| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
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The map label for this gene is 192288849
Identifier: 192288849
GI number: 192288849
Start: 450309
End: 450635
Strand: Reverse
Name: 192288849
Synonym: Rpal_0418
Alternate gene names: NA
Gene position: 450635-450309 (Counterclockwise)
Preceding gene: 192288850
Following gene: 192288848
Centisome position: 7.85
GC content: 69.72
Gene sequence:
>327_bases ATGGCGGAAGCTTGGCGGTATTCGGCTCAGGGCGTTGCGGTGGCGGTGCGGGTCACCCCGCGCGGCGGCCGCGATGACAT CGACGGGCTGGAGACGCTGTCCGACGGTCGGCCGGTGGTCAAAGTGCGGGTCCGGGCAATCGCCGACGGCGGCGAGGCCA ACCGCGCGGTGACCGAGCTGCTGGCGAAAGCGGTCGGGGTGCCGAAACGCAATGTCAGGCTGCTGTCCGGCGCGACATCG CGGCAAAAACAGATCGCGATCGACGGCGATCCAAAACAGCTCGGCGAGGCGTTGCGCCGCCTGGTGGCGGCCAAGCCCGC CGAATGA
Upstream 100 bases:
>100_bases CCGATCATCCTGATCCTTCTGATCATGTTCCTGCAGCGGGTGATCACCTATTACATCTACCCGGCGGTGTTCTAACCGCG CCGGAAAGGCGAGCGCCGGC
Downstream 100 bases:
>100_bases ACAACCCGGGAGGCCCGCGAGGGCGATCCACCGTTCGCCTCTCCGTCCGGGGAGGCGTTGTCATTTCGATGCGGACGCAT CGGCTGGACCAGTCAAAGAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 108; Mature: 107
Protein sequence:
>108_residues MAEAWRYSAQGVAVAVRVTPRGGRDDIDGLETLSDGRPVVKVRVRAIADGGEANRAVTELLAKAVGVPKRNVRLLSGATS RQKQIAIDGDPKQLGEALRRLVAAKPAE
Sequences:
>Translated_108_residues MAEAWRYSAQGVAVAVRVTPRGGRDDIDGLETLSDGRPVVKVRVRAIADGGEANRAVTELLAKAVGVPKRNVRLLSGATS RQKQIAIDGDPKQLGEALRRLVAAKPAE >Mature_107_residues AEAWRYSAQGVAVAVRVTPRGGRDDIDGLETLSDGRPVVKVRVRAIADGGEANRAVTELLAKAVGVPKRNVRLLSGATSR QKQIAIDGDPKQLGEALRRLVAAKPAE
Specific function: Unknown
COG id: COG1872
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0235 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003746 [H]
Pfam domain/function: PF02594 DUF167 [H]
EC number: NA
Molecular weight: Translated: 11453; Mature: 11322
Theoretical pI: Translated: 11.01; Mature: 11.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEAWRYSAQGVAVAVRVTPRGGRDDIDGLETLSDGRPVVKVRVRAIADGGEANRAVTEL CCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHCCCCCEEEEEEEEECCCCCCHHHHHHH LAKAVGVPKRNVRLLSGATSRQKQIAIDGDPKQLGEALRRLVAAKPAE HHHHHCCCCCCEEEECCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCC >Mature Secondary Structure AEAWRYSAQGVAVAVRVTPRGGRDDIDGLETLSDGRPVVKVRVRAIADGGEANRAVTEL CCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHCCCCCEEEEEEEEECCCCCCHHHHHHH LAKAVGVPKRNVRLLSGATSRQKQIAIDGDPKQLGEALRRLVAAKPAE HHHHHCCCCCCEEEECCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA