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The map label for this gene is ybaQ [C]

Identifier: 192289893

GI number: 192289893

Start: 1565047

End: 1565370

Strand: Reverse

Name: ybaQ [C]

Synonym: Rpal_1484

Alternate gene names: 192289893

Gene position: 1565370-1565047 (Counterclockwise)

Preceding gene: 192289894

Following gene: 192289889

Centisome position: 27.25

GC content: 64.2

Gene sequence:

>324_bases
ATGAGACCGACGATGCGGACAAAGACCGACCTGCGCATGAAAAGCCCGGCACACCCCGGCAGCTTCGTGAAACACGAGAT
CATCGAACCGCTCCGGTTGTCCGTCACCGAAGCCGCGAAGGTTTTGGGCGTCACCCGGCCGGCGCTGTCCGCGGTTCTGA
ACGAGCGCGCCTCGCTGTCGTCCGAGATGGCGCTCCGCATCGAAAAGGCGTTCGGCGTGTCGATGGACACTCTGATGCGC
ATGCAGAACAGCTTCGATATCGCCGAGGCGCGCAAGCGCGCCGGCGAGATCAAGATTGCGCGCTACGCGGGCGCGGCGGA
ATAG

Upstream 100 bases:

>100_bases
TCTGTTCGTCACCAAGAACTGGCGGCTGACCTTCCAGATCGACAAGGATGGGATCGAGATCATCGATCTCGACTACGAGG
ACTACCATTAGGACGCTTTG

Downstream 100 bases:

>100_bases
CAGACCCGTAGGACACATAAGCCGAAGGCGTCCTACCCTGCTTGCGCAGAGGTGGGTTACGGCTGCGCCTTACCCCTACG
GCACCTCGTATTTGGACGGC

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: ORF 1 [H]

Number of amino acids: Translated: 107; Mature: 107

Protein sequence:

>107_residues
MRPTMRTKTDLRMKSPAHPGSFVKHEIIEPLRLSVTEAAKVLGVTRPALSAVLNERASLSSEMALRIEKAFGVSMDTLMR
MQNSFDIAEARKRAGEIKIARYAGAAE

Sequences:

>Translated_107_residues
MRPTMRTKTDLRMKSPAHPGSFVKHEIIEPLRLSVTEAAKVLGVTRPALSAVLNERASLSSEMALRIEKAFGVSMDTLMR
MQNSFDIAEARKRAGEIKIARYAGAAE
>Mature_107_residues
MRPTMRTKTDLRMKSPAHPGSFVKHEIIEPLRLSVTEAAKVLGVTRPALSAVLNERASLSSEMALRIEKAFGVSMDTLMR
MQNSFDIAEARKRAGEIKIARYAGAAE

Specific function: Unknown

COG id: COG3093

COG function: function code R; Plasmid maintenance system antidote protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081745, Length=76, Percent_Identity=35.5263157894737, Blast_Score=64, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013430
- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 11814; Mature: 11814

Theoretical pI: Translated: 10.89; Mature: 10.89

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.5 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
6.5 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPTMRTKTDLRMKSPAHPGSFVKHEIIEPLRLSVTEAAKVLGVTRPALSAVLNERASLS
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
SEMALRIEKAFGVSMDTLMRMQNSFDIAEARKRAGEIKIARYAGAAE
HHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHCCCEEEEECCCCCC
>Mature Secondary Structure
MRPTMRTKTDLRMKSPAHPGSFVKHEIIEPLRLSVTEAAKVLGVTRPALSAVLNERASLS
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
SEMALRIEKAFGVSMDTLMRMQNSFDIAEARKRAGEIKIARYAGAAE
HHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7937823 [H]