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The map label for this gene is yhcM [H]

Identifier: 192288621

GI number: 192288621

Start: 206289

End: 207473

Strand: Reverse

Name: yhcM [H]

Synonym: Rpal_0188

Alternate gene names: 192288621

Gene position: 207473-206289 (Counterclockwise)

Preceding gene: 192288622

Following gene: 192288620

Centisome position: 3.61

GC content: 63.29

Gene sequence:

>1185_bases
ATGTCCTCGCCGCACTCGCTCCGCCAGCAATATCAATCCCTGATCGCCTCCGGCAGCATCGAAGCCGATCCGGCGCAGGC
TCGCGCGGTGCAGGCCTTCACGCTCCTCAACGAGACGCTCGATGGCTATAAGCCACCGAAGAAGCAAGGCTTTTTCGGCC
GTCTGTTCGGCGGAGGCGATGCCGGCCAGGCGCCCCCGCAAGGGCTCTACATCCATGGCGAGGTCGGCCGCGGCAAGACC
ATGCTGATGGATCTGTTCTTCGACGCGAGCCCGATCGCGTTGAAGCGGCGGTCACACTTCCACGAATTCATGGCCGAGAC
CCATGATCGCATCAACGGCTTCCGCCAGGCGATCAAGCGCGGCGATATTCCGGATGCCGACGTGATGGAGCTGACGGCGG
CGTCGATCCTCGACGAGGCCTGGCTGCTGTGCTTCGACGAATTTCACGTCACCGACATCGCCGACGCCATGATCCTCGGC
CGGCTGTTCACCAAACTGTTCGAGCTCGGCACTGTGGTGGTGGCGACGTCCAACGTCGCGCCCGACGACCTCTACAAGGG
CGGCCTCAACCGTTCGCTGTTCATGCCGTTCATCGGTCAGGTGAAACGGCATATGCGGGTGATCCGCCTCGACGCGCGAA
CCGATTACCGCCTGGAGAAATTCGCCGGCATGAAGGTCTGGCTGGCGCCCGACGATGCCGAGGCGACCGCGACGATCGAC
CGGGCGTGGCACCGGATCACCGGTACGACGAAGGGTGAGCCGCGCGATATTTCGATCAAGGGCCGCATCCTGCACGTACC
GCAGGCCGACCATCACGTCGCGCGGTTTTCGTTCGCCGATTTGTGCCAGAAGCCGCTGGGGGCCAGCGATTACCTGCGGC
TCGCACATGAATATCACACGCTGATGATCGATCATGTGCCGGTGATGGACTACGCCGATCGTAACGCCGCCAAGCGGTTC
ATCGCGCTGATCGATACGCTGTACGACAACTCGGTGAAGCTGATGGCCTCAGCCGCCGCTGAGCCGGCACGGCTCTACCG
CGCCACGGAAGGCTTCGAGGCGCTGGAATTCAATCGCACCGTCTCCCGTCTCACAGAAATGGGATCGGAATCGTATCTGG
CGCTGCCGCACGGCCGGCGCGACTCCACCGCCACCGGTGAGACCACCGGATTGGTCGAAACCTAG

Upstream 100 bases:

>100_bases
TACGAGCTGACCGCCTGACGAGGCACCTCGTTATCGCGCATAGCTCTCCGACCGATTCCCGGCTTGCATTTTGCCGCCCG
ATCAGGCGGTAAAAGGCCGC

Downstream 100 bases:

>100_bases
GTGTGTTCCGAGCCTCCCGCAGTTTGCAGGGCGGCCGGTCCAACAAATGGGCGCTCGCCGACTTGAACGCATGGGGCGAA
AGCGATAACCACCCAAGCGG

Product: AFG1-family ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 394; Mature: 393

Protein sequence:

>394_residues
MSSPHSLRQQYQSLIASGSIEADPAQARAVQAFTLLNETLDGYKPPKKQGFFGRLFGGGDAGQAPPQGLYIHGEVGRGKT
MLMDLFFDASPIALKRRSHFHEFMAETHDRINGFRQAIKRGDIPDADVMELTAASILDEAWLLCFDEFHVTDIADAMILG
RLFTKLFELGTVVVATSNVAPDDLYKGGLNRSLFMPFIGQVKRHMRVIRLDARTDYRLEKFAGMKVWLAPDDAEATATID
RAWHRITGTTKGEPRDISIKGRILHVPQADHHVARFSFADLCQKPLGASDYLRLAHEYHTLMIDHVPVMDYADRNAAKRF
IALIDTLYDNSVKLMASAAAEPARLYRATEGFEALEFNRTVSRLTEMGSESYLALPHGRRDSTATGETTGLVET

Sequences:

>Translated_394_residues
MSSPHSLRQQYQSLIASGSIEADPAQARAVQAFTLLNETLDGYKPPKKQGFFGRLFGGGDAGQAPPQGLYIHGEVGRGKT
MLMDLFFDASPIALKRRSHFHEFMAETHDRINGFRQAIKRGDIPDADVMELTAASILDEAWLLCFDEFHVTDIADAMILG
RLFTKLFELGTVVVATSNVAPDDLYKGGLNRSLFMPFIGQVKRHMRVIRLDARTDYRLEKFAGMKVWLAPDDAEATATID
RAWHRITGTTKGEPRDISIKGRILHVPQADHHVARFSFADLCQKPLGASDYLRLAHEYHTLMIDHVPVMDYADRNAAKRF
IALIDTLYDNSVKLMASAAAEPARLYRATEGFEALEFNRTVSRLTEMGSESYLALPHGRRDSTATGETTGLVET
>Mature_393_residues
SSPHSLRQQYQSLIASGSIEADPAQARAVQAFTLLNETLDGYKPPKKQGFFGRLFGGGDAGQAPPQGLYIHGEVGRGKTM
LMDLFFDASPIALKRRSHFHEFMAETHDRINGFRQAIKRGDIPDADVMELTAASILDEAWLLCFDEFHVTDIADAMILGR
LFTKLFELGTVVVATSNVAPDDLYKGGLNRSLFMPFIGQVKRHMRVIRLDARTDYRLEKFAGMKVWLAPDDAEATATIDR
AWHRITGTTKGEPRDISIKGRILHVPQADHHVARFSFADLCQKPLGASDYLRLAHEYHTLMIDHVPVMDYADRNAAKRFI
ALIDTLYDNSVKLMASAAAEPARLYRATEGFEALEFNRTVSRLTEMGSESYLALPHGRRDSTATGETTGLVET

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=409, Percent_Identity=37.1638141809291, Blast_Score=263, Evalue=2e-70,
Organism=Escherichia coli, GI1789627, Length=374, Percent_Identity=37.1657754010695, Blast_Score=239, Evalue=2e-64,
Organism=Caenorhabditis elegans, GI17505769, Length=415, Percent_Identity=34.4578313253012, Blast_Score=226, Evalue=1e-59,
Organism=Saccharomyces cerevisiae, GI6320783, Length=401, Percent_Identity=32.6683291770574, Blast_Score=190, Evalue=4e-49,
Organism=Drosophila melanogaster, GI20129913, Length=420, Percent_Identity=34.2857142857143, Blast_Score=224, Evalue=6e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 43903; Mature: 43771

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSPHSLRQQYQSLIASGSIEADPAQARAVQAFTLLNETLDGYKPPKKQGFFGRLFGGGD
CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
AGQAPPQGLYIHGEVGRGKTMLMDLFFDASPIALKRRSHFHEFMAETHDRINGFRQAIKR
CCCCCCCCEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GDIPDADVMELTAASILDEAWLLCFDEFHVTDIADAMILGRLFTKLFELGTVVVATSNVA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCC
PDDLYKGGLNRSLFMPFIGQVKRHMRVIRLDARTDYRLEKFAGMKVWLAPDDAEATATID
CHHHHHCCCCCHHHHHHHHHHHHHHEEEEECCCCCHHHHHHCCCEEEECCCCCCHHHHHH
RAWHRITGTTKGEPRDISIKGRILHVPQADHHVARFSFADLCQKPLGASDYLRLAHEYHT
HHHHHHCCCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LMIDHVPVMDYADRNAAKRFIALIDTLYDNSVKLMASAAAEPARLYRATEGFEALEFNRT
HHEECCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHCCCHHHHHHHH
VSRLTEMGSESYLALPHGRRDSTATGETTGLVET
HHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SSPHSLRQQYQSLIASGSIEADPAQARAVQAFTLLNETLDGYKPPKKQGFFGRLFGGGD
CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
AGQAPPQGLYIHGEVGRGKTMLMDLFFDASPIALKRRSHFHEFMAETHDRINGFRQAIKR
CCCCCCCCEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GDIPDADVMELTAASILDEAWLLCFDEFHVTDIADAMILGRLFTKLFELGTVVVATSNVA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCC
PDDLYKGGLNRSLFMPFIGQVKRHMRVIRLDARTDYRLEKFAGMKVWLAPDDAEATATID
CHHHHHCCCCCHHHHHHHHHHHHHHEEEEECCCCCHHHHHHCCCEEEECCCCCCHHHHHH
RAWHRITGTTKGEPRDISIKGRILHVPQADHHVARFSFADLCQKPLGASDYLRLAHEYHT
HHHHHHCCCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LMIDHVPVMDYADRNAAKRFIALIDTLYDNSVKLMASAAAEPARLYRATEGFEALEFNRT
HHEECCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHCCCHHHHHHHH
VSRLTEMGSESYLALPHGRRDSTATGETTGLVET
HHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]