| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
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The map label for this gene is 192289244
Identifier: 192289244
GI number: 192289244
Start: 857441
End: 859873
Strand: Reverse
Name: 192289244
Synonym: Rpal_0816
Alternate gene names: NA
Gene position: 859873-857441 (Counterclockwise)
Preceding gene: 192289245
Following gene: 192289243
Centisome position: 14.97
GC content: 61.9
Gene sequence:
>2433_bases ATGGCGTTTAGGCAATTCCTGCTGACGTCCGCCGCAATCTCCGTGGTGACCGTAATACCGTTGAGCGCGACCGCCGAGAC GGTGGCCAAGGAGGAGCCAGCGCGCTCGGTCCCCGATTTCGACGCGGCTCATGGCGGCTGGTCGTATTCGGGCGAATTCG AAGCCGGCTGGCGCTCGTTCATCCAGCGCCCACCGAAATCGGCGACGCCCTGGGTGTCGCCGACCAATCCGACCGGCGGC GGCGATCGCAACAACCGTTCGAAGTTCGAAGAGTACGGCCGGATCGCGCCAGGGTTCTATGCCGAATATCTGCGGATGAC GCTGCAGACCAAGGACGGCACCTACTGGAATGAGCTCCGCGCCGACAATATCGGCAACAACAACCAGCGCTACATCTTCG ACTTCTCGAAGGCCGGCGAGCACTACCTCACCCTGGGTTGGGATGAGATCCCACATCTCTACAACACCAGCGCGCTGAGC ATCTGGAACGGCGTCGGCACCACCACACTGACGACGCCGGTCGCCATTCCCGGCAACACCCTGTCGATCGTCGCCCCGGC GACCACCACCACGGCGGCGCAGCGCGCCGCCGTGACCAACGCGCTGGCCGGCAAGACCAATCTAATCGACGTCGGCATCG ACCGCCGCAAGGGTAGCGCAGCCTATCGCTGGACACCCGATCCGAACTGGGACGTCAAAGCGAGCTACTCGCACGAGCAG CGCGAAGGCACCCAAATCGCGGGCTTTCCGATCGGCGGTCTCGCCGGCACCGGACTGCAGCAGATGCAGGCGCCGCGACC GATCGACGACACGACCCAGATCGGCAAACTCAGCGGCCAGTACTTCGGTCCGACCCCATGGGGCGGACACTACAACGTCC AGGTCGGCGGCGGCTTCTCGCTTTACGACAACAGCTTCAATTCCTTCACGGTGCAGAATCCGTTCTTCGACCCCGCCAAT CCGCGGGTGTTCTCGCCGGCGGCGCGGATCAGTCTGATGCCGAGCAATCAGGCCTATAACACCGGCGTCACCACCGGCAT CGACCTGCCGTTCAAGACGCGCTGGAACAGCACGTTCCAGTACACCACGATGCGGCAGAACGAAGCCTTCATGCCGTTCA CCGTGAATCCCAACATCACGACCTTCCTGCTGCCGGCTTCGAGCCTCAACGGCGAGGTCAACACCGCGCTCTACAACACC ACTGCCACCACCCAGTGGACGCCGGAGTTCCGCACCACCACGCGCTATCGCTACTACGACAACGACAACCAGACGCCGGA ATTGCTGATGCCGAATTACGTGGTCGAAGATTCGTCCGCGACGGGCATCGCCGCCGGCATCCCGCGGCGGTCACTGTCGA TGTCCTACACCAAGCAGAACGCCAGCGGCGAAATGCAATGGCGCCCTGCCAAATGGGTCACATTCGGCAGCACCTTCGGT TGGGAGCAATGGGATCGCAGCCGCCGCGACGCCAACGTCACCAACGAGTTCATCGGCAAGCTGACCGCGGACTTCAAGGT CCACGACATCGCAACGCTGCGCACCAGCGGCCAGTATTCCGAACGCCGCTACGACAATTACGACGGCCTGGCGATGGCGC GAGACACCTATTACAGCGCCACGGCTAACAACGGCACCAACCTGCTGATGCGCAAGTTCGACATGGCGAATCGCAACCAG ACAAAAGCCAACGCTTTCCTCGACATTTCCGGTCCGGCCGGCAGCGTGTTCCGGGACTTCGTGATTTCACCGACCGCCGG CCTGCGATTTGAGGACTACCCGGACGATCCGCTGTTCTTCGGCCTGAAGAAGAGCAACACCTGGAACGCCGGCATCGACA TCACCTACAGCTTCACGCCAGGCTCCTCGATCCAGGCATCGTATCTGTACGAAACCTATGATCGCTTCCAGGTCGGCAGC GGTACCTTGACCAACTCCGCCACCGGCCTTCCTAACGCCACCCCGATCAACGCGTTCGGCAGCAACACGCTCGAGAAAGT GCAGACCATCCTGATCGCCAGCACGCTGGAGCTGATTCCCGGCGTGCTCGATTTCAAGCTCGGCTATGCGATCTCGTTCT CGCACGAGGATTGGGACTACGGCCCCTATAACGGTTACGCGCTGCTGGCGAATGCCGGCGGCGCCGTATACCGCCCGTTC CCGACGGTATCGACCAACTATCAGCGGCTCGATGCGTCGCTGAAGCACACGATCGATCCGTCGATCGTGGCGAAGCTGGG ATGGACCGGAGAGGTCTATGTCAAGGCGCGCTACATCTGGGAGCGCAACAGCGTCGACAATTGGCAGCAGGATCTGATGT CGCCCTACCTTTATCTGGTCGACACCACGCTGGCGCGAATGATCGACATGGGAGCCACCAATCCGAACTACGATGCGCAG TACTTCCAGGTCTCGCTCAACGCCAAATGGTGA
Upstream 100 bases:
>100_bases AGCTCGGAGCCGGGGACAGCGACGGCTGCGGCCGCCGTCGCTCGCCACACCAACAAGCCGCGAAGGGTGATGGAACGACT CGCGCGAAGGGGGCCTTGAA
Downstream 100 bases:
>100_bases GCGGCAGCGCCGTGATGTGGCGCCGCCTTCGCGACAGGATCGGCTCGCACGCGAACGCGGCGAGCTTGCAGCCGACGGCA AAGACGTGGCCGCCGGCCGA
Product: hypothetical protein
Products: NA
Alternate protein names: Outer Membrane Protein; Outer Membrane Protein MtrB
Number of amino acids: Translated: 810; Mature: 809
Protein sequence:
>810_residues MAFRQFLLTSAAISVVTVIPLSATAETVAKEEPARSVPDFDAAHGGWSYSGEFEAGWRSFIQRPPKSATPWVSPTNPTGG GDRNNRSKFEEYGRIAPGFYAEYLRMTLQTKDGTYWNELRADNIGNNNQRYIFDFSKAGEHYLTLGWDEIPHLYNTSALS IWNGVGTTTLTTPVAIPGNTLSIVAPATTTTAAQRAAVTNALAGKTNLIDVGIDRRKGSAAYRWTPDPNWDVKASYSHEQ REGTQIAGFPIGGLAGTGLQQMQAPRPIDDTTQIGKLSGQYFGPTPWGGHYNVQVGGGFSLYDNSFNSFTVQNPFFDPAN PRVFSPAARISLMPSNQAYNTGVTTGIDLPFKTRWNSTFQYTTMRQNEAFMPFTVNPNITTFLLPASSLNGEVNTALYNT TATTQWTPEFRTTTRYRYYDNDNQTPELLMPNYVVEDSSATGIAAGIPRRSLSMSYTKQNASGEMQWRPAKWVTFGSTFG WEQWDRSRRDANVTNEFIGKLTADFKVHDIATLRTSGQYSERRYDNYDGLAMARDTYYSATANNGTNLLMRKFDMANRNQ TKANAFLDISGPAGSVFRDFVISPTAGLRFEDYPDDPLFFGLKKSNTWNAGIDITYSFTPGSSIQASYLYETYDRFQVGS GTLTNSATGLPNATPINAFGSNTLEKVQTILIASTLELIPGVLDFKLGYAISFSHEDWDYGPYNGYALLANAGGAVYRPF PTVSTNYQRLDASLKHTIDPSIVAKLGWTGEVYVKARYIWERNSVDNWQQDLMSPYLYLVDTTLARMIDMGATNPNYDAQ YFQVSLNAKW
Sequences:
>Translated_810_residues MAFRQFLLTSAAISVVTVIPLSATAETVAKEEPARSVPDFDAAHGGWSYSGEFEAGWRSFIQRPPKSATPWVSPTNPTGG GDRNNRSKFEEYGRIAPGFYAEYLRMTLQTKDGTYWNELRADNIGNNNQRYIFDFSKAGEHYLTLGWDEIPHLYNTSALS IWNGVGTTTLTTPVAIPGNTLSIVAPATTTTAAQRAAVTNALAGKTNLIDVGIDRRKGSAAYRWTPDPNWDVKASYSHEQ REGTQIAGFPIGGLAGTGLQQMQAPRPIDDTTQIGKLSGQYFGPTPWGGHYNVQVGGGFSLYDNSFNSFTVQNPFFDPAN PRVFSPAARISLMPSNQAYNTGVTTGIDLPFKTRWNSTFQYTTMRQNEAFMPFTVNPNITTFLLPASSLNGEVNTALYNT TATTQWTPEFRTTTRYRYYDNDNQTPELLMPNYVVEDSSATGIAAGIPRRSLSMSYTKQNASGEMQWRPAKWVTFGSTFG WEQWDRSRRDANVTNEFIGKLTADFKVHDIATLRTSGQYSERRYDNYDGLAMARDTYYSATANNGTNLLMRKFDMANRNQ TKANAFLDISGPAGSVFRDFVISPTAGLRFEDYPDDPLFFGLKKSNTWNAGIDITYSFTPGSSIQASYLYETYDRFQVGS GTLTNSATGLPNATPINAFGSNTLEKVQTILIASTLELIPGVLDFKLGYAISFSHEDWDYGPYNGYALLANAGGAVYRPF PTVSTNYQRLDASLKHTIDPSIVAKLGWTGEVYVKARYIWERNSVDNWQQDLMSPYLYLVDTTLARMIDMGATNPNYDAQ YFQVSLNAKW >Mature_809_residues AFRQFLLTSAAISVVTVIPLSATAETVAKEEPARSVPDFDAAHGGWSYSGEFEAGWRSFIQRPPKSATPWVSPTNPTGGG DRNNRSKFEEYGRIAPGFYAEYLRMTLQTKDGTYWNELRADNIGNNNQRYIFDFSKAGEHYLTLGWDEIPHLYNTSALSI WNGVGTTTLTTPVAIPGNTLSIVAPATTTTAAQRAAVTNALAGKTNLIDVGIDRRKGSAAYRWTPDPNWDVKASYSHEQR EGTQIAGFPIGGLAGTGLQQMQAPRPIDDTTQIGKLSGQYFGPTPWGGHYNVQVGGGFSLYDNSFNSFTVQNPFFDPANP RVFSPAARISLMPSNQAYNTGVTTGIDLPFKTRWNSTFQYTTMRQNEAFMPFTVNPNITTFLLPASSLNGEVNTALYNTT ATTQWTPEFRTTTRYRYYDNDNQTPELLMPNYVVEDSSATGIAAGIPRRSLSMSYTKQNASGEMQWRPAKWVTFGSTFGW EQWDRSRRDANVTNEFIGKLTADFKVHDIATLRTSGQYSERRYDNYDGLAMARDTYYSATANNGTNLLMRKFDMANRNQT KANAFLDISGPAGSVFRDFVISPTAGLRFEDYPDDPLFFGLKKSNTWNAGIDITYSFTPGSSIQASYLYETYDRFQVGSG TLTNSATGLPNATPINAFGSNTLEKVQTILIASTLELIPGVLDFKLGYAISFSHEDWDYGPYNGYALLANAGGAVYRPFP TVSTNYQRLDASLKHTIDPSIVAKLGWTGEVYVKARYIWERNSVDNWQQDLMSPYLYLVDTTLARMIDMGATNPNYDAQY FQVSLNAKW
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 90014; Mature: 89883
Theoretical pI: Translated: 6.16; Mature: 6.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAFRQFLLTSAAISVVTVIPLSATAETVAKEEPARSVPDFDAAHGGWSYSGEFEAGWRSF CCHHHHHHHHHHEEEEEEEECCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH IQRPPKSATPWVSPTNPTGGGDRNNRSKFEEYGRIAPGFYAEYLRMTLQTKDGTYWNELR HHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHEEEEECCCCCCHHHHC ADNIGNNNQRYIFDFSKAGEHYLTLGWDEIPHLYNTSALSIWNGVGTTTLTTPVAIPGNT CCCCCCCCCEEEEEECCCCCEEEEECHHHCCCHHCCCCEEEECCCCCCEEECEEEECCCE LSIVAPATTTTAAQRAAVTNALAGKTNLIDVGIDRRKGSAAYRWTPDPNWDVKASYSHEQ EEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEECCCCCCCEEECCCCHH REGTQIAGFPIGGLAGTGLQQMQAPRPIDDTTQIGKLSGQYFGPTPWGGHYNVQVGGGFS CCCCEEECCCCCCCCCCCHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCEEEEEECCCEE LYDNSFNSFTVQNPFFDPANPRVFSPAARISLMPSNQAYNTGVTTGIDLPFKTRWNSTFQ EECCCCCEEEECCCCCCCCCCCEECCCCEEEEECCCCCCCCCCCCCCCCCEECCCCCEEE YTTMRQNEAFMPFTVNPNITTFLLPASSLNGEVNTALYNTTATTQWTPEFRTTTRYRYYD EEEEECCCCEEEEEECCCCEEEEEECCCCCCCEEEEEEECCCCCEECCCCCCCEEEEEEC NDNQTPELLMPNYVVEDSSATGIAAGIPRRSLSMSYTKQNASGEMQWRPAKWVTFGSTFG CCCCCCCEECCCEEEECCCCCCEEECCCCCCCEEEEECCCCCCCEEECCCEEEEECCCCC WEQWDRSRRDANVTNEFIGKLTADFKVHDIATLRTSGQYSERRYDNYDGLAMARDTYYSA HHHHHHHCCCCCHHHHHHHHHCCCEEEEEEEEEECCCCHHHHCCCCCCCEEEECCCEEEE TANNGTNLLMRKFDMANRNQTKANAFLDISGPAGSVFRDFVISPTAGLRFEDYPDDPLFF ECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCEEE GLKKSNTWNAGIDITYSFTPGSSIQASYLYETYDRFQVGSGTLTNSATGLPNATPINAFG EEECCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCC SNTLEKVQTILIASTLELIPGVLDFKLGYAISFSHEDWDYGPYNGYALLANAGGAVYRPF CHHHHHHHHHHHHHHHHHCCCHHEEEECEEEEECCCCCCCCCCCCEEEEEECCCCEECCC PTVSTNYQRLDASLKHTIDPSIVAKLGWTGEVYVKARYIWERNSVDNWQQDLMSPYLYLV CCCCCCHHHHCCHHHHCCCHHHHEECCCCCEEEEEEEEEEECCCCCHHHHHHHCHHHHHH DTTLARMIDMGATNPNYDAQYFQVSLNAKW HHHHHHHHHCCCCCCCCCCEEEEEEEECCC >Mature Secondary Structure AFRQFLLTSAAISVVTVIPLSATAETVAKEEPARSVPDFDAAHGGWSYSGEFEAGWRSF CHHHHHHHHHHEEEEEEEECCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH IQRPPKSATPWVSPTNPTGGGDRNNRSKFEEYGRIAPGFYAEYLRMTLQTKDGTYWNELR HHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHEEEEECCCCCCHHHHC ADNIGNNNQRYIFDFSKAGEHYLTLGWDEIPHLYNTSALSIWNGVGTTTLTTPVAIPGNT CCCCCCCCCEEEEEECCCCCEEEEECHHHCCCHHCCCCEEEECCCCCCEEECEEEECCCE LSIVAPATTTTAAQRAAVTNALAGKTNLIDVGIDRRKGSAAYRWTPDPNWDVKASYSHEQ EEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEECCCCCCCEEECCCCHH REGTQIAGFPIGGLAGTGLQQMQAPRPIDDTTQIGKLSGQYFGPTPWGGHYNVQVGGGFS CCCCEEECCCCCCCCCCCHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCEEEEEECCCEE LYDNSFNSFTVQNPFFDPANPRVFSPAARISLMPSNQAYNTGVTTGIDLPFKTRWNSTFQ EECCCCCEEEECCCCCCCCCCCEECCCCEEEEECCCCCCCCCCCCCCCCCEECCCCCEEE YTTMRQNEAFMPFTVNPNITTFLLPASSLNGEVNTALYNTTATTQWTPEFRTTTRYRYYD EEEEECCCCEEEEEECCCCEEEEEECCCCCCCEEEEEEECCCCCEECCCCCCCEEEEEEC NDNQTPELLMPNYVVEDSSATGIAAGIPRRSLSMSYTKQNASGEMQWRPAKWVTFGSTFG CCCCCCCEECCCEEEECCCCCCEEECCCCCCCEEEEECCCCCCCEEECCCEEEEECCCCC WEQWDRSRRDANVTNEFIGKLTADFKVHDIATLRTSGQYSERRYDNYDGLAMARDTYYSA HHHHHHHCCCCCHHHHHHHHHCCCEEEEEEEEEECCCCHHHHCCCCCCCEEEECCCEEEE TANNGTNLLMRKFDMANRNQTKANAFLDISGPAGSVFRDFVISPTAGLRFEDYPDDPLFF ECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCEEE GLKKSNTWNAGIDITYSFTPGSSIQASYLYETYDRFQVGSGTLTNSATGLPNATPINAFG EEECCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCC SNTLEKVQTILIASTLELIPGVLDFKLGYAISFSHEDWDYGPYNGYALLANAGGAVYRPF CHHHHHHHHHHHHHHHHHCCCHHEEEECEEEEECCCCCCCCCCCCEEEEEECCCCEECCC PTVSTNYQRLDASLKHTIDPSIVAKLGWTGEVYVKARYIWERNSVDNWQQDLMSPYLYLV CCCCCCHHHHCCHHHHCCCHHHHEECCCCCEEEEEEEEEEECCCCCHHHHHHHCHHHHHH DTTLARMIDMGATNPNYDAQYFQVSLNAKW HHHHHHHHHCCCCCCCCCCEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA