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The map label for this gene is tsr [C]

Identifier: 192288664

GI number: 192288664

Start: 251718

End: 253409

Strand: Reverse

Name: tsr [C]

Synonym: Rpal_0233

Alternate gene names: 192288664

Gene position: 253409-251718 (Counterclockwise)

Preceding gene: 192288665

Following gene: 192288662

Centisome position: 4.41

GC content: 66.78

Gene sequence:

>1692_bases
ATGAAAATTCGCCTTTCGATCACGTCGATGATCGTCGCTTTCGCCGTGGTTGTTTTGGTGAGCCTCACGGCGATGCTGAC
CACCAACATCATGGCGCTCAATCAATTGCGGGTCGGCGGGCCGCTGTATTCGCAGATCAAGCTCGGCAACGATCTGGTCG
CCGACATCCTGCCGCCGCCGGCCTATGTGATCGAAGCCTACCTCGAAGCGACGCTGGCGCTGCGCCGGCCCACCGAGTGG
CGCGCCCATGCCGCCAAGCTCGAGCAGCTTCACCGCGACTATCTCGATCGGCAGAAATACTGGTCAGGCTCAGAGCTCGA
TCCGGTCCTGAAGACGCGCCTGACCGTCGACTCCGACGCGGCCGTGCAGAAGTTCTGGAGAGCGGCGGAGCAGGAGCTGA
TCCCGGCCTTGAGTGCTGGTGACGAGGCGGCGGCGGAGGCCGCCTACACGAAGCTCGATGCAAGCTATGCGGCACATCGC
GCCATTATCGACGACATCGTCAAGCGCGCCAACGCCGAGAACGCCGAGCTTGAAACCGAAGCCGCTCGTCAGGTCGGCAG
CTACTCGACGATCGTGTGGATTCTGTCGGGCTTTGCGGCGCTGCTGATCGCGCTCGGCGTCGCCGGCCTCGCGGTCGGAA
TGGTCCGTCCGTTGGTGCGGCTCACCGCGGCCATGCAGGCGATGGCCGCCGGCATGCTCGACGTGGTGATCCCGGGTGCA
GGCCGCAGCGACGAGATCGGCGGCATGGCCAAAGCGATCACCGCGATCAAGACCAACGCCGAGCACAAGGCGAACCAGGA
AGCCGCCGAGAAGAGCCGGCAGGAGCACCTGGCCGCCGAGCAGCGCAAGGCCGATATGGCGCGGCTCGCCGATGGCTTTG
AAGACGCGGTCGGAGAGATCATCAAGACCGTGTCGTCCGCCGCCAACGAATTGGAAGCCGCCGCGCACTCGCTGTCCTCG
ACCGCGGCGCGCTCGCTCGAGCTTGCGGTCGGCGTCGCCTCGTCGTCCCAGGAGGCCTCCGCCGGCGTGCAGTCGGTGGC
GTCCGCCAGCGAGGAACTGACCGCGTCGGTGCATGAGATCGGCCGGCAGGTGCAGACCTCTGCGAACGTGGCGAATGAGG
CCGCCGATCAGGCGCGCCAGACCAATGAACGGGTCAGCGAATTGTCGGCCGCTGCCGCCCGGATCGGGGATGTCGTCGAA
TTGATCAGCAACATTGCCGGGCAGACCAATCTGCTCGCGCTGAACGCGACGATCGAAGCCGCCCGGGCCGGCGAAGCAGG
CCGGGGCTTCGCCGTGGTGGCGTCGGAGGTCAAGGCGCTGGCCGAGCAGACCGGCAAGGCCACCGGCGAGATCGGTCAGC
AGATCACCGGCATTCAGGCGGCGACCGGCGAGTCGGTGGCGGCCATCAAGGAGATCTGCTCGATCATCGGCCAGATGTCG
GAGATCTCTTCCTCGATCGCCTCCGCGGTCGAAGAGCAGGGCATGGCCACCAAGGATATCGCCGTCAACATCCAGCACGC
CGCCCACGGCACCTCGCAGGTCGACGAGGACATCGCCCGCGTCCAGGCCGGCGCCCGCGAGACCGGCGCAGCCTCGGTGC
AGGTACTGTCCGCCGCTAAATCGCTGTCGAGCGAGAGCAGCCGCCTGCGCGCCGAGGTCGGCAATTTCCTGGCGTCGGTG
CGCGCGGCCTGA

Upstream 100 bases:

>100_bases
TATGATTACGATCTTTAGGGGCGGATTTTCTTGCGACGTAACGTCGTCTTAAGCGGCTGGAACTAATCAGGTCGAAACCG
ATCCACCCGAGACTAACGTC

Downstream 100 bases:

>100_bases
CGAGGACGCGCTTCTGGTAGCCATAGGCTCCGTCATTCCGGGGCGCCGCGCAGCGGCGAACCCGGAATCACGTCGTTCAA
AGCATCAGCGGTCGCACGAC

Product: methyl-accepting chemotaxis sensory transducer

Products: NA

Alternate protein names: Methyl-accepting chemotaxis protein [H]

Number of amino acids: Translated: 563; Mature: 563

Protein sequence:

>563_residues
MKIRLSITSMIVAFAVVVLVSLTAMLTTNIMALNQLRVGGPLYSQIKLGNDLVADILPPPAYVIEAYLEATLALRRPTEW
RAHAAKLEQLHRDYLDRQKYWSGSELDPVLKTRLTVDSDAAVQKFWRAAEQELIPALSAGDEAAAEAAYTKLDASYAAHR
AIIDDIVKRANAENAELETEAARQVGSYSTIVWILSGFAALLIALGVAGLAVGMVRPLVRLTAAMQAMAAGMLDVVIPGA
GRSDEIGGMAKAITAIKTNAEHKANQEAAEKSRQEHLAAEQRKADMARLADGFEDAVGEIIKTVSSAANELEAAAHSLSS
TAARSLELAVGVASSSQEASAGVQSVASASEELTASVHEIGRQVQTSANVANEAADQARQTNERVSELSAAAARIGDVVE
LISNIAGQTNLLALNATIEAARAGEAGRGFAVVASEVKALAEQTGKATGEIGQQITGIQAATGESVAAIKEICSIIGQMS
EISSSIASAVEEQGMATKDIAVNIQHAAHGTSQVDEDIARVQAGARETGAASVQVLSAAKSLSSESSRLRAEVGNFLASV
RAA

Sequences:

>Translated_563_residues
MKIRLSITSMIVAFAVVVLVSLTAMLTTNIMALNQLRVGGPLYSQIKLGNDLVADILPPPAYVIEAYLEATLALRRPTEW
RAHAAKLEQLHRDYLDRQKYWSGSELDPVLKTRLTVDSDAAVQKFWRAAEQELIPALSAGDEAAAEAAYTKLDASYAAHR
AIIDDIVKRANAENAELETEAARQVGSYSTIVWILSGFAALLIALGVAGLAVGMVRPLVRLTAAMQAMAAGMLDVVIPGA
GRSDEIGGMAKAITAIKTNAEHKANQEAAEKSRQEHLAAEQRKADMARLADGFEDAVGEIIKTVSSAANELEAAAHSLSS
TAARSLELAVGVASSSQEASAGVQSVASASEELTASVHEIGRQVQTSANVANEAADQARQTNERVSELSAAAARIGDVVE
LISNIAGQTNLLALNATIEAARAGEAGRGFAVVASEVKALAEQTGKATGEIGQQITGIQAATGESVAAIKEICSIIGQMS
EISSSIASAVEEQGMATKDIAVNIQHAAHGTSQVDEDIARVQAGARETGAASVQVLSAAKSLSSESSRLRAEVGNFLASV
RAA
>Mature_563_residues
MKIRLSITSMIVAFAVVVLVSLTAMLTTNIMALNQLRVGGPLYSQIKLGNDLVADILPPPAYVIEAYLEATLALRRPTEW
RAHAAKLEQLHRDYLDRQKYWSGSELDPVLKTRLTVDSDAAVQKFWRAAEQELIPALSAGDEAAAEAAYTKLDASYAAHR
AIIDDIVKRANAENAELETEAARQVGSYSTIVWILSGFAALLIALGVAGLAVGMVRPLVRLTAAMQAMAAGMLDVVIPGA
GRSDEIGGMAKAITAIKTNAEHKANQEAAEKSRQEHLAAEQRKADMARLADGFEDAVGEIIKTVSSAANELEAAAHSLSS
TAARSLELAVGVASSSQEASAGVQSVASASEELTASVHEIGRQVQTSANVANEAADQARQTNERVSELSAAAARIGDVVE
LISNIAGQTNLLALNATIEAARAGEAGRGFAVVASEVKALAEQTGKATGEIGQQITGIQAATGESVAAIKEICSIIGQMS
EISSSIASAVEEQGMATKDIAVNIQHAAHGTSQVDEDIARVQAGARETGAASVQVLSAAKSLSSESSRLRAEVGNFLASV
RAA

Specific function: Chemotactic-signal transducers respond to changes in the concentration of attractants and repellents in the environment, transduce a signal from the outside to the inside of the cell, and facilitate sensory adaptation through the variation of the level of

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

Organism=Escherichia coli, GI2367378, Length=331, Percent_Identity=29.9093655589124, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI1788194, Length=244, Percent_Identity=32.3770491803279, Blast_Score=93, Evalue=4e-20,
Organism=Escherichia coli, GI1787690, Length=285, Percent_Identity=28.7719298245614, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI1788195, Length=207, Percent_Identity=32.3671497584541, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI1789453, Length=212, Percent_Identity=30.6603773584906, Blast_Score=80, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004089
- InterPro:   IPR003660 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal [H]

EC number: NA

Molecular weight: Translated: 58721; Mature: 58721

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2 ; PS50192 T_SNARE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIRLSITSMIVAFAVVVLVSLTAMLTTNIMALNQLRVGGPLYSQIKLGNDLVADILPPP
CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHCCCH
AYVIEAYLEATLALRRPTEWRAHAAKLEQLHRDYLDRQKYWSGSELDPVLKTRLTVDSDA
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCHH
AVQKFWRAAEQELIPALSAGDEAAAEAAYTKLDASYAAHRAIIDDIVKRANAENAELETE
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
AARQVGSYSTIVWILSGFAALLIALGVAGLAVGMVRPLVRLTAAMQAMAAGMLDVVIPGA
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHEEECCC
GRSDEIGGMAKAITAIKTNAEHKANQEAAEKSRQEHLAAEQRKADMARLADGFEDAVGEI
CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
IKTVSSAANELEAAAHSLSSTAARSLELAVGVASSSQEASAGVQSVASASEELTASVHEI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
GRQVQTSANVANEAADQARQTNERVSELSAAAARIGDVVELISNIAGQTNLLALNATIEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHH
ARAGEAGRGFAVVASEVKALAEQTGKATGEIGQQITGIQAATGESVAAIKEICSIIGQMS
HHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHH
EISSSIASAVEEQGMATKDIAVNIQHAAHGTSQVDEDIARVQAGARETGAASVQVLSAAK
HHHHHHHHHHHHCCCCCHHHEEEEHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
SLSSESSRLRAEVGNFLASVRAA
HHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKIRLSITSMIVAFAVVVLVSLTAMLTTNIMALNQLRVGGPLYSQIKLGNDLVADILPPP
CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHCCCH
AYVIEAYLEATLALRRPTEWRAHAAKLEQLHRDYLDRQKYWSGSELDPVLKTRLTVDSDA
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCHH
AVQKFWRAAEQELIPALSAGDEAAAEAAYTKLDASYAAHRAIIDDIVKRANAENAELETE
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
AARQVGSYSTIVWILSGFAALLIALGVAGLAVGMVRPLVRLTAAMQAMAAGMLDVVIPGA
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHEEECCC
GRSDEIGGMAKAITAIKTNAEHKANQEAAEKSRQEHLAAEQRKADMARLADGFEDAVGEI
CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
IKTVSSAANELEAAAHSLSSTAARSLELAVGVASSSQEASAGVQSVASASEELTASVHEI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
GRQVQTSANVANEAADQARQTNERVSELSAAAARIGDVVELISNIAGQTNLLALNATIEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHH
ARAGEAGRGFAVVASEVKALAEQTGKATGEIGQQITGIQAATGESVAAIKEICSIIGQMS
HHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHH
EISSSIASAVEEQGMATKDIAVNIQHAAHGTSQVDEDIARVQAGARETGAASVQVLSAAK
HHHHHHHHHHHHCCCCCHHHEEEEHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
SLSSESSRLRAEVGNFLASVRAA
HHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]