| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
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The map label for this gene is sam [H]
Identifier: 192288589
GI number: 192288589
Start: 169956
End: 170861
Strand: Reverse
Name: sam [H]
Synonym: Rpal_0156
Alternate gene names: 192288589
Gene position: 170861-169956 (Counterclockwise)
Preceding gene: 192288600
Following gene: 192288583
Centisome position: 2.97
GC content: 67.22
Gene sequence:
>906_bases ATGGGGCTGTTCGCCAAAATCACCACCGCGTCCGACCCGCGCACCGCCCGGATCGCCGGCATCCTGCTGATGCTGCTGGC GATGCTGGCGTTTTCGTTCGCCGACGCAGCCGGCAAGACCGTCGTGGCGATCTATTCGGTCGGGCAACTGCTGGTGCTGC GGGCATTGGCCGGACTGCTGGTGCTGTCGCCGCTGATCTGGCGCCAGCGCAAGGCGTTCCTGCAGCTGGAGAGGCCGGGT CTGCAACTGGCGCGGACGCTGATCGCGGCCTGCGAAGTCGCGGTGTTCTATCTGGCGACCGCCTATCTGCCGCTCGCCGA CGTCATCACCTTCTATCTCGCCTCGTCGCTGTTCGTCTCGGTCGGCGCTGCGTTGTTTCTGGGTGAGACCATCGACCGGC CGCGCGGGATCGCGATCGTTGTCGGCTTTGTCGGCGTGCTGATCGCGCTGCAGCCGTCGACCCAGACCATGAGCTGGCCG GCGCTGATCGCGATTCTTGCCAGCGTGCTGTTTGCAGGCCTGCTGTTGCTGACGCGGTTCCTGCGCCAGACCCCCGACAT GGTGCTGGCCTCGCAGCAGTTCGCCGGCACGCTGCTGCTCGGCCTCGTGCTGGCACCATCGGGCTGGATCACGCCGTCGG CGACCGATCTGGTGTGGTTTGCGATCTCAGGTGCGGTGTCGGCGGTCGGTCTGCTGTGCGTCAACCGCTCGCTGCGGCTG GCGCCGGCGAGCGTCGTGGTGCCGTATCAGTACACGATGATCATTTTCGCCGCCGCGTTCGGCTGGCTGCTGTTCGGCGA TGTGCCGTCGCGGGCGACGGTGGCCGGCGTCGCGATTATCATCGCGGCCGGGCTTTATCTCGGTTGGCGCGAGCGCAGCA CATCGCGGCCGCCCGTAGGCGGTTGA
Upstream 100 bases:
>100_bases CCGCCGCTGCGGCGGTCTGAAAGTCGAAGCGACCCTGCGCCACCTTGCGCCCGCTTGCGCCTCGGGGCGATAAGCGCCGA CCGCAACCATACGGGCCAAT
Downstream 100 bases:
>100_bases TTACTCGCCGACCCGGAGCGCCAGCCCGCTGAATCGTTCGCTCAGCACGCGCGCGCGTTCGCGGCGTTCCTCGATCAGGA GCTTGCGCTCGGTCGCCTCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 301; Mature: 300
Protein sequence:
>301_residues MGLFAKITTASDPRTARIAGILLMLLAMLAFSFADAAGKTVVAIYSVGQLLVLRALAGLLVLSPLIWRQRKAFLQLERPG LQLARTLIAACEVAVFYLATAYLPLADVITFYLASSLFVSVGAALFLGETIDRPRGIAIVVGFVGVLIALQPSTQTMSWP ALIAILASVLFAGLLLLTRFLRQTPDMVLASQQFAGTLLLGLVLAPSGWITPSATDLVWFAISGAVSAVGLLCVNRSLRL APASVVVPYQYTMIIFAAAFGWLLFGDVPSRATVAGVAIIIAAGLYLGWRERSTSRPPVGG
Sequences:
>Translated_301_residues MGLFAKITTASDPRTARIAGILLMLLAMLAFSFADAAGKTVVAIYSVGQLLVLRALAGLLVLSPLIWRQRKAFLQLERPG LQLARTLIAACEVAVFYLATAYLPLADVITFYLASSLFVSVGAALFLGETIDRPRGIAIVVGFVGVLIALQPSTQTMSWP ALIAILASVLFAGLLLLTRFLRQTPDMVLASQQFAGTLLLGLVLAPSGWITPSATDLVWFAISGAVSAVGLLCVNRSLRL APASVVVPYQYTMIIFAAAFGWLLFGDVPSRATVAGVAIIIAAGLYLGWRERSTSRPPVGG >Mature_300_residues GLFAKITTASDPRTARIAGILLMLLAMLAFSFADAAGKTVVAIYSVGQLLVLRALAGLLVLSPLIWRQRKAFLQLERPGL QLARTLIAACEVAVFYLATAYLPLADVITFYLASSLFVSVGAALFLGETIDRPRGIAIVVGFVGVLIALQPSTQTMSWPA LIAILASVLFAGLLLLTRFLRQTPDMVLASQQFAGTLLLGLVLAPSGWITPSATDLVWFAISGAVSAVGLLCVNRSLRLA PASVVVPYQYTMIIFAAAFGWLLFGDVPSRATVAGVAIIIAAGLYLGWRERSTSRPPVGG
Specific function: Transports S-adenosylmethionine [H]
COG id: COG0697
COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the drug/metabolite transporter (DMT) superfamily. 10 TMS drug/metabolite exporter (TC 2.A.7.3) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 31850; Mature: 31719
Theoretical pI: Translated: 10.47; Mature: 10.47
Prosite motif: PS00962 RIBOSOMAL_S2_1 ; PS00237 G_PROTEIN_RECEP_F1_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGLFAKITTASDPRTARIAGILLMLLAMLAFSFADAAGKTVVAIYSVGQLLVLRALAGLL CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHH VLSPLIWRQRKAFLQLERPGLQLARTLIAACEVAVFYLATAYLPLADVITFYLASSLFVS HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VGAALFLGETIDRPRGIAIVVGFVGVLIALQPSTQTMSWPALIAILASVLFAGLLLLTRF HHHHHHHHHHCCCCCCHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH LRQTPDMVLASQQFAGTLLLGLVLAPSGWITPSATDLVWFAISGAVSAVGLLCVNRSLRL HHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEE APASVVVPYQYTMIIFAAAFGWLLFGDVPSRATVAGVAIIIAAGLYLGWRERSTSRPPVG CCCEEEECHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC G C >Mature Secondary Structure GLFAKITTASDPRTARIAGILLMLLAMLAFSFADAAGKTVVAIYSVGQLLVLRALAGLL CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHH VLSPLIWRQRKAFLQLERPGLQLARTLIAACEVAVFYLATAYLPLADVITFYLASSLFVS HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VGAALFLGETIDRPRGIAIVVGFVGVLIALQPSTQTMSWPALIAILASVLFAGLLLLTRF HHHHHHHHHHCCCCCCHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH LRQTPDMVLASQQFAGTLLLGLVLAPSGWITPSATDLVWFAISGAVSAVGLLCVNRSLRL HHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEE APASVVVPYQYTMIIFAAAFGWLLFGDVPSRATVAGVAIIIAAGLYLGWRERSTSRPPVG CCCEEEECHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC G C
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA