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The map label for this gene is ygcA [C]

Identifier: 192289445

GI number: 192289445

Start: 1080635

End: 1081876

Strand: Reverse

Name: ygcA [C]

Synonym: Rpal_1018

Alternate gene names: 192289445

Gene position: 1081876-1080635 (Counterclockwise)

Preceding gene: 192289446

Following gene: 192289442

Centisome position: 18.83

GC content: 67.55

Gene sequence:

>1242_bases
ATGATCCAAACCCTGACGATCGATCAGCTCGGCCACCGCGGCGACGGCGTCAGCCTGTCGCAAGGCGGCGCCACTTACGT
GCCGTTCGCCCTGCCCGGCGAAACCGTCGAGGCCGAACCGGTGCAGGGTCATCCCGACCGCCGCAAACTGCTGCGCGTCG
AGATCCCCAGCCCCGACCGGGTGGCGCCGTTCTGTCCGCATTTCGGCGTGTGCGGCGGCTGCGCGATCCAGCATTTGCGC
GACGAGCCGTATCGGACGTGGAAACGCAACCTGGTGATCGAGACGCTGGCCCAAGCCGGGATCGACGTTCCGGTCGACCC
GCTGATCGATGCCCACGGCGCCGGCCGCCGCCGCATCACGCTGCATGCCCGCCGCGGCACGCACGACATTCTCAAGGTCG
GATTCAGCGCCACCGCGAGCCACGACATCATCGGCATCGATCACTGCCCGATCCTCGATCCGGGGCTGAATGGCGCACTG
GAAGCGGCCTGGGCGCTGGCCGAAGCGCTGACGCCGGTCGGCAAGCCGCTCGATATTCAAGTCACCGCCACCGAGAACGG
CCTCGATATTGACGTGCGCGGCTCCGGGCCGCTGCCGCCGAAGATGATCACTTCACTCTCGCAACTCGCCGAGAAGCACA
AGCTCGCCCGGCTGACGCGCCACGGTGAATTAGTTCTGCTGCGCCGGCCGCCGGTGGTGGCGATCGGCAAGGCCAAAGTG
ACGCTGCCGCCGGGCGCGTTCCTGCAGGCGACGGCGCTCGGCGAACAGACGCTGGCGGAGCTGGCGATGGCGAATCTCGG
CCGCGCCAAGCAGGTCGCGGATTTGTTCTGCGGCGTCGGCCCATTCGTGCTGCGTCTCGCCGAAAAGGCGCGAGTATTCG
CCTGTGACAGCGATGCGCCGGCGGTCACGGCGCTGCAGAAGGCCGCGCCGGCAACGTCGGGGCTGAAGCCGGTGAAGGCC
GAAGCGCGCGACCTGTTTCGGCGCCCGCTGGCACCACCCGAACTCCGCGACTTCGACGCCGTGCTGTTCGATCCCCCGCG
CCAGGGCGCGCAGGCGCAGGCCACGCAGCTCGCAGCCAGCCGGGTGCCTCTGGTGATCGCCGTCTCCTGTAACGCCACCA
CCTTCGCCCGCGATGCGAAACTGTTGATCGATGGTGGCTACAAGCTCGAACGCGTGATCCCGGTCGATCAGTTCAAGTAC
ACGCCTCATGTCGAATTGGTGGCGGTGTTACGAAAGCAGTAG

Upstream 100 bases:

>100_bases
TGGCGATTCCACCGGCTGACGCGCGACGCGATGGCCGCGGCCGTCGCCGCCTGATCACTTCCGGCTTTACGGCCTGCCGG
CCGGGGACTATCGCATCGCC

Downstream 100 bases:

>100_bases
TTCAAAGCGTCATTCCGGGGCGCTTGCGAACGCGAGCGAACCGGAATCTGGAGCTGTCGAGCAACCGGCATTTCAACATG
TCGGGATTCCGGGTTCACGC

Product: (uracil-5)-methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 413; Mature: 413

Protein sequence:

>413_residues
MIQTLTIDQLGHRGDGVSLSQGGATYVPFALPGETVEAEPVQGHPDRRKLLRVEIPSPDRVAPFCPHFGVCGGCAIQHLR
DEPYRTWKRNLVIETLAQAGIDVPVDPLIDAHGAGRRRITLHARRGTHDILKVGFSATASHDIIGIDHCPILDPGLNGAL
EAAWALAEALTPVGKPLDIQVTATENGLDIDVRGSGPLPPKMITSLSQLAEKHKLARLTRHGELVLLRRPPVVAIGKAKV
TLPPGAFLQATALGEQTLAELAMANLGRAKQVADLFCGVGPFVLRLAEKARVFACDSDAPAVTALQKAAPATSGLKPVKA
EARDLFRRPLAPPELRDFDAVLFDPPRQGAQAQATQLAASRVPLVIAVSCNATTFARDAKLLIDGGYKLERVIPVDQFKY
TPHVELVAVLRKQ

Sequences:

>Translated_413_residues
MIQTLTIDQLGHRGDGVSLSQGGATYVPFALPGETVEAEPVQGHPDRRKLLRVEIPSPDRVAPFCPHFGVCGGCAIQHLR
DEPYRTWKRNLVIETLAQAGIDVPVDPLIDAHGAGRRRITLHARRGTHDILKVGFSATASHDIIGIDHCPILDPGLNGAL
EAAWALAEALTPVGKPLDIQVTATENGLDIDVRGSGPLPPKMITSLSQLAEKHKLARLTRHGELVLLRRPPVVAIGKAKV
TLPPGAFLQATALGEQTLAELAMANLGRAKQVADLFCGVGPFVLRLAEKARVFACDSDAPAVTALQKAAPATSGLKPVKA
EARDLFRRPLAPPELRDFDAVLFDPPRQGAQAQATQLAASRVPLVIAVSCNATTFARDAKLLIDGGYKLERVIPVDQFKY
TPHVELVAVLRKQ
>Mature_413_residues
MIQTLTIDQLGHRGDGVSLSQGGATYVPFALPGETVEAEPVQGHPDRRKLLRVEIPSPDRVAPFCPHFGVCGGCAIQHLR
DEPYRTWKRNLVIETLAQAGIDVPVDPLIDAHGAGRRRITLHARRGTHDILKVGFSATASHDIIGIDHCPILDPGLNGAL
EAAWALAEALTPVGKPLDIQVTATENGLDIDVRGSGPLPPKMITSLSQLAEKHKLARLTRHGELVLLRRPPVVAIGKAKV
TLPPGAFLQATALGEQTLAELAMANLGRAKQVADLFCGVGPFVLRLAEKARVFACDSDAPAVTALQKAAPATSGLKPVKA
EARDLFRRPLAPPELRDFDAVLFDPPRQGAQAQATQLAASRVPLVIAVSCNATTFARDAKLLIDGGYKLERVIPVDQFKY
TPHVELVAVLRKQ

Specific function: Could Be A 23s rRNA (Uracil-5-)-Methyltransferase. [C]

COG id: COG2265

COG function: function code J; SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RNA M5U methyltransferase family [H]

Homologues:

Organism=Escherichia coli, GI1789148, Length=433, Percent_Identity=28.4064665127021, Blast_Score=148, Evalue=6e-37,
Organism=Escherichia coli, GI1787083, Length=148, Percent_Identity=34.4594594594595, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016027
- InterPro:   IPR010280 [H]

Pfam domain/function: PF05958 tRNA_U5-meth_tr [H]

EC number: NA

Molecular weight: Translated: 44262; Mature: 44262

Theoretical pI: Translated: 8.69; Mature: 8.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQTLTIDQLGHRGDGVSLSQGGATYVPFALPGETVEAEPVQGHPDRRKLLRVEIPSPDR
CCEEEEHHHCCCCCCCCEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCC
VAPFCPHFGVCGGCAIQHLRDEPYRTWKRNLVIETLAQAGIDVPVDPLIDAHGAGRRRIT
CCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEE
LHARRGTHDILKVGFSATASHDIIGIDHCPILDPGLNGALEAAWALAEALTPVGKPLDIQ
EEECCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEE
VTATENGLDIDVRGSGPLPPKMITSLSQLAEKHKLARLTRHGELVLLRRPPVVAIGKAKV
EEECCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEECCEEE
TLPPGAFLQATALGEQTLAELAMANLGRAKQVADLFCGVGPFVLRLAEKARVFACDSDAP
ECCCCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHCEEEEECCCCC
AVTALQKAAPATSGLKPVKAEARDLFRRPLAPPELRDFDAVLFDPPRQGAQAQATQLAAS
HHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHC
RVPLVIAVSCNATTFARDAKLLIDGGYKLERVIPVDQFKYTPHVELVAVLRKQ
CCCEEEEEECCCEEECCCCEEEEECCEEEEEEECHHHCCCCCCHHHHHHHHCC
>Mature Secondary Structure
MIQTLTIDQLGHRGDGVSLSQGGATYVPFALPGETVEAEPVQGHPDRRKLLRVEIPSPDR
CCEEEEHHHCCCCCCCCEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCC
VAPFCPHFGVCGGCAIQHLRDEPYRTWKRNLVIETLAQAGIDVPVDPLIDAHGAGRRRIT
CCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEE
LHARRGTHDILKVGFSATASHDIIGIDHCPILDPGLNGALEAAWALAEALTPVGKPLDIQ
EEECCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEE
VTATENGLDIDVRGSGPLPPKMITSLSQLAEKHKLARLTRHGELVLLRRPPVVAIGKAKV
EEECCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEECCEEE
TLPPGAFLQATALGEQTLAELAMANLGRAKQVADLFCGVGPFVLRLAEKARVFACDSDAP
ECCCCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHCEEEEECCCCC
AVTALQKAAPATSGLKPVKAEARDLFRRPLAPPELRDFDAVLFDPPRQGAQAQATQLAAS
HHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHC
RVPLVIAVSCNATTFARDAKLLIDGGYKLERVIPVDQFKYTPHVELVAVLRKQ
CCCEEEEEECCCEEECCCCEEEEECCEEEEEEECHHHCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA