| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
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The map label for this gene is 192288629
Identifier: 192288629
GI number: 192288629
Start: 217221
End: 217976
Strand: Reverse
Name: 192288629
Synonym: Rpal_0198
Alternate gene names: NA
Gene position: 217976-217221 (Counterclockwise)
Preceding gene: 192288630
Following gene: 192288628
Centisome position: 3.79
GC content: 64.42
Gene sequence:
>756_bases ATGAATGGTGTTGGTGGATTTTCGCGGTGGTCCGGCGCACTCGGCCTGTGCGTGACGATCGCGACGGCGGACCTTGCTGC CGCCGAGCCCCGCGCCGTGGTCGAGCTGTTCACCTCGCAAGGTTGTTCGTCCTGTCCGCCGGCGGACAGGATCATCGGTG AACTTGCACGTGATCCATCGGTGATCGCCCTGAGCCTCCCGATCGACTACTGGGACTATCTCGGCTGGAAAGACACCTTG GCCGACTCCCGTTTTACCGCTCGACAGAAAGCCTACTCGCAAGTGCGAGGCGATCGGGACGTGTTCACCCCACAGGTCGT CGTCAACGGGTCGGCGCACCTCGTCGGCAGCAATCGCGCCGGCATCGACAGCGCGATCAAGACCACCGACAAGACCGGCG GAGTCATGACCGTGCCGGTCTCGGTGGCGGTCGAGGGCAAAGAAATCAAAGTCTCGGTCGCAGCGGCGCCCCAGGGCGAG ACCGCCAAGAGCGGCGAGGTCTGGATTTGCGCGGTGTCCAAAGCGATTCCGATCGAGATCGGGCGCGGCGAGAACCGCGG CCGGCACGTCACCTACCACAACGTAGTGCGCAATCTGCTGAAGGTCGGCGATTGGACCGGTGCGGCAGAGCATTGGACGG TGCCGCTGGAGAATGTCGTCGGCGACGGCGTCGATGCGGCGGCGGTCTATGTGCAGAACGGTAGCCGCGAAAAGCCCGGT GCGATGCTCGGGGCCGCCTTCACGTCGCTGAACTAA
Upstream 100 bases:
>100_bases GGCCTATGCAAAGGGCCGCCTTTTCGTTTTAAGGCTCCTCGATGGAGGGCGGCGTGCCGCCGTCCCGAAGCACTCGGCAA AGGCGGCTCGGCAAACGACG
Downstream 100 bases:
>100_bases AGGCTGACAGCTGCGATTGGGGGAAAGCAGCCTGTGCTGCTGCGTAACCCTTGGCTGCGTGCTTCATGACCGGAAGCGAG CCGGCCCCCTTAAAACAAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 251; Mature: 251
Protein sequence:
>251_residues MNGVGGFSRWSGALGLCVTIATADLAAAEPRAVVELFTSQGCSSCPPADRIIGELARDPSVIALSLPIDYWDYLGWKDTL ADSRFTARQKAYSQVRGDRDVFTPQVVVNGSAHLVGSNRAGIDSAIKTTDKTGGVMTVPVSVAVEGKEIKVSVAAAPQGE TAKSGEVWICAVSKAIPIEIGRGENRGRHVTYHNVVRNLLKVGDWTGAAEHWTVPLENVVGDGVDAAAVYVQNGSREKPG AMLGAAFTSLN
Sequences:
>Translated_251_residues MNGVGGFSRWSGALGLCVTIATADLAAAEPRAVVELFTSQGCSSCPPADRIIGELARDPSVIALSLPIDYWDYLGWKDTL ADSRFTARQKAYSQVRGDRDVFTPQVVVNGSAHLVGSNRAGIDSAIKTTDKTGGVMTVPVSVAVEGKEIKVSVAAAPQGE TAKSGEVWICAVSKAIPIEIGRGENRGRHVTYHNVVRNLLKVGDWTGAAEHWTVPLENVVGDGVDAAAVYVQNGSREKPG AMLGAAFTSLN >Mature_251_residues MNGVGGFSRWSGALGLCVTIATADLAAAEPRAVVELFTSQGCSSCPPADRIIGELARDPSVIALSLPIDYWDYLGWKDTL ADSRFTARQKAYSQVRGDRDVFTPQVVVNGSAHLVGSNRAGIDSAIKTTDKTGGVMTVPVSVAVEGKEIKVSVAAAPQGE TAKSGEVWICAVSKAIPIEIGRGENRGRHVTYHNVVRNLLKVGDWTGAAEHWTVPLENVVGDGVDAAAVYVQNGSREKPG AMLGAAFTSLN
Specific function: Unknown
COG id: COG5429
COG function: function code S; Uncharacterized secreted protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26392; Mature: 26392
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNGVGGFSRWSGALGLCVTIATADLAAAEPRAVVELFTSQGCSSCPPADRIIGELARDPS CCCCCCCHHHCCCCEEEEEEEHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCCC VIALSLPIDYWDYLGWKDTLADSRFTARQKAYSQVRGDRDVFTPQVVVNGSAHLVGSNRA EEEEEECCHHHHHCCCHHHHCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCEEEEECCCC GIDSAIKTTDKTGGVMTVPVSVAVEGKEIKVSVAAAPQGETAKSGEVWICAVSKAIPIEI CCCHHHHCCCCCCCEEEEEEEEEECCCEEEEEEEECCCCCCCCCCCEEEEEECCCCEEEE GRGENRGRHVTYHNVVRNLLKVGDWTGAAEHWTVPLENVVGDGVDAAAVYVQNGSREKPG CCCCCCCCEEEHHHHHHHHHHHCCCCCCCCEEECCHHHHHCCCCCEEEEEEECCCCCCCC AMLGAAFTSLN HHHHHHHHCCC >Mature Secondary Structure MNGVGGFSRWSGALGLCVTIATADLAAAEPRAVVELFTSQGCSSCPPADRIIGELARDPS CCCCCCCHHHCCCCEEEEEEEHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCCC VIALSLPIDYWDYLGWKDTLADSRFTARQKAYSQVRGDRDVFTPQVVVNGSAHLVGSNRA EEEEEECCHHHHHCCCHHHHCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCEEEEECCCC GIDSAIKTTDKTGGVMTVPVSVAVEGKEIKVSVAAAPQGETAKSGEVWICAVSKAIPIEI CCCHHHHCCCCCCCEEEEEEEEEECCCEEEEEEEECCCCCCCCCCCEEEEEECCCCEEEE GRGENRGRHVTYHNVVRNLLKVGDWTGAAEHWTVPLENVVGDGVDAAAVYVQNGSREKPG CCCCCCCCEEEHHHHHHHHHHHCCCCCCCCEEECCHHHHHCCCCCEEEEEEECCCCCCCC AMLGAAFTSLN HHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA