| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
Click here to switch to the map view.
The map label for this gene is ycgI [H]
Identifier: 192289989
GI number: 192289989
Start: 1701237
End: 1702076
Strand: Reverse
Name: ycgI [H]
Synonym: Rpal_1590
Alternate gene names: 192289989
Gene position: 1702076-1701237 (Counterclockwise)
Preceding gene: 192289990
Following gene: 192289988
Centisome position: 29.63
GC content: 67.02
Gene sequence:
>840_bases ATGATCCTGACCGAGCAAGAGAAGGCCGAAGTCGAGGCCAACCGCCGGCGCTACGAGCAGCACAAGGCGCTGGGCCAGCA GCAGGCGCCGAAGGCCCTGCCGCCGCCGACGCCGCGCGACGGCGCGCCGATCGCACCCGAGTCGATCATCCATCGCGAGA CCGTGCCGGGCGGCTGGTACTACGTGACCAAGCTCGGCCGCGGCGAGGCGGTGCGCATCATCAACACCAGTGGCACGTCC TGCGTCAGCATCCAGGCCTGGAATGCGCGCGATCCGAGCGAGCGGTTGAACCATGCCGACACCATCAAGGTACAGTGGGC GGCGTCCTTGCGCAAAGGCCGTGTGATCCTGTCCGACATGGGCCGTGCGCTACTGTCGATCATCGAGGACACCAGCGGTG CGCACGACACCATGGTCGGCGGCTCCAACGCCGCGACCAATGCGGCTCGCTACGGCGCCGGCAGCTTCCGCAGCACCCGC GACAACTTCGTGCTCGCCGCCGGCAAGCTCGGGCTCGATCGCCGCGACGTGCACCCCTCGATCGCCTTCTTCGCCCCGGT CGCCGTCGACTCGCAGGGCCGGTTCGAATGGCACGGTGAGCGTCGCAACAAAGGCGACTTCGTCGACCTGCGCGCCGAAC TCGACGTGCTGATCGCGGTATCAAACTGTCCGCACCCGCTCGATCCATCGCCAAGTTACGCACCGGGCGACATCGACCTA ATTCGCTACCAGGCACCTCAGCCCGTTTCCGACGATCTGTGCCGCACCGTGTCGCTCGAAGCCAAGCGCGCGTTCGAGAA CAACGCGTTCTATCTCGCCGGCGCTGCAGGGAGGGCTTGA
Upstream 100 bases:
>100_bases AGCCGCGCACCGACCATCCAATCCGCTCCGGCCGGGACGACCCGGCCGCACAGGGAGCATGAGCCGGGACGACCCGGCGT TTGTTCACCGTGAGGACAGC
Downstream 100 bases:
>100_bases GCATGACCACGATTCCCGCTTCCGCCCGCATCGTGCTTGACACCGAGATCCCGGCGCGCGTGCCGTGGTCGGCGACCATC CGCAAGGGGCAGACGCTGCG
Product: urea carboxylase-associated protein 2
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 279; Mature: 279
Protein sequence:
>279_residues MILTEQEKAEVEANRRRYEQHKALGQQQAPKALPPPTPRDGAPIAPESIIHRETVPGGWYYVTKLGRGEAVRIINTSGTS CVSIQAWNARDPSERLNHADTIKVQWAASLRKGRVILSDMGRALLSIIEDTSGAHDTMVGGSNAATNAARYGAGSFRSTR DNFVLAAGKLGLDRRDVHPSIAFFAPVAVDSQGRFEWHGERRNKGDFVDLRAELDVLIAVSNCPHPLDPSPSYAPGDIDL IRYQAPQPVSDDLCRTVSLEAKRAFENNAFYLAGAAGRA
Sequences:
>Translated_279_residues MILTEQEKAEVEANRRRYEQHKALGQQQAPKALPPPTPRDGAPIAPESIIHRETVPGGWYYVTKLGRGEAVRIINTSGTS CVSIQAWNARDPSERLNHADTIKVQWAASLRKGRVILSDMGRALLSIIEDTSGAHDTMVGGSNAATNAARYGAGSFRSTR DNFVLAAGKLGLDRRDVHPSIAFFAPVAVDSQGRFEWHGERRNKGDFVDLRAELDVLIAVSNCPHPLDPSPSYAPGDIDL IRYQAPQPVSDDLCRTVSLEAKRAFENNAFYLAGAAGRA >Mature_279_residues MILTEQEKAEVEANRRRYEQHKALGQQQAPKALPPPTPRDGAPIAPESIIHRETVPGGWYYVTKLGRGEAVRIINTSGTS CVSIQAWNARDPSERLNHADTIKVQWAASLRKGRVILSDMGRALLSIIEDTSGAHDTMVGGSNAATNAARYGAGSFRSTR DNFVLAAGKLGLDRRDVHPSIAFFAPVAVDSQGRFEWHGERRNKGDFVDLRAELDVLIAVSNCPHPLDPSPSYAPGDIDL IRYQAPQPVSDDLCRTVSLEAKRAFENNAFYLAGAAGRA
Specific function: Unknown
COG id: COG3665
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018959 [H]
Pfam domain/function: PF09347 DUF1989 [H]
EC number: NA
Molecular weight: Translated: 30424; Mature: 30424
Theoretical pI: Translated: 8.10; Mature: 8.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MILTEQEKAEVEANRRRYEQHKALGQQQAPKALPPPTPRDGAPIAPESIIHRETVPGGWY CCCCCCHHHHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEE YVTKLGRGEAVRIINTSGTSCVSIQAWNARDPSERLNHADTIKVQWAASLRKGRVILSDM EEEEECCCCEEEEEECCCCEEEEEEECCCCCHHHHCCCCCEEEEEEEECCCCCEEHHHHH GRALLSIIEDTSGAHDTMVGGSNAATNAARYGAGSFRSTRDNFVLAAGKLGLDRRDVHPS HHHHHHHHHCCCCCCCEEECCCCCCCCHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCC IAFFAPVAVDSQGRFEWHGERRNKGDFVDLRAELDVLIAVSNCPHPLDPSPSYAPGDIDL EEEEEEEEECCCCCEEECCCCCCCCCEEEEEECEEEEEEECCCCCCCCCCCCCCCCCEEE IRYQAPQPVSDDLCRTVSLEAKRAFENNAFYLAGAAGRA EEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC >Mature Secondary Structure MILTEQEKAEVEANRRRYEQHKALGQQQAPKALPPPTPRDGAPIAPESIIHRETVPGGWY CCCCCCHHHHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEE YVTKLGRGEAVRIINTSGTSCVSIQAWNARDPSERLNHADTIKVQWAASLRKGRVILSDM EEEEECCCCEEEEEECCCCEEEEEEECCCCCHHHHCCCCCEEEEEEEECCCCCEEHHHHH GRALLSIIEDTSGAHDTMVGGSNAATNAARYGAGSFRSTRDNFVLAAGKLGLDRRDVHPS HHHHHHHHHCCCCCCCEEECCCCCCCCHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCC IAFFAPVAVDSQGRFEWHGERRNKGDFVDLRAELDVLIAVSNCPHPLDPSPSYAPGDIDL EEEEEEEEECCCCCEEECCCCCCCCCEEEEEECEEEEEEECCCCCCCCCCCCCCCCCEEE IRYQAPQPVSDDLCRTVSLEAKRAFENNAFYLAGAAGRA EEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377; 10568751 [H]