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The map label for this gene is 192288878

Identifier: 192288878

GI number: 192288878

Start: 482348

End: 482767

Strand: Reverse

Name: 192288878

Synonym: Rpal_0447

Alternate gene names: NA

Gene position: 482767-482348 (Counterclockwise)

Preceding gene: 192288879

Following gene: 192288877

Centisome position: 8.4

GC content: 60.24

Gene sequence:

>420_bases
ATGTCGACTAAAGCGCCCAATCCTGTTGACAAATACGTCGGCAGCCGTGTGCGCATGCGACGCATCATGCTGGGCATGAG
TCAGGAGAAACTCGGCGAAGCGCTGGGTCTGACTTTTCAGCAAGTGCAGAAATACGAGAAGGGGACCAACCGCGTCGGCG
CCAGCCGCATTCAGCAGATTGCTGAAGTCCTGCAGGTCCCGGTGTCCTTCTTGTTCGAAGGCGGCCCGAGCGGCGGCCTC
GCTAACGGCAACGGCTTCAGTGAGGCGCCGTCGCCTTCATACGTGTCCGACTTCCTCGCGACTTCCGAAGGTCTGGCGCT
CACCCGCGCCTTTACCAAGATCACTGATGCCAAGCTTCGTCGCAGCATCGTCGATCTCGTCGAACGGATTGCCGCGCGCG
AAGCGGACGAGACGAACTGA

Upstream 100 bases:

>100_bases
GTTGGATTCCAAAGACATTTGACGACTCCAATATTTGAGGCGTATTCCAACCCGCATACGCTAACTGTTGGCGTATGCAC
GTGCCTGAGGAGTGAGTGAG

Downstream 100 bases:

>100_bases
TCGATCGACCTCCCGTCGCGCCGGCCTCCGCCATGATATAAGCGGGGCCGGTTTTTCGTTCACGGTCGAACAAGATGGCG
GTCCTGTATGCAGGGCGGCC

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 138

Protein sequence:

>139_residues
MSTKAPNPVDKYVGSRVRMRRIMLGMSQEKLGEALGLTFQQVQKYEKGTNRVGASRIQQIAEVLQVPVSFLFEGGPSGGL
ANGNGFSEAPSPSYVSDFLATSEGLALTRAFTKITDAKLRRSIVDLVERIAAREADETN

Sequences:

>Translated_139_residues
MSTKAPNPVDKYVGSRVRMRRIMLGMSQEKLGEALGLTFQQVQKYEKGTNRVGASRIQQIAEVLQVPVSFLFEGGPSGGL
ANGNGFSEAPSPSYVSDFLATSEGLALTRAFTKITDAKLRRSIVDLVERIAAREADETN
>Mature_138_residues
STKAPNPVDKYVGSRVRMRRIMLGMSQEKLGEALGLTFQQVQKYEKGTNRVGASRIQQIAEVLQVPVSFLFEGGPSGGLA
NGNGFSEAPSPSYVSDFLATSEGLALTRAFTKITDAKLRRSIVDLVERIAAREADETN

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 15094; Mature: 14963

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTKAPNPVDKYVGSRVRMRRIMLGMSQEKLGEALGLTFQQVQKYEKGTNRVGASRIQQI
CCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
AEVLQVPVSFLFEGGPSGGLANGNGFSEAPSPSYVSDFLATSEGLALTRAFTKITDAKLR
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
RSIVDLVERIAAREADETN
HHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
STKAPNPVDKYVGSRVRMRRIMLGMSQEKLGEALGLTFQQVQKYEKGTNRVGASRIQQI
CCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
AEVLQVPVSFLFEGGPSGGLANGNGFSEAPSPSYVSDFLATSEGLALTRAFTKITDAKLR
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
RSIVDLVERIAAREADETN
HHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8868435 [H]