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The map label for this gene is ytcJ [H]

Identifier: 192288541

GI number: 192288541

Start: 117927

End: 119570

Strand: Reverse

Name: ytcJ [H]

Synonym: Rpal_0108

Alternate gene names: 192288541

Gene position: 119570-117927 (Counterclockwise)

Preceding gene: 192288543

Following gene: 192288540

Centisome position: 2.08

GC content: 66.06

Gene sequence:

>1644_bases
GTGACGTCCGAAACCGTCGTTTATTCCGCCCGCAAAATTATCACCATGAATCCGTCGCGGCCGAGTGCGACGCATGTTGC
GGTGCGGGACGGGCGGATCGTTGCGACCGGCAGCGCCGACGAACTGATGGTAACCGGCGCCCGGCTCGATACTCGCTTCG
CCGACAAGGTGCTGATGCCCGGTTTCGTCGAAGGCCACAGCCACATCATGGAAGGCCTGATGTGGAAGCAGCCCTATGTG
GGCGCGTTCGACCGCCGTTCGCCGGAAGGCAAAGTAGTCGCCGGTGTGCCGGACATCGAGGCGATCGTGGCGCGGCTGCA
GCAGGCCGAGGCCGCGATGCCGGACGACGGTTCCCCGCTTTACGCTTGGGGCTTCGATCCGCTGCATATCGGCGGCACGA
TGCTGACCCGGCAGGATCTCGACAAGGTGTCGACCAAGCGTCCAGTCCTCGTCGTCCACGCCTCGTTCCACATCAACAAC
GTCAACACGCTGACGCTTGAGCGCGCCGAGCTGCTGCATGCCACCAACATCTCGGGTGTCGTCGCCGGCGCCGACGGCTT
GGCGAGCGGCGAGCTGCAGGGCATTCCGGCGCGGATGCGGCTGTTCCGTGCGCTCGGCCACAATCCGCTCGCTGGTACCA
TCACCGAGGCGGACGTGCGGCGCTATGCGGCGTCGTGCTGCGTGCAGGGCGTCACCACGATTACCGACCTGCATAACGAT
CTCGCCGATCCGACCATCGAGGTCTATCGCGCCGCGACCAGCCAGGCCGATTTCGGCGTTCGCTTGGTGCCGGCGCTGGC
CGCGGTGTCGCACACGCCCGAACAGGCGATCGCCAAGTTGGAAACGCTGCGCGGCCACGCCAGCGACAAGCTGCATTATG
GCATCGTCAAGCTGGTGGTCGATGGCTCGATCCAGGGCTTCACCGCACGGCTGCGCTGGCCCGGCTATCACAACGGTGCC
GCCAACGGCCTGTGGTACATCGCGCCCGAAGAGCTGCCGCGACTGGTCGAAGCGTATCACCGCGCCGGCGTGCAGCTTCA
CATTCACACCAACGGCGACGAGGCCACCGAAGTGGCGCTCGATGCGATCGAGGCGGCACAGACCGTCGCGCCTCGTCCCG
ATCATCGCCACACCTTGCAGCACTGCCAGATGGCCAGCGCCGCGCAGTTCCGGCGGATGAAGAACCTTGGCGTTTGCGCC
AATCTGTTCGCCAACCACCTGTACTACTGGGGCGACGCGCACTACGAGCTGACGATGGGGCCGGAGCGGGCGGCACGGCT
CGACGCGACCGGGACCGCACAGCGGATCGGGGTGCCGTTCGCGATCCACTCCGACGCGCCGGTGACACCGCTGGCGCCGC
TGTTCACCGCATGGTGTGCGGTCAATCGCGTGTCGTCGAGCGGGCGTGTGCTGGGCCGGGATACCGAAGCGCTCACGACC
GAGCAGGCGCTTGCTGCAATCACCATCGGCGCAGCCTATACTTTGAAGATGGATCATCTGGTCGGCAGCATTGAGACCGG
CAAGTATGCCGACTTCGTCGTGCTCGATGAGGATCCGCTGGCCGTTCCGCCGGAGCGGCTCAAGGAGATCGCGGTCTGGG
GCACCGTGGTCGGCGGCATGATCAAGGAGGCGCCCCGCGCATGA

Upstream 100 bases:

>100_bases
GGCTGACGCATGGCCCTGGCTCCATTCGTGCTCGGCATCTGGCGCTAGTGCCGCCGGGACGATCGCTTCACGCTCGCAAT
CGCAAGCCTGGAGACTAAGC

Downstream 100 bases:

>100_bases
CGGCAGCATCCGCGACCATTTCAGTCACGGTAATCGGCGGCTTTCTCGGCGCGGGCAAAACCACCTTCGTCAATCACCTG
CTGCGCAGCGGCGGCCCTCG

Product: Amidohydrolase 3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 547; Mature: 546

Protein sequence:

>547_residues
MTSETVVYSARKIITMNPSRPSATHVAVRDGRIVATGSADELMVTGARLDTRFADKVLMPGFVEGHSHIMEGLMWKQPYV
GAFDRRSPEGKVVAGVPDIEAIVARLQQAEAAMPDDGSPLYAWGFDPLHIGGTMLTRQDLDKVSTKRPVLVVHASFHINN
VNTLTLERAELLHATNISGVVAGADGLASGELQGIPARMRLFRALGHNPLAGTITEADVRRYAASCCVQGVTTITDLHND
LADPTIEVYRAATSQADFGVRLVPALAAVSHTPEQAIAKLETLRGHASDKLHYGIVKLVVDGSIQGFTARLRWPGYHNGA
ANGLWYIAPEELPRLVEAYHRAGVQLHIHTNGDEATEVALDAIEAAQTVAPRPDHRHTLQHCQMASAAQFRRMKNLGVCA
NLFANHLYYWGDAHYELTMGPERAARLDATGTAQRIGVPFAIHSDAPVTPLAPLFTAWCAVNRVSSSGRVLGRDTEALTT
EQALAAITIGAAYTLKMDHLVGSIETGKYADFVVLDEDPLAVPPERLKEIAVWGTVVGGMIKEAPRA

Sequences:

>Translated_547_residues
MTSETVVYSARKIITMNPSRPSATHVAVRDGRIVATGSADELMVTGARLDTRFADKVLMPGFVEGHSHIMEGLMWKQPYV
GAFDRRSPEGKVVAGVPDIEAIVARLQQAEAAMPDDGSPLYAWGFDPLHIGGTMLTRQDLDKVSTKRPVLVVHASFHINN
VNTLTLERAELLHATNISGVVAGADGLASGELQGIPARMRLFRALGHNPLAGTITEADVRRYAASCCVQGVTTITDLHND
LADPTIEVYRAATSQADFGVRLVPALAAVSHTPEQAIAKLETLRGHASDKLHYGIVKLVVDGSIQGFTARLRWPGYHNGA
ANGLWYIAPEELPRLVEAYHRAGVQLHIHTNGDEATEVALDAIEAAQTVAPRPDHRHTLQHCQMASAAQFRRMKNLGVCA
NLFANHLYYWGDAHYELTMGPERAARLDATGTAQRIGVPFAIHSDAPVTPLAPLFTAWCAVNRVSSSGRVLGRDTEALTT
EQALAAITIGAAYTLKMDHLVGSIETGKYADFVVLDEDPLAVPPERLKEIAVWGTVVGGMIKEAPRA
>Mature_546_residues
TSETVVYSARKIITMNPSRPSATHVAVRDGRIVATGSADELMVTGARLDTRFADKVLMPGFVEGHSHIMEGLMWKQPYVG
AFDRRSPEGKVVAGVPDIEAIVARLQQAEAAMPDDGSPLYAWGFDPLHIGGTMLTRQDLDKVSTKRPVLVVHASFHINNV
NTLTLERAELLHATNISGVVAGADGLASGELQGIPARMRLFRALGHNPLAGTITEADVRRYAASCCVQGVTTITDLHNDL
ADPTIEVYRAATSQADFGVRLVPALAAVSHTPEQAIAKLETLRGHASDKLHYGIVKLVVDGSIQGFTARLRWPGYHNGAA
NGLWYIAPEELPRLVEAYHRAGVQLHIHTNGDEATEVALDAIEAAQTVAPRPDHRHTLQHCQMASAAQFRRMKNLGVCAN
LFANHLYYWGDAHYELTMGPERAARLDATGTAQRIGVPFAIHSDAPVTPLAPLFTAWCAVNRVSSSGRVLGRDTEALTTE
QALAAITIGAAYTLKMDHLVGSIETGKYADFVVLDEDPLAVPPERLKEIAVWGTVVGGMIKEAPRA

Specific function: Unknown

COG id: COG1574

COG function: function code R; Predicted metal-dependent hydrolase with the TIM-barrel fold

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013108
- InterPro:   IPR011059 [H]

Pfam domain/function: PF07969 Amidohydro_3 [H]

EC number: NA

Molecular weight: Translated: 59038; Mature: 58907

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSETVVYSARKIITMNPSRPSATHVAVRDGRIVATGSADELMVTGARLDTRFADKVLMP
CCCCEEEEECEEEEEECCCCCCCEEEEEECCEEEEECCCCCEEEECCHHHHHHHHHHCCC
GFVEGHSHIMEGLMWKQPYVGAFDRRSPEGKVVAGVPDIEAIVARLQQAEAAMPDDGSPL
CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCCEE
YAWGFDPLHIGGTMLTRQDLDKVSTKRPVLVVHASFHINNVNTLTLERAELLHATNISGV
EEECCCEEECCCCHHHHHHHHHHCCCCCEEEEEEEEEECCCEEEEEHHHHHHHHCCCCEE
VAGADGLASGELQGIPARMRLFRALGHNPLAGTITEADVRRYAASCCVQGVTTITDLHND
EECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LADPTIEVYRAATSQADFGVRLVPALAAVSHTPEQAIAKLETLRGHASDKLHYGIVKLVV
HCCCHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHEEEEEEEE
DGSIQGFTARLRWPGYHNGAANGLWYIAPEELPRLVEAYHRAGVQLHIHTNGDEATEVAL
CCCCCCEEEEEECCCCCCCCCCCEEEECHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHH
DAIEAAQTVAPRPDHRHTLQHCQMASAAQFRRMKNLGVCANLFANHLYYWGDAHYELTMG
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCEEEECCCEEEEEEC
PERAARLDATGTAQRIGVPFAIHSDAPVTPLAPLFTAWCAVNRVSSSGRVLGRDTEALTT
HHHHHCCCCCCCHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCHHHHH
EQALAAITIGAAYTLKMDHLVGSIETGKYADFVVLDEDPLAVPPERLKEIAVWGTVVGGM
HHHHHEEEECCEEEEEEHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
IKEAPRA
HHHCCCC
>Mature Secondary Structure 
TSETVVYSARKIITMNPSRPSATHVAVRDGRIVATGSADELMVTGARLDTRFADKVLMP
CCCEEEEECEEEEEECCCCCCCEEEEEECCEEEEECCCCCEEEECCHHHHHHHHHHCCC
GFVEGHSHIMEGLMWKQPYVGAFDRRSPEGKVVAGVPDIEAIVARLQQAEAAMPDDGSPL
CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCCEE
YAWGFDPLHIGGTMLTRQDLDKVSTKRPVLVVHASFHINNVNTLTLERAELLHATNISGV
EEECCCEEECCCCHHHHHHHHHHCCCCCEEEEEEEEEECCCEEEEEHHHHHHHHCCCCEE
VAGADGLASGELQGIPARMRLFRALGHNPLAGTITEADVRRYAASCCVQGVTTITDLHND
EECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LADPTIEVYRAATSQADFGVRLVPALAAVSHTPEQAIAKLETLRGHASDKLHYGIVKLVV
HCCCHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHEEEEEEEE
DGSIQGFTARLRWPGYHNGAANGLWYIAPEELPRLVEAYHRAGVQLHIHTNGDEATEVAL
CCCCCCEEEEEECCCCCCCCCCCEEEECHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHH
DAIEAAQTVAPRPDHRHTLQHCQMASAAQFRRMKNLGVCANLFANHLYYWGDAHYELTMG
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCEEEECCCEEEEEEC
PERAARLDATGTAQRIGVPFAIHSDAPVTPLAPLFTAWCAVNRVSSSGRVLGRDTEALTT
HHHHHCCCCCCCHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCHHHHH
EQALAAITIGAAYTLKMDHLVGSIETGKYADFVVLDEDPLAVPPERLKEIAVWGTVVGGM
HHHHHEEEECCEEEEEEHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
IKEAPRA
HHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]