTGTCGATTGTCAACAATCGACTGTCAGGCTACGAAGAAGAGCGACACGCGAGCCGCCGT
CTGGAAGCCGAGGAGACAAC

Downstream 100 bases:

>100_bases
CAGAGGCCTTTGTACGCCAAAAGACGCTTCTTTCGCCCCAGAGCGTCGTCACCGCTAGCTACATAACGCCTTGAATTTAC
TCATTAATAGCTATTATTAC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 270

Protein sequence:

>271_residues
MAATTYRRPAGDDEAAPVGRFSLRTLPDQIAEELGADIVSGRRKAGERLVELDLARDFGVSRGPIREAIRILERRRLVEL
NPRRGAYVKPLSLKSVADLFNVRTALSMLAVRTMATSPIESFVETLARRCDELNAGVEIDDPLSFARTTTRAVRTIARGS
GNELLVELLADLANQTVWTTIWKSPLDYQTRKIRRQSADLMASTLRAIRQRRPNAAETHYRELLEGDRDRALATLSRIRG
EAIDFNGIAAAESAGVVGRSPRPSGRPAVQP

Sequences:

>Translated_271_residues
MAATTYRRPAGDDEAAPVGRFSLRTLPDQIAEELGADIVSGRRKAGERLVELDLARDFGVSRGPIREAIRILERRRLVEL
NPRRGAYVKPLSLKSVADLFNVRTALSMLAVRTMATSPIESFVETLARRCDELNAGVEIDDPLSFARTTTRAVRTIARGS
GNELLVELLADLANQTVWTTIWKSPLDYQTRKIRRQSADLMASTLRAIRQRRPNAAETHYRELLEGDRDRALATLSRIRG
EAIDFNGIAAAESAGVVGRSPRPSGRPAVQP
>Mature_270_residues
AATTYRRPAGDDEAAPVGRFSLRTLPDQIAEELGADIVSGRRKAGERLVELDLARDFGVSRGPIREAIRILERRRLVELN
PRRGAYVKPLSLKSVADLFNVRTALSMLAVRTMATSPIESFVETLARRCDELNAGVEIDDPLSFARTTTRAVRTIARGSG
NELLVELLADLANQTVWTTIWKSPLDYQTRKIRRQSADLMASTLRAIRQRRPNAAETHYRELLEGDRDRALATLSRIRGE
AIDFNGIAAAESAGVVGRSPRPSGRPAVQP

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 29955; Mature: 29823

Theoretical pI: Translated: 10.87; Mature: 10.87

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAATTYRRPAGDDEAAPVGRFSLRTLPDQIAEELGADIVSGRRKAGERLVELDLARDFGV
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCC
SRGPIREAIRILERRRLVELNPRRGAYVKPLSLKSVADLFNVRTALSMLAVRTMATSPIE
CCCHHHHHHHHHHHHHHHEECCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
SFVETLARRCDELNAGVEIDDPLSFARTTTRAVRTIARGSGNELLVELLADLANQTVWTT
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHH
IWKSPLDYQTRKIRRQSADLMASTLRAIRQRRPNAAETHYRELLEGDRDRALATLSRIRG
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHCC
EAIDFNGIAAAESAGVVGRSPRPSGRPAVQP
CCCCCCCCHHHHCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AATTYRRPAGDDEAAPVGRFSLRTLPDQIAEELGADIVSGRRKAGERLVELDLARDFGV
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCC
SRGPIREAIRILERRRLVELNPRRGAYVKPLSLKSVADLFNVRTALSMLAVRTMATSPIE
CCCHHHHHHHHHHHHHHHEECCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
SFVETLARRCDELNAGVEIDDPLSFARTTTRAVRTIARGSGNELLVELLADLANQTVWTT
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHH
IWKSPLDYQTRKIRRQSADLMASTLRAIRQRRPNAAETHYRELLEGDRDRALATLSRIRG
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHCC
EAIDFNGIAAAESAGVVGRSPRPSGRPAVQP
CCCCCCCCHHHHCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]