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The map label for this gene is hoxN [H]

Identifier: 192289223

GI number: 192289223

Start: 832969

End: 834027

Strand: Reverse

Name: hoxN [H]

Synonym: Rpal_0795

Alternate gene names: 192289223

Gene position: 834027-832969 (Counterclockwise)

Preceding gene: 192289224

Following gene: 192289222

Centisome position: 14.52

GC content: 64.97

Gene sequence:

>1059_bases
ATGACCGATCTCGTTCTGCCCGCTTCTTCCGATGGATTCCGCTTCCGCCTGATCGCGGTGCTCGGCGGCCTGGTGCTCGC
CAATATCGCCGCCTGGGCCTGGGCGCTGACCGCGTTCGCGGGCGAGCCGGTGCTGATTGGCACCGCGGTTCTGGCCTATA
GCCTTGGCCTGCGCCACGCGCTCGACGCCGACCATATCGCGGCGATCGACAACGTCACCCGCAAGCTGATGCAGGAGGGC
AAGCGGCCGGTCGCGGTCGGGCTGTTCTTCGCGCTCGGCCATTCCACCGTCGTGCTGGTGGCTTCGCTGGCGATCGCAGT
CGCGGCCAATTCGCTGACCGAACGGTTCTCGGGCTATCGCGAGATCGGCGGGGTGATCGGCACCTCGGCGTCGGCGCTGT
TTCTGTTCGCGATCGCCATCGCCAATCTGTCGGTGCTGAGCGGCGTGTACCGGGCGTTCAAGAAGGTCAAGGCCGGCGAG
GTCGTGCACGACGACGACATCAACGAACTGCTGCAGCAGCGCGGCTGGCTGGCGCGGCTGTTCCGGCCGCTGTTCCGTTT
CGTCTCCAAGAGCTGGCAGCTGTTTCCGATCGGGCTATTGTTCGCGCTCGGCTTCGAGACCGCCAGCGAAATCAGCCTGT
TCGGACTGGCCGCCAACGCCTCCGGCAGCATTTCGCACTGGACGATCCTGGTGTTCCCGGCGCTGTTTGCCGCCGGTATG
ACCCTGGTCGACACCCTCGACGGCGTGCTGATGCTCGGCGCCTATGGCTGGGCGTATCGCAATCCGATCCGCAAGCTGTA
CTACAACATGACGATCACGACGGTGTCGGTGCTGGTGGCGCTGCTGATCGGCGGCATCGAGACGCTCGGACTGCTCGCCG
GGCGCTTCCACCTCGAAGGCGCGTTCTGGGAGTGGATCGAAGAACTCAATTCCAATTTCGGCGCGCTCGGTTACGGCATC
GTGGCGCTGTTCGTGGCGAGCTGGATCGTCTCCACCATCATCTATCGCCTCAACGGCTATCACCGGCTCGACCAGGCAGC
CGCGGCCGTGCAGAAATGA

Upstream 100 bases:

>100_bases
GAGACCGGCCTGAGTACGTCATCTTCCACCGTGCGGCGCGCGCGGCTGGAGCGGTCCGCCGCACAGGTGACAGGATGCTG
CTCACCGGCCGGAGACCGCC

Downstream 100 bases:

>100_bases
GCGCGGTATGACCCGACGTTCCGGACCGAATTCGCGCGCGGCGGCCGTGACCGCTGTGCTTGCGGTGCTCGTAACCCTGC
TGGCGATCGGATCGCTCGCG

Product: high-affinity nickel-transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 352; Mature: 351

Protein sequence:

>352_residues
MTDLVLPASSDGFRFRLIAVLGGLVLANIAAWAWALTAFAGEPVLIGTAVLAYSLGLRHALDADHIAAIDNVTRKLMQEG
KRPVAVGLFFALGHSTVVLVASLAIAVAANSLTERFSGYREIGGVIGTSASALFLFAIAIANLSVLSGVYRAFKKVKAGE
VVHDDDINELLQQRGWLARLFRPLFRFVSKSWQLFPIGLLFALGFETASEISLFGLAANASGSISHWTILVFPALFAAGM
TLVDTLDGVLMLGAYGWAYRNPIRKLYYNMTITTVSVLVALLIGGIETLGLLAGRFHLEGAFWEWIEELNSNFGALGYGI
VALFVASWIVSTIIYRLNGYHRLDQAAAAVQK

Sequences:

>Translated_352_residues
MTDLVLPASSDGFRFRLIAVLGGLVLANIAAWAWALTAFAGEPVLIGTAVLAYSLGLRHALDADHIAAIDNVTRKLMQEG
KRPVAVGLFFALGHSTVVLVASLAIAVAANSLTERFSGYREIGGVIGTSASALFLFAIAIANLSVLSGVYRAFKKVKAGE
VVHDDDINELLQQRGWLARLFRPLFRFVSKSWQLFPIGLLFALGFETASEISLFGLAANASGSISHWTILVFPALFAAGM
TLVDTLDGVLMLGAYGWAYRNPIRKLYYNMTITTVSVLVALLIGGIETLGLLAGRFHLEGAFWEWIEELNSNFGALGYGI
VALFVASWIVSTIIYRLNGYHRLDQAAAAVQK
>Mature_351_residues
TDLVLPASSDGFRFRLIAVLGGLVLANIAAWAWALTAFAGEPVLIGTAVLAYSLGLRHALDADHIAAIDNVTRKLMQEGK
RPVAVGLFFALGHSTVVLVASLAIAVAANSLTERFSGYREIGGVIGTSASALFLFAIAIANLSVLSGVYRAFKKVKAGEV
VHDDDINELLQQRGWLARLFRPLFRFVSKSWQLFPIGLLFALGFETASEISLFGLAANASGSISHWTILVFPALFAAGMT
LVDTLDGVLMLGAYGWAYRNPIRKLYYNMTITTVSVLVALLIGGIETLGLLAGRFHLEGAFWEWIEELNSNFGALGYGIV
ALFVASWIVSTIIYRLNGYHRLDQAAAAVQK

Specific function: High-affinity nickel transporter responsible for nickel uptake. Necessary for high levels of activity of hydrogenase and urease [H]

COG id: COG3376

COG function: function code P; High-affinity nickel permease

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NiCoT transporter (TC 2.A.52) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004688
- InterPro:   IPR011541 [H]

Pfam domain/function: PF03824 NicO [H]

EC number: NA

Molecular weight: Translated: 37954; Mature: 37823

Theoretical pI: Translated: 8.73; Mature: 8.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDLVLPASSDGFRFRLIAVLGGLVLANIAAWAWALTAFAGEPVLIGTAVLAYSLGLRHA
CCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
LDADHIAAIDNVTRKLMQEGKRPVAVGLFFALGHSTVVLVASLAIAVAANSLTERFSGYR
CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EIGGVIGTSASALFLFAIAIANLSVLSGVYRAFKKVKAGEVVHDDDINELLQQRGWLARL
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHH
FRPLFRFVSKSWQLFPIGLLFALGFETASEISLFGLAANASGSISHWTILVFPALFAAGM
HHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHEEEEEECCCCCCHHHHHHHHHHHHHCCH
TLVDTLDGVLMLGAYGWAYRNPIRKLYYNMTITTVSVLVALLIGGIETLGLLAGRFHLEG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
AFWEWIEELNSNFGALGYGIVALFVASWIVSTIIYRLNGYHRLDQAAAAVQK
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC
>Mature Secondary Structure 
TDLVLPASSDGFRFRLIAVLGGLVLANIAAWAWALTAFAGEPVLIGTAVLAYSLGLRHA
CCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
LDADHIAAIDNVTRKLMQEGKRPVAVGLFFALGHSTVVLVASLAIAVAANSLTERFSGYR
CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EIGGVIGTSASALFLFAIAIANLSVLSGVYRAFKKVKAGEVVHDDDINELLQQRGWLARL
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHH
FRPLFRFVSKSWQLFPIGLLFALGFETASEISLFGLAANASGSISHWTILVFPALFAAGM
HHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHEEEEEECCCCCCHHHHHHHHHHHHHCCH
TLVDTLDGVLMLGAYGWAYRNPIRKLYYNMTITTVSVLVALLIGGIETLGLLAGRFHLEG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
AFWEWIEELNSNFGALGYGIVALFVASWIVSTIIYRLNGYHRLDQAAAAVQK
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1847142; 7896709; 12948488; 7934894 [H]