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The map label for this gene is yddU [C]

Identifier: 192289253

GI number: 192289253

Start: 870381

End: 871748

Strand: Reverse

Name: yddU [C]

Synonym: Rpal_0825

Alternate gene names: 192289253

Gene position: 871748-870381 (Counterclockwise)

Preceding gene: 192289254

Following gene: 192289250

Centisome position: 15.18

GC content: 63.45

Gene sequence:

>1368_bases
ATGCCCAACCAGCCCAAGCCGCTCACGACCGCTCATCATCAGTTCGCGGCGATCGTTCAGAATTCATTCGACGCCATCGT
TTCCAAAGACGTGGAAGGAAACGTGCAGAGCTGGAACCCGGCGGCCGAGCAGATTTTCGGCTGGACCGCCGACGAGATGA
TCGGGAACTCGATCCGCGTCCTGATCCCGCCGGACCGCCAGCACGAGGAAGACGACATCCTGCAGCGGATCCGGACCGGC
GAGATGGTGCCGAAATTCGAGACCGAACGGCTGCATAAAAGCGGGCGGCGGATTCATGTCGCCGTGACGGTATCGCCGCT
TCGTGATCCTGACGGCCGCATCGTCGGTGCCTCGAAGATCGCTCACGATATCACTGAGACCGTGGAGATCCGCCGCCGGC
TGGTCGCCAGCGAACACCAGTTCCGGAGCCTCGCCAATTCGATCCCGCAGCTCGCCTGGATCGCCGAGAGCGACGGCACC
GTGTTCTGGTACAATGATCGCTGGTTCGACTACACCGGCACCACGCTCGAACAGCTGCAAGGCTCGGGTTGGACAGCGCT
GCACCACCCCGATCATCTCGAAAGGGTGCGCAGCAAGCTGCAGCACAGCTGGGACACCGGCGAGGCGTGGGAAGATACGT
TCCCGCTGCGTGGCAGAGACGGCGAGTATCGCTGGTTTTTGTCGCGCGCGATGCCGCTGCGCGACGACAGCGGCGAGGTG
TGGCGTTGGTTCGGTACCAACACCGACATCACGGTGCAGCGCCAGCATGAGCAGCAGATCCAAATGCTGATGGGTGAGAT
CAATCACCGTGCCAAGAACATGCTGGCGGTGGTGCAGGCGATGGTGATGCGCACCGCAGATCGCAGCTTCGCCGAAAGCC
TCGGCGCAAGGCTGCAGGCGCTCAGCCGCAACCAGGACCTGCTGATCAAGCGCAACTGGTCCGGAACGCCGATCGGTGAA
TTGATCGAATCGCAGCTCGCCGCGGTGAACGACCTGATCGGCACCCGCGTGCTGATCGAGGGCGAGCGCGAGTTGTTGCT
GTCGCCGGTCGCCTCCGAAACGATCGGGCTGGCGATCCACGAGCTGACCACCAATGCGACCAAGTATGGCGCGCTCTCGA
ATGCGGACGGCACCGTGCGGATCGCTTGCGAGATCCGCCATACAGTCGATGGCCGCAAGCTCGACCTGATTTGGCATGAG
CAAGGCGGCCCGCCGGTCGGCGAGCCGAACCGTGCCGGCTTCGGCACTGTGATGATCGACCGAAATCCCCGCTCGGCGCT
CGGCGCCGACGTCGAGATCAGCTACCCCGAATCCGGCCTGCGGTGGTGCCTGAATGCTCCGCTCGACCGTCTCGTTGCAA
CGCCATAA

Upstream 100 bases:

>100_bases
GAGATAGCGGGCGGGCGGCATCTGGTGTTCATTGCCCGCGGGGTCTGACCGGCGAACCCAGCCGCCGTCGGACTACGCCC
AACGGAACCCCGCGCCGCGA

Downstream 100 bases:

>100_bases
CTCGCGTCAGATATGCGCCGCGAGGTCGGCGGGGTCTTCGATCAGCACGTCGGTCTGCGCCAGCATGGTCTCGACCTGCG
CCACGGCTTCGCCGACCGAC

Product: signal transduction histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 455; Mature: 454

Protein sequence:

>455_residues
MPNQPKPLTTAHHQFAAIVQNSFDAIVSKDVEGNVQSWNPAAEQIFGWTADEMIGNSIRVLIPPDRQHEEDDILQRIRTG
EMVPKFETERLHKSGRRIHVAVTVSPLRDPDGRIVGASKIAHDITETVEIRRRLVASEHQFRSLANSIPQLAWIAESDGT
VFWYNDRWFDYTGTTLEQLQGSGWTALHHPDHLERVRSKLQHSWDTGEAWEDTFPLRGRDGEYRWFLSRAMPLRDDSGEV
WRWFGTNTDITVQRQHEQQIQMLMGEINHRAKNMLAVVQAMVMRTADRSFAESLGARLQALSRNQDLLIKRNWSGTPIGE
LIESQLAAVNDLIGTRVLIEGERELLLSPVASETIGLAIHELTTNATKYGALSNADGTVRIACEIRHTVDGRKLDLIWHE
QGGPPVGEPNRAGFGTVMIDRNPRSALGADVEISYPESGLRWCLNAPLDRLVATP

Sequences:

>Translated_455_residues
MPNQPKPLTTAHHQFAAIVQNSFDAIVSKDVEGNVQSWNPAAEQIFGWTADEMIGNSIRVLIPPDRQHEEDDILQRIRTG
EMVPKFETERLHKSGRRIHVAVTVSPLRDPDGRIVGASKIAHDITETVEIRRRLVASEHQFRSLANSIPQLAWIAESDGT
VFWYNDRWFDYTGTTLEQLQGSGWTALHHPDHLERVRSKLQHSWDTGEAWEDTFPLRGRDGEYRWFLSRAMPLRDDSGEV
WRWFGTNTDITVQRQHEQQIQMLMGEINHRAKNMLAVVQAMVMRTADRSFAESLGARLQALSRNQDLLIKRNWSGTPIGE
LIESQLAAVNDLIGTRVLIEGERELLLSPVASETIGLAIHELTTNATKYGALSNADGTVRIACEIRHTVDGRKLDLIWHE
QGGPPVGEPNRAGFGTVMIDRNPRSALGADVEISYPESGLRWCLNAPLDRLVATP
>Mature_454_residues
PNQPKPLTTAHHQFAAIVQNSFDAIVSKDVEGNVQSWNPAAEQIFGWTADEMIGNSIRVLIPPDRQHEEDDILQRIRTGE
MVPKFETERLHKSGRRIHVAVTVSPLRDPDGRIVGASKIAHDITETVEIRRRLVASEHQFRSLANSIPQLAWIAESDGTV
FWYNDRWFDYTGTTLEQLQGSGWTALHHPDHLERVRSKLQHSWDTGEAWEDTFPLRGRDGEYRWFLSRAMPLRDDSGEVW
RWFGTNTDITVQRQHEQQIQMLMGEINHRAKNMLAVVQAMVMRTADRSFAESLGARLQALSRNQDLLIKRNWSGTPIGEL
IESQLAAVNDLIGTRVLIEGERELLLSPVASETIGLAIHELTTNATKYGALSNADGTVRIACEIRHTVDGRKLDLIWHEQ
GGPPVGEPNRAGFGTVMIDRNPRSALGADVEISYPESGLRWCLNAPLDRLVATP

Specific function: Photosensitive kinase that is involved in increased bacterial virulence upon exposure to light [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767
- InterPro:   IPR013655
- InterPro:   IPR011102 [H]

Pfam domain/function: PF07536 HWE_HK; PF00989 PAS; PF08447 PAS_3 [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 51278; Mature: 51147

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: PS50112 PAS ; PS50113 PAC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNQPKPLTTAHHQFAAIVQNSFDAIVSKDVEGNVQSWNPAAEQIFGWTADEMIGNSIRV
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCHHHHCCCCEEE
LIPPDRQHEEDDILQRIRTGEMVPKFETERLHKSGRRIHVAVTVSPLRDPDGRIVGASKI
EECCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHCCCEEEEEEEEECCCCCCCCEEEHHHH
AHDITETVEIRRRLVASEHQFRSLANSIPQLAWIAESDGTVFWYNDRWFDYTGTTLEQLQ
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEECCEEEECCCCHHHHHC
GSGWTALHHPDHLERVRSKLQHSWDTGEAWEDTFPLRGRDGEYRWFLSRAMPLRDDSGEV
CCCCEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCE
WRWFGTNTDITVQRQHEQQIQMLMGEINHRAKNMLAVVQAMVMRTADRSFAESLGARLQA
EEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSRNQDLLIKRNWSGTPIGELIESQLAAVNDLIGTRVLIEGERELLLSPVASETIGLAIH
HCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCEEEEECCHHHEECCHHHHHHHHHHH
ELTTNATKYGALSNADGTVRIACEIRHTVDGRKLDLIWHEQGGPPVGEPNRAGFGTVMID
HHHCCCHHCCCCCCCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEC
RNPRSALGADVEISYPESGLRWCLNAPLDRLVATP
CCCCHHCCCCEEEECCCHHHHHHHCCCHHHHCCCC
>Mature Secondary Structure 
PNQPKPLTTAHHQFAAIVQNSFDAIVSKDVEGNVQSWNPAAEQIFGWTADEMIGNSIRV
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCHHHHCCCCEEE
LIPPDRQHEEDDILQRIRTGEMVPKFETERLHKSGRRIHVAVTVSPLRDPDGRIVGASKI
EECCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHCCCEEEEEEEEECCCCCCCCEEEHHHH
AHDITETVEIRRRLVASEHQFRSLANSIPQLAWIAESDGTVFWYNDRWFDYTGTTLEQLQ
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEECCEEEECCCCHHHHHC
GSGWTALHHPDHLERVRSKLQHSWDTGEAWEDTFPLRGRDGEYRWFLSRAMPLRDDSGEV
CCCCEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCE
WRWFGTNTDITVQRQHEQQIQMLMGEINHRAKNMLAVVQAMVMRTADRSFAESLGARLQA
EEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSRNQDLLIKRNWSGTPIGELIESQLAAVNDLIGTRVLIEGERELLLSPVASETIGLAIH
HCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCEEEEECCHHHEECCHHHHHHHHHHH
ELTTNATKYGALSNADGTVRIACEIRHTVDGRKLDLIWHEQGGPPVGEPNRAGFGTVMID
HHHCCCHHCCCCCCCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEC
RNPRSALGADVEISYPESGLRWCLNAPLDRLVATP
CCCCHHCCCCEEEECCCHHHHHHHCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA