| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
Click here to switch to the map view.
The map label for this gene is chaB [C]
Identifier: 192288810
GI number: 192288810
Start: 403362
End: 403583
Strand: Reverse
Name: chaB [C]
Synonym: Rpal_0379
Alternate gene names: 192288810
Gene position: 403583-403362 (Counterclockwise)
Preceding gene: 192288813
Following gene: 192288809
Centisome position: 7.03
GC content: 64.41
Gene sequence:
>222_bases GTGCCTTATGCTTCCACCGACGATCTTGCGCCGGGACTGCAAGTCCGGCTGCCGCTGCACGCTCAGGAGATCTACATCGC GGCCTTCAACAACGCCTTCGCCGAGTACCAGGATCGCGGCCCGGAGGAGCAGGAGGCTACCGCGCATCGCGTCGCATGGG CTGCGGTGAAGAAGCTTTACCGCAAGCAGGGCGAAAACTGGGTGGCGCGCGAACGGAGCTGA
Upstream 100 bases:
>100_bases TCGGATGCGAGCGTCGCGACAGGTAGCGACGCACAGCCCAGGATCGGGCGATCACCGGAGCCAGTTCCTCGGCGGCGCGG CGCGACAAGGGAGGGCCCGC
Downstream 100 bases:
>100_bases TCGGGTCGGCTTTGATCGATAACGCCACGCGCGCTATATCCATCGTATCCGATCTCCGACCCAGGAGCCCGCGATGGATG CGATGGTGCTGACAGCACCG
Product: ChaB family protein
Products: NA
Alternate protein names: Cation Transport Regulator; Cation Transport Regulato ChaB
Number of amino acids: Translated: 73; Mature: 72
Protein sequence:
>73_residues MPYASTDDLAPGLQVRLPLHAQEIYIAAFNNAFAEYQDRGPEEQEATAHRVAWAAVKKLYRKQGENWVARERS
Sequences:
>Translated_73_residues MPYASTDDLAPGLQVRLPLHAQEIYIAAFNNAFAEYQDRGPEEQEATAHRVAWAAVKKLYRKQGENWVARERS >Mature_72_residues PYASTDDLAPGLQVRLPLHAQEIYIAAFNNAFAEYQDRGPEEQEATAHRVAWAAVKKLYRKQGENWVARERS
Specific function: Unknown
COG id: COG4572
COG function: function code R; Putative cation transport regulator
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1787469, Length=70, Percent_Identity=45.7142857142857, Blast_Score=62, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 8345; Mature: 8214
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPYASTDDLAPGLQVRLPLHAQEIYIAAFNNAFAEYQDRGPEEQEATAHRVAWAAVKKLY CCCCCCCCCCCCCEEEECCCCCEEEEEHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHH RKQGENWVARERS HHCCCCCCCCCCC >Mature Secondary Structure PYASTDDLAPGLQVRLPLHAQEIYIAAFNNAFAEYQDRGPEEQEATAHRVAWAAVKKLY CCCCCCCCCCCCEEEECCCCCEEEEEHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHH RKQGENWVARERS HHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA