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The map label for this gene is yfdE [H]

Identifier: 192288494

GI number: 192288494

Start: 64647

End: 65852

Strand: Reverse

Name: yfdE [H]

Synonym: Rpal_0061

Alternate gene names: 192288494

Gene position: 65852-64647 (Counterclockwise)

Preceding gene: 192288495

Following gene: 192288493

Centisome position: 1.15

GC content: 64.84

Gene sequence:

>1206_bases
ATGACCTCTGCATCGATGCCCGGCGCAATCGCCGGATTGCGCGTGATCGATCTCACTCGCGTGCTCGGCGGCCCCTATTG
CACCCAAATCCTCGCCGACCACGGCGCCAACGTCATCAAGGTCGAACCTCCGGCCGGCGACGAAGTGCGCGACTGGGGCC
CTCCCTTCCATGACGAGGACGCGGCGTATTTTCTCGGCGTGAATCGCAACAAGCGTTCCATCGGTCTCGATCTCGCCTCG
CCCGGCGGGCGCGAGGTGCTGTTGAAGATGCTCGAAGACGCCGACGTGCTGATCGAGAATTTCAAACCCGGCACGCTCGA
CAAATGGGGCCTCTCCAACGAGGTGATTCGCGAGAAGTTTCCGCGGCTGGTGCATTGCCGGATTTCGGGCTTCGGCGCCG
ACGGCCCGCGCGGCGGCAATCCCGGTTATGACGCCATCATCCAGGCGATGACCGGCATGATCGCTGCGACCGGCTCGCCG
GAGACCGGCCCGGTGCGAATCGGTGTGCCCCTGGTCGACATCACCACCGGCCTTTATGCGACCATCGGTATTCTGATGGC
GCTGGCGGAGCGTGAGCGCTCCGGCAAGGGCCAGTTCGTGGAGACCACGCTGTACGAAACCGGTCTCGCGATCATGCATC
CGCATACCGCGAACTACTTCCTGCATGGCAAGCCGCCGGCGCTGACCGGTAACGAGCACCCGAATCTGGTGCCGTATTCC
ACCTTCAACGCCCGCGACGGCCAGATCTTCACCGGCGTCGGCAATGACGGTACCTTCCGCAAGCTGTGCAAGGAAATAGG
TAAGCCGGAACTTGGCACCGATCCGCGCTTTGCGCGCAACAAGGACCGCATCGCCAACCGCGCCGCCCTCCGCGCCGAAC
TCGAAGCGGTGTTCAGCCAGCACGACGCGGTTCCGCTGTGCGACCGGCTGCTCAATGCGGGCCTCCCGGCCGGCCCGGTG
CAGACGATCGACAAGGCGCTGACCAGCCCCCACACCGCTTACCGCGGCGATGTGATCGAGAAGGACTGGTACAAGGGCGT
AGCCTCGCCGATCAGGTTCGAGCGCACCAAGGCGAGCCTGCGCGGCCTGCCGCCGAAATTCAGCCAGCACGCCAGCGAAG
TGTTGGGCGAGTTCGGCTATTCGGCGGACGATATCTCCAAGCTGGTCGCCGACGGCATCGTCAGCGGCCCAGAGCGCAAG
CGCTGA

Upstream 100 bases:

>100_bases
TGAGAAGTACCTTAAGTCCGCTTCCGGCCGTGCGTTTGCCAAGAAGCGCCTTTGAGAGTTAAGTTCTCCGCTCCTGCAAA
GCTTCGGTAAGAAAGCCCTT

Downstream 100 bases:

>100_bases
TCACAGCGGCGCCGGCAGCTATGCCGGCGTCGCTCGTCGTGGCCGTCGCCGCTAACCAGCAGTAATTACCGCAGCGCAGC
GGCGTGCTGCGTTGCGTCAC

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 400

Protein sequence:

>401_residues
MTSASMPGAIAGLRVIDLTRVLGGPYCTQILADHGANVIKVEPPAGDEVRDWGPPFHDEDAAYFLGVNRNKRSIGLDLAS
PGGREVLLKMLEDADVLIENFKPGTLDKWGLSNEVIREKFPRLVHCRISGFGADGPRGGNPGYDAIIQAMTGMIAATGSP
ETGPVRIGVPLVDITTGLYATIGILMALAERERSGKGQFVETTLYETGLAIMHPHTANYFLHGKPPALTGNEHPNLVPYS
TFNARDGQIFTGVGNDGTFRKLCKEIGKPELGTDPRFARNKDRIANRAALRAELEAVFSQHDAVPLCDRLLNAGLPAGPV
QTIDKALTSPHTAYRGDVIEKDWYKGVASPIRFERTKASLRGLPPKFSQHASEVLGEFGYSADDISKLVADGIVSGPERK
R

Sequences:

>Translated_401_residues
MTSASMPGAIAGLRVIDLTRVLGGPYCTQILADHGANVIKVEPPAGDEVRDWGPPFHDEDAAYFLGVNRNKRSIGLDLAS
PGGREVLLKMLEDADVLIENFKPGTLDKWGLSNEVIREKFPRLVHCRISGFGADGPRGGNPGYDAIIQAMTGMIAATGSP
ETGPVRIGVPLVDITTGLYATIGILMALAERERSGKGQFVETTLYETGLAIMHPHTANYFLHGKPPALTGNEHPNLVPYS
TFNARDGQIFTGVGNDGTFRKLCKEIGKPELGTDPRFARNKDRIANRAALRAELEAVFSQHDAVPLCDRLLNAGLPAGPV
QTIDKALTSPHTAYRGDVIEKDWYKGVASPIRFERTKASLRGLPPKFSQHASEVLGEFGYSADDISKLVADGIVSGPERK
R
>Mature_400_residues
TSASMPGAIAGLRVIDLTRVLGGPYCTQILADHGANVIKVEPPAGDEVRDWGPPFHDEDAAYFLGVNRNKRSIGLDLASP
GGREVLLKMLEDADVLIENFKPGTLDKWGLSNEVIREKFPRLVHCRISGFGADGPRGGNPGYDAIIQAMTGMIAATGSPE
TGPVRIGVPLVDITTGLYATIGILMALAERERSGKGQFVETTLYETGLAIMHPHTANYFLHGKPPALTGNEHPNLVPYST
FNARDGQIFTGVGNDGTFRKLCKEIGKPELGTDPRFARNKDRIANRAALRAELEAVFSQHDAVPLCDRLLNAGLPAGPVQ
TIDKALTSPHTAYRGDVIEKDWYKGVASPIRFERTKASLRGLPPKFSQHASEVLGEFGYSADDISKLVADGIVSGPERKR

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=397, Percent_Identity=35.7682619647355, Blast_Score=258, Evalue=8e-69,
Organism=Homo sapiens, GI300863124, Length=423, Percent_Identity=33.806146572104, Blast_Score=245, Evalue=5e-65,
Organism=Homo sapiens, GI13376042, Length=423, Percent_Identity=30.4964539007092, Blast_Score=204, Evalue=1e-52,
Organism=Homo sapiens, GI300863126, Length=396, Percent_Identity=31.0606060606061, Blast_Score=202, Evalue=6e-52,
Organism=Homo sapiens, GI266456254, Length=401, Percent_Identity=28.428927680798, Blast_Score=135, Evalue=7e-32,
Organism=Homo sapiens, GI42794625, Length=407, Percent_Identity=28.2555282555283, Blast_Score=135, Evalue=8e-32,
Organism=Homo sapiens, GI266458393, Length=255, Percent_Identity=32.5490196078431, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI266458397, Length=255, Percent_Identity=32.5490196078431, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI42822893, Length=144, Percent_Identity=34.0277777777778, Blast_Score=87, Evalue=3e-17,
Organism=Homo sapiens, GI266458395, Length=144, Percent_Identity=34.0277777777778, Blast_Score=87, Evalue=3e-17,
Organism=Escherichia coli, GI87082093, Length=381, Percent_Identity=37.7952755905512, Blast_Score=262, Evalue=3e-71,
Organism=Escherichia coli, GI1788717, Length=418, Percent_Identity=30.8612440191388, Blast_Score=164, Evalue=7e-42,
Organism=Escherichia coli, GI1786222, Length=411, Percent_Identity=25.5474452554745, Blast_Score=104, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI32564160, Length=307, Percent_Identity=26.0586319218241, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI115535051, Length=260, Percent_Identity=28.4615384615385, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24648431, Length=395, Percent_Identity=39.2405063291139, Blast_Score=287, Evalue=1e-77,
Organism=Drosophila melanogaster, GI24585488, Length=412, Percent_Identity=25.7281553398058, Blast_Score=117, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 43259; Mature: 43128

Theoretical pI: Translated: 7.06; Mature: 7.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSASMPGAIAGLRVIDLTRVLGGPYCTQILADHGANVIKVEPPAGDEVRDWGPPFHDED
CCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEECCCCCCCCHHCCCCCCCCC
AAYFLGVNRNKRSIGLDLASPGGREVLLKMLEDADVLIENFKPGTLDKWGLSNEVIREKF
CEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHC
PRLVHCRISGFGADGPRGGNPGYDAIIQAMTGMIAATGSPETGPVRIGVPLVDITTGLYA
CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHEECCCCCCCCEEECCCHHHHHHHHHH
TIGILMALAERERSGKGQFVETTLYETGLAIMHPHTANYFLHGKPPALTGNEHPNLVPYS
HHHHHHHHHHHHCCCCCCEEEHHHHHCCEEEECCCCCCEEEECCCCCCCCCCCCCCCCCC
TFNARDGQIFTGVGNDGTFRKLCKEIGKPELGTDPRFARNKDRIANRAALRAELEAVFSQ
CCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
HDAVPLCDRLLNAGLPAGPVQTIDKALTSPHTAYRGDVIEKDWYKGVASPIRFERTKASL
CCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHCCCCCCHHHHHHHCCCHHHHHHHHHH
RGLPPKFSQHASEVLGEFGYSADDISKLVADGIVSGPERKR
CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TSASMPGAIAGLRVIDLTRVLGGPYCTQILADHGANVIKVEPPAGDEVRDWGPPFHDED
CCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEECCCCCCCCHHCCCCCCCCC
AAYFLGVNRNKRSIGLDLASPGGREVLLKMLEDADVLIENFKPGTLDKWGLSNEVIREKF
CEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHC
PRLVHCRISGFGADGPRGGNPGYDAIIQAMTGMIAATGSPETGPVRIGVPLVDITTGLYA
CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHEECCCCCCCCEEECCCHHHHHHHHHH
TIGILMALAERERSGKGQFVETTLYETGLAIMHPHTANYFLHGKPPALTGNEHPNLVPYS
HHHHHHHHHHHHCCCCCCEEEHHHHHCCEEEECCCCCCEEEECCCCCCCCCCCCCCCCCC
TFNARDGQIFTGVGNDGTFRKLCKEIGKPELGTDPRFARNKDRIANRAALRAELEAVFSQ
CCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
HDAVPLCDRLLNAGLPAGPVQTIDKALTSPHTAYRGDVIEKDWYKGVASPIRFERTKASL
CCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHCCCCCCHHHHHHHCCCHHHHHHHHHH
RGLPPKFSQHASEVLGEFGYSADDISKLVADGIVSGPERKR
CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]