| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
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The map label for this gene is 192288766
Identifier: 192288766
GI number: 192288766
Start: 353249
End: 354190
Strand: Reverse
Name: 192288766
Synonym: Rpal_0335
Alternate gene names: NA
Gene position: 354190-353249 (Counterclockwise)
Preceding gene: 192288774
Following gene: 192288763
Centisome position: 6.17
GC content: 65.61
Gene sequence:
>942_bases ATGAGACAGATAGCGCGCTTGTTTGCGATTGCCCTGCTGTCGGCCGCCGCGACCAACGCGGTCGCCGCCGATGCGGTTTA CCCACGCGGCATTCGGGTCGGCATCGTGCCGATGCCGGGGCTGAACCAGTCCACCGCCTTCCTGGGCTTTGAGTCCGGCG ACCAGGGCGTCAAAGTGCTGGTGTCCGAGCTGCCGGGGCCCGCGTTCGATCAGATCGACGCGGCGTTCAAGGCAGCTCCC GAAGGTTCGCTCGGCAACGTCAAGCCGGAGAAGATCGAGACCGCTGCCGGCAACGGCTATTTCACCGCCGAAGACGCTGT GGTGGGTCCCGACAAGGTCCGCCGCTACTCGCTGATCGTGCCCGGCAGCAAGCTGTTTTCGGGCTACGTCGCCGTGCAGG TGCCGGCGACCGAGGCAAAGACCTACTCGGACGAAGCAATCAAGAAGATGCTGTCGTCGGTGTCGGTGCGGCAGCAGGTG CCGGTCGACGAGCAGGTCGCGCAGATGCCGTTCAAGATCCGCGAGCTCGGCGACTTCAAGACGGTGCGGACGCTGGCGCC CGGCGCCGCGCTATTGCTGACCGATGGCAACGAAGAGGCGGTCGAGACCGGCCCGTTCATGGTGCTGGGGCTGATCGGCT CGGTGCCGGAGAAAACCGACGATCGCGCCCGCTTCGCCCAGCAGGCGGCCGAAGCAATTCCCGGCGTGCGCGAGAGCAAG ATCACGATGTCGGAGCCGATGCGGATCGACGGTGCGCCGGGATTCGAGACCCGGGTCACGGGTGTCAGTGGCAAGAACAA TACACCGGTGACGGTGGTGCAGTGGCTGCGCTTCGGCAGCGCCAATGTGGCGATGCGGGTGATCGGCTCGTCACCGAAAG ACCAATGGGAAACGGCGTTTCCGCGCTTCCGCAAAGTCCGCGACGGTTTGCAGCCACGCTGA
Upstream 100 bases:
>100_bases GCAGCGCATCATCGCGGTCGCCGGCCGTCCGATTTGCAGCACCAAACCCGGTCGAACCCGACCAAACAACGGCCTCAATG CAGCCCCAGGACAACTCGCC
Downstream 100 bases:
>100_bases CCAAACGCAAACGACGCGCGAGCGGCGCGTCGTTTTTCTCTCTCAAAACACTTGCTGAGATTGATCGGCGACGCGGCTCC GGCTCGCGCCGAAGCCGCAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 313; Mature: 313
Protein sequence:
>313_residues MRQIARLFAIALLSAAATNAVAADAVYPRGIRVGIVPMPGLNQSTAFLGFESGDQGVKVLVSELPGPAFDQIDAAFKAAP EGSLGNVKPEKIETAAGNGYFTAEDAVVGPDKVRRYSLIVPGSKLFSGYVAVQVPATEAKTYSDEAIKKMLSSVSVRQQV PVDEQVAQMPFKIRELGDFKTVRTLAPGAALLLTDGNEEAVETGPFMVLGLIGSVPEKTDDRARFAQQAAEAIPGVRESK ITMSEPMRIDGAPGFETRVTGVSGKNNTPVTVVQWLRFGSANVAMRVIGSSPKDQWETAFPRFRKVRDGLQPR
Sequences:
>Translated_313_residues MRQIARLFAIALLSAAATNAVAADAVYPRGIRVGIVPMPGLNQSTAFLGFESGDQGVKVLVSELPGPAFDQIDAAFKAAP EGSLGNVKPEKIETAAGNGYFTAEDAVVGPDKVRRYSLIVPGSKLFSGYVAVQVPATEAKTYSDEAIKKMLSSVSVRQQV PVDEQVAQMPFKIRELGDFKTVRTLAPGAALLLTDGNEEAVETGPFMVLGLIGSVPEKTDDRARFAQQAAEAIPGVRESK ITMSEPMRIDGAPGFETRVTGVSGKNNTPVTVVQWLRFGSANVAMRVIGSSPKDQWETAFPRFRKVRDGLQPR >Mature_313_residues MRQIARLFAIALLSAAATNAVAADAVYPRGIRVGIVPMPGLNQSTAFLGFESGDQGVKVLVSELPGPAFDQIDAAFKAAP EGSLGNVKPEKIETAAGNGYFTAEDAVVGPDKVRRYSLIVPGSKLFSGYVAVQVPATEAKTYSDEAIKKMLSSVSVRQQV PVDEQVAQMPFKIRELGDFKTVRTLAPGAALLLTDGNEEAVETGPFMVLGLIGSVPEKTDDRARFAQQAAEAIPGVRESK ITMSEPMRIDGAPGFETRVTGVSGKNNTPVTVVQWLRFGSANVAMRVIGSSPKDQWETAFPRFRKVRDGLQPR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33452; Mature: 33452
Theoretical pI: Translated: 9.29; Mature: 9.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRQIARLFAIALLSAAATNAVAADAVYPRGIRVGIVPMPGLNQSTAFLGFESGDQGVKVL CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCEEEEEECCCCHHHHHH VSELPGPAFDQIDAAFKAAPEGSLGNVKPEKIETAAGNGYFTAEDAVVGPDKVRRYSLIV HHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCEEECCCCEECHHHHCEEEEEE PGSKLFSGYVAVQVPATEAKTYSDEAIKKMLSSVSVRQQVPVDEQVAQMPFKIRELGDFK CCHHHHCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHCCHH TVRTLAPGAALLLTDGNEEAVETGPFMVLGLIGSVPEKTDDRARFAQQAAEAIPGVRESK HHHHHCCCCEEEEECCCCHHHHCCCEEEEEHHCCCCCCCCHHHHHHHHHHHHCCCCCCCC ITMSEPMRIDGAPGFETRVTGVSGKNNTPVTVVQWLRFGSANVAMRVIGSSPKDQWETAF EECCCCEEECCCCCCCEEEEECCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCHHHHHHH PRFRKVRDGLQPR HHHHHHHCCCCCC >Mature Secondary Structure MRQIARLFAIALLSAAATNAVAADAVYPRGIRVGIVPMPGLNQSTAFLGFESGDQGVKVL CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCEEEEEECCCCHHHHHH VSELPGPAFDQIDAAFKAAPEGSLGNVKPEKIETAAGNGYFTAEDAVVGPDKVRRYSLIV HHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCEEECCCCEECHHHHCEEEEEE PGSKLFSGYVAVQVPATEAKTYSDEAIKKMLSSVSVRQQVPVDEQVAQMPFKIRELGDFK CCHHHHCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHCCHH TVRTLAPGAALLLTDGNEEAVETGPFMVLGLIGSVPEKTDDRARFAQQAAEAIPGVRESK HHHHHCCCCEEEEECCCCHHHHCCCEEEEEHHCCCCCCCCHHHHHHHHHHHHCCCCCCCC ITMSEPMRIDGAPGFETRVTGVSGKNNTPVTVVQWLRFGSANVAMRVIGSSPKDQWETAF EECCCCEEECCCCCCCEEEEECCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCHHHHHHH PRFRKVRDGLQPR HHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA