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The map label for this gene is dppB [H]

Identifier: 192289259

GI number: 192289259

Start: 876448

End: 877401

Strand: Reverse

Name: dppB [H]

Synonym: Rpal_0831

Alternate gene names: 192289259

Gene position: 877401-876448 (Counterclockwise)

Preceding gene: 192289260

Following gene: 192289258

Centisome position: 15.27

GC content: 66.88

Gene sequence:

>954_bases
GTGCTCGCCTATATCGCCCGCCGCATCGTCTATGTCGTTCCGATCGTCCTCAGCGTCGCGCTGGTGTGTTTCCTGCTGGT
GCACATCACGCCGGGTGATCCGCTGGTCGCGGTGTTGCCAGCGGACGCCTCGCAGGAACTCGCGGCGCAGCTCCGCGCCG
CTTACGGCTTCGACCGGCCGCTGCCGGTGCAGTTCGGGCTGTGGCTGTGGAAGGCGGTGCACGGCGATCTCGGCACCTCG
ATCGCCACCGGCCGGCCGGTGCTGGCCGAGGTGATGCGTGCGGTCTCCAACACCGTGACGCTGGCGATCGCGGCGGCAAT
CATCGGGTTCTCGTTCGGCCTGCTGTTCGGCCTGATCGCCGGTTACTTCCGCGATACCTGGATCGACAAGCTGGCCACCG
GCATCGCCATCGCCGGCGTCTCGGTGCCGCATTACTGGCTCGGCATGGTGCTGGTGATCGTGTTCTCGGTACAGCTCAAC
TGGCTGCCCGCAGTCGGCGCCGGCCCCGGCGGCTCCGGGCAATGGGCGTGGGACTGGGCGCATCTGCGCTATCTGATCCT
GCCGGCGATCACCACATCGGTCATTCCAATGGGTATCGTCACCCGCACGGTGCGGGCGCTGACCGGCGATATCCTGTCGC
AGGATTTCGTCGAGGCGCTGCGCGCCAAGGGTCTGCGCGAGACCGGCGTATTCGGTCACGTCATCAAGAACGCGGCCCCG
ACCGCACTCGCGGTGATGGGCCTGCAGCTCGGCTACATGCTCGGCGGCTCGATCCTGGTCGAGACGGTGTTCTCTTGGCC
GGGCTCCGGCCTGCTCCTCAACTCTGCGATCTTCCAGCGCGACCTGCCGCTGCTGCAGGGCACGATCCTGGTACTGGCGC
TGTTCTTCGTGCTGCTCAATCTCTCGGTCGACATCGCCCAGGCGCTGATCGATCCGCGGATCAAGCGGGCCTGA

Upstream 100 bases:

>100_bases
TCGCCCCCTCATCCGGCGCGGACGTTGTCCGCGCCACCTTCTCCCACGAGGGGAGAAGGGCAAGGAAGTCGTCCTGGTCT
GACTGAATCGAAGGTGCACC

Downstream 100 bases:

>100_bases
TGTCATGGGAGCTCCGACGATGAGTTTGACCGCTTCCGATGCCGCACCGCAGACCGCCCCCGCAGGCAAAGCCCGCGGCT
ATTGGGCCAATGTCGGCCGT

Product: ABC transporter inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MLAYIARRIVYVVPIVLSVALVCFLLVHITPGDPLVAVLPADASQELAAQLRAAYGFDRPLPVQFGLWLWKAVHGDLGTS
IATGRPVLAEVMRAVSNTVTLAIAAAIIGFSFGLLFGLIAGYFRDTWIDKLATGIAIAGVSVPHYWLGMVLVIVFSVQLN
WLPAVGAGPGGSGQWAWDWAHLRYLILPAITTSVIPMGIVTRTVRALTGDILSQDFVEALRAKGLRETGVFGHVIKNAAP
TALAVMGLQLGYMLGGSILVETVFSWPGSGLLLNSAIFQRDLPLLQGTILVLALFFVLLNLSVDIAQALIDPRIKRA

Sequences:

>Translated_317_residues
MLAYIARRIVYVVPIVLSVALVCFLLVHITPGDPLVAVLPADASQELAAQLRAAYGFDRPLPVQFGLWLWKAVHGDLGTS
IATGRPVLAEVMRAVSNTVTLAIAAAIIGFSFGLLFGLIAGYFRDTWIDKLATGIAIAGVSVPHYWLGMVLVIVFSVQLN
WLPAVGAGPGGSGQWAWDWAHLRYLILPAITTSVIPMGIVTRTVRALTGDILSQDFVEALRAKGLRETGVFGHVIKNAAP
TALAVMGLQLGYMLGGSILVETVFSWPGSGLLLNSAIFQRDLPLLQGTILVLALFFVLLNLSVDIAQALIDPRIKRA
>Mature_317_residues
MLAYIARRIVYVVPIVLSVALVCFLLVHITPGDPLVAVLPADASQELAAQLRAAYGFDRPLPVQFGLWLWKAVHGDLGTS
IATGRPVLAEVMRAVSNTVTLAIAAAIIGFSFGLLFGLIAGYFRDTWIDKLATGIAIAGVSVPHYWLGMVLVIVFSVQLN
WLPAVGAGPGGSGQWAWDWAHLRYLILPAITTSVIPMGIVTRTVRALTGDILSQDFVEALRAKGLRETGVFGHVIKNAAP
TALAVMGLQLGYMLGGSILVETVFSWPGSGLLLNSAIFQRDLPLLQGTILVLALFFVLLNLSVDIAQALIDPRIKRA

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=316, Percent_Identity=39.2405063291139, Blast_Score=223, Evalue=1e-59,
Organism=Escherichia coli, GI1789888, Length=320, Percent_Identity=36.875, Blast_Score=209, Evalue=2e-55,
Organism=Escherichia coli, GI1789965, Length=342, Percent_Identity=34.7953216374269, Blast_Score=196, Evalue=2e-51,
Organism=Escherichia coli, GI1787761, Length=333, Percent_Identity=34.8348348348348, Blast_Score=160, Evalue=1e-40,
Organism=Escherichia coli, GI1787497, Length=320, Percent_Identity=29.6875, Blast_Score=130, Evalue=8e-32,
Organism=Escherichia coli, GI1787550, Length=332, Percent_Identity=30.7228915662651, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1788504, Length=362, Percent_Identity=24.3093922651934, Blast_Score=108, Evalue=4e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33928; Mature: 33928

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAYIARRIVYVVPIVLSVALVCFLLVHITPGDPLVAVLPADASQELAAQLRAAYGFDRP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCC
LPVQFGLWLWKAVHGDLGTSIATGRPVLAEVMRAVSNTVTLAIAAAIIGFSFGLLFGLIA
CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GYFRDTWIDKLATGIAIAGVSVPHYWLGMVLVIVFSVQLNWLPAVGAGPGGSGQWAWDWA
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCEECCCCCCCCCCCCEEHHH
HLRYLILPAITTSVIPMGIVTRTVRALTGDILSQDFVEALRAKGLRETGVFGHVIKNAAP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHHHCCCH
TALAVMGLQLGYMLGGSILVETVFSWPGSGLLLNSAIFQRDLPLLQGTILVLALFFVLLN
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
LSVDIAQALIDPRIKRA
CHHHHHHHHHCCHHCCC
>Mature Secondary Structure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CHHHHHHHHHCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9680333 [H]