Click here to switch to the map view.

The map label for this gene is ybjT [C]

Identifier: 192288479

GI number: 192288479

Start: 50621

End: 51586

Strand: Reverse

Name: ybjT [C]

Synonym: Rpal_0046

Alternate gene names: 192288479

Gene position: 51586-50621 (Counterclockwise)

Preceding gene: 192288488

Following gene: 192288477

Centisome position: 0.9

GC content: 67.7

Gene sequence:

>966_bases
ATGACTTCGAATATCGACACGCTCGTCACGGTTTTCGGTGGCTCAGGCTTCCTCGGCCGGCACGTCGTCAGCGCGCTGGC
GCGGCGCGACTATCGGATTCGGGTCGCGGTCCGTCGTCCTGAGCTTGCTGGGCATCTGCAGCCGCTCGGCCGTGTCGGGC
AGATCCACGCCGTGCAGGCGAATCTGCGTTACCCCGAATCGGTCGCGGCGGCGATGCGCGGCTCGCACGTGGCGATCAAC
CTGGTCGGCATTCTCGCCGAGGGCGGCGCGCAGAAATTCGACGCGGTGCAGGGCAGTGGTGCCGCCACCGTGGCGCAGGC
GGCGGCTTCAGTCGGTGCCCGCATGGTGCACATCTCGGCGATCGGCGCCGATGCGAATTCGCCGGCCCGCTACGCACGCA
GCAAGGCCGCCGGCGAACAGGCGGTGCTTGCCGCGGTGCCGCAGGCCACCATCTTCCGTCCCTCGGTGGTGTTCGGCCCG
GAAGACCAGTTCACCAACCGCTTCGCCATGCTGGCGCGGATGTCGCCGGTGCTGCCGCTGGTCGGCGCCGACACCAAGCT
GCAGCCGGTCTATGTCGGCGATGTCGCGACGGCGATTGCCGATGCGGTCGATGATCTCGCCAAGCCGGGCGCGACCTACG
AACTCGGCGGTCCGGAAGAGCTGACGATGCGCGAAATCATGCGCATCATTCTGCAGACCACCGATCGCAATCCGCTATTG
GTGCCGCTGCCGTTCGGTCTCGCCAGCCTGCAGGCGATGCTGCTGCAGTTCGCGCCGGGCGCGTTCAAGCTGACGCCGGA
TCAGGTGCGGATGCTGGAGGTCGACAACGTGGTGTCGGAAGCCGCCAAGTCGGCCGGGCTGACGCTGCAGGGCCTCGGCA
TACAGCCCGATTCGCTGCAGGCGATCGTGCCGTCCTATCTGTGGCGGTTCCGCAAGACCGGCCAGTTCGCGCGCAAGACC
GCGTAA

Upstream 100 bases:

>100_bases
GCTGTACACCGGAAGGTTGATGGCGTAACGCGAAACCGCCAGAATGTCCGCGAATTCCCGGACGTCTAAAGACGCTCCTC
CGCGATCAGGATCAGCCCGC

Downstream 100 bases:

>100_bases
GCGAACCGCAGCGGCGTCCCTTAAGGACGCCGCGTTCCGAGAGAAGTCGTTACAGCCCCAGCGCCAGCGCGATCAGGCCG
AGCGTGCCGACAATCACGCG

Product: NADH dehydrogenase (ubiquinone)

Products: NAD+; ubiquinol

Alternate protein names: NADH Dehydrogenase; NADH-Ubiquinone Oxidoreductase; 3-Beta Hydroxysteroid Dehydrogenase/Isomerase; Oxidoreductase; Nucleoside-Diphosphate-Sugar Epimerase; NADH-Ubiquinone Oxidoreductase Subunit; 3-Beta Hydroxysteroid Dehydrogenase/Isomerase Family; NADH-Ubiquinone Oxireductase; NADH Dehydrogenase/Oxidoreductase-Like Protein; NADH-Ubiquinone Oxidoreductase Family Protein; NAD-Dependent Epimerase/Dehydratase Family Protein; NAD Dependent Epimerase/Dehydratase Family Protein; 3-Beta-Hydroxy-Delta(5)-Steroid Dehydrogenase; NADH Ubiquinone Oxidoreductase; Nucleoside-Diphosphate-Sugar Epimerases; NADH Dehydrogenase 1 Alpha Subcomplex; Dehydrogenase; NADH Dehydrogenase/NADH Dehydrogenase Protein; Ubiquinone Dependent NADH Dehydrogenase; NADH Dehydrogenase Subunit; Homolog NADH Dehydrogenase; NAD Dependent Epimerase; Nucleoside-Diphosphate Sugar Epimerase; NAD Dependent Epimerase/Dehydratase Family; NADH-Ubiquinone Oxidoreductase -Like Protein; NADH-Ubiquinone Oxidoreductase Putativ; NADH-Quinone Oxidoreductase

Number of amino acids: Translated: 321; Mature: 320

Protein sequence:

>321_residues
MTSNIDTLVTVFGGSGFLGRHVVSALARRDYRIRVAVRRPELAGHLQPLGRVGQIHAVQANLRYPESVAAAMRGSHVAIN
LVGILAEGGAQKFDAVQGSGAATVAQAAASVGARMVHISAIGADANSPARYARSKAAGEQAVLAAVPQATIFRPSVVFGP
EDQFTNRFAMLARMSPVLPLVGADTKLQPVYVGDVATAIADAVDDLAKPGATYELGGPEELTMREIMRIILQTTDRNPLL
VPLPFGLASLQAMLLQFAPGAFKLTPDQVRMLEVDNVVSEAAKSAGLTLQGLGIQPDSLQAIVPSYLWRFRKTGQFARKT
A

Sequences:

>Translated_321_residues
MTSNIDTLVTVFGGSGFLGRHVVSALARRDYRIRVAVRRPELAGHLQPLGRVGQIHAVQANLRYPESVAAAMRGSHVAIN
LVGILAEGGAQKFDAVQGSGAATVAQAAASVGARMVHISAIGADANSPARYARSKAAGEQAVLAAVPQATIFRPSVVFGP
EDQFTNRFAMLARMSPVLPLVGADTKLQPVYVGDVATAIADAVDDLAKPGATYELGGPEELTMREIMRIILQTTDRNPLL
VPLPFGLASLQAMLLQFAPGAFKLTPDQVRMLEVDNVVSEAAKSAGLTLQGLGIQPDSLQAIVPSYLWRFRKTGQFARKT
A
>Mature_320_residues
TSNIDTLVTVFGGSGFLGRHVVSALARRDYRIRVAVRRPELAGHLQPLGRVGQIHAVQANLRYPESVAAAMRGSHVAINL
VGILAEGGAQKFDAVQGSGAATVAQAAASVGARMVHISAIGADANSPARYARSKAAGEQAVLAAVPQATIFRPSVVFGPE
DQFTNRFAMLARMSPVLPLVGADTKLQPVYVGDVATAIADAVDDLAKPGATYELGGPEELTMREIMRIILQTTDRNPLLV
PLPFGLASLQAMLLQFAPGAFKLTPDQVRMLEVDNVVSEAAKSAGLTLQGLGIQPDSLQAIVPSYLWRFRKTGQFARKTA

Specific function: Unknown

COG id: COG0702

COG function: function code MG; Predicted nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI6681764, Length=297, Percent_Identity=32.996632996633, Blast_Score=143, Evalue=2e-34,
Organism=Caenorhabditis elegans, GI17556106, Length=239, Percent_Identity=33.8912133891213, Blast_Score=125, Evalue=2e-29,
Organism=Drosophila melanogaster, GI24667554, Length=232, Percent_Identity=34.4827586206897, Blast_Score=116, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 1.6.5.3; 1.6.99.3

Molecular weight: Translated: 33944; Mature: 33812

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSNIDTLVTVFGGSGFLGRHVVSALARRDYRIRVAVRRPELAGHLQPLGRVGQIHAVQA
CCCCCCEEEEEECCCCCHHHHHHHHHHHCCEEEEEEEECCHHHHHHHHHHCCCEEEEEEE
NLRYPESVAAAMRGSHVAINLVGILAEGGAQKFDAVQGSGAATVAQAAASVGARMVHISA
CCCCCHHHHHHHCCCEEEEEEEEEEECCCCCHHHHHCCCCHHHHHHHHHHHCCEEEEEEE
IGADANSPARYARSKAAGEQAVLAAVPQATIFRPSVVFGPEDQFTNRFAMLARMSPVLPL
ECCCCCCHHHHHHHHHCCCHHHHHHCCCCCEECCEEEECCCHHHHHHHHHHHHHCCCCEE
VGADTKLQPVYVGDVATAIADAVDDLAKPGATYELGGPEELTMREIMRIILQTTDRNPLL
ECCCCCCCEEEEHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCEE
VPLPFGLASLQAMLLQFAPGAFKLTPDQVRMLEVDNVVSEAAKSAGLTLQGLGIQPDSLQ
EECCCCHHHHHHHHHHHCCCCEEECHHHHEEHHHHHHHHHHHHHCCCEEEECCCCCCHHH
AIVPSYLWRFRKTGQFARKTA
HHHHHHHHHHHHCCCHHHCCC
>Mature Secondary Structure 
TSNIDTLVTVFGGSGFLGRHVVSALARRDYRIRVAVRRPELAGHLQPLGRVGQIHAVQA
CCCCCEEEEEECCCCCHHHHHHHHHHHCCEEEEEEEECCHHHHHHHHHHCCCEEEEEEE
NLRYPESVAAAMRGSHVAINLVGILAEGGAQKFDAVQGSGAATVAQAAASVGARMVHISA
CCCCCHHHHHHHCCCEEEEEEEEEEECCCCCHHHHHCCCCHHHHHHHHHHHCCEEEEEEE
IGADANSPARYARSKAAGEQAVLAAVPQATIFRPSVVFGPEDQFTNRFAMLARMSPVLPL
ECCCCCCHHHHHHHHHCCCHHHHHHCCCCCEECCEEEECCCHHHHHHHHHHHHHCCCCEE
VGADTKLQPVYVGDVATAIADAVDDLAKPGATYELGGPEELTMREIMRIILQTTDRNPLL
ECCCCCCCEEEEHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCEE
VPLPFGLASLQAMLLQFAPGAFKLTPDQVRMLEVDNVVSEAAKSAGLTLQGLGIQPDSLQ
EECCCCHHHHHHHHHHHCCCCEEECHHHHEEHHHHHHHHHHHHHCCCEEEECCCCCCHHH
AIVPSYLWRFRKTGQFARKTA
HHHHHHHHHHHHCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NADH; H+; ubiquinone

Specific reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA