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The map label for this gene is ybaO [H]

Identifier: 192288443

GI number: 192288443

Start: 12809

End: 13318

Strand: Reverse

Name: ybaO [H]

Synonym: Rpal_0010

Alternate gene names: 192288443

Gene position: 13318-12809 (Counterclockwise)

Preceding gene: 192288444

Following gene: 192288442

Centisome position: 0.23

GC content: 61.96

Gene sequence:

>510_bases
ATGACCGACATCGACAGCGTCGTCGCCGAATCCAACCGTCGGCTTGATGCGATTGACCGCAAAATTCTGACCGTGCTGCA
GCAGGACGCCTCACTGTCCGTGGCCGAGATCGGCGATCGGGTCGGGCTGTCGTCGACCCCGTGCTGGAAGCGTATCCAGC
GGCTCGAGGCCGACGGAGTGATCATCAAGCGGGTGGCCCTGGTCGATCAGGACAAAATCGGGTTGGGGCTGTCGGTGTTC
GTCTCGATCGAGAGCGGCGATCACTCCGATGCCTGGCTGAAGACGTTTGCCGATGCCGTCAGTGCGATGCCCGAGGTGAT
CGAGTTCTACCGGATGGCCGGCGACGTCGACTACATGCTGCGGGTGGTCGTCGCGGACATGCGCGCCTACGATCAGTTCT
ACAAGAAGCTGATCGGCACCGTGCCGCTGAAGAACGTCACGTCGCGCTTTGCGATGGAGAAGATCAAGTCGGTGACGGCG
CTGCCGGTGCCGCCGATGCCGGTATCTTAA

Upstream 100 bases:

>100_bases
GTCGCAGCTCGCCTCGCGGACCGGAACCCCATGCTTGCGAGAAATTTCTTTCCATATATGATGCGTCTCGTCATCGAATT
TGGAAGAAAGTTCTCTCGTC

Downstream 100 bases:

>100_bases
TCGCCTGGGTCGTTAAGGCGGCTGTTGCTAATAGAGCCGCGTAAATTTGGACATCGACGAGCGGCTATCCAATCAGAGGC
ACTTCGGGCGACAGCCGAGG

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 168

Protein sequence:

>169_residues
MTDIDSVVAESNRRLDAIDRKILTVLQQDASLSVAEIGDRVGLSSTPCWKRIQRLEADGVIIKRVALVDQDKIGLGLSVF
VSIESGDHSDAWLKTFADAVSAMPEVIEFYRMAGDVDYMLRVVVADMRAYDQFYKKLIGTVPLKNVTSRFAMEKIKSVTA
LPVPPMPVS

Sequences:

>Translated_169_residues
MTDIDSVVAESNRRLDAIDRKILTVLQQDASLSVAEIGDRVGLSSTPCWKRIQRLEADGVIIKRVALVDQDKIGLGLSVF
VSIESGDHSDAWLKTFADAVSAMPEVIEFYRMAGDVDYMLRVVVADMRAYDQFYKKLIGTVPLKNVTSRFAMEKIKSVTA
LPVPPMPVS
>Mature_168_residues
TDIDSVVAESNRRLDAIDRKILTVLQQDASLSVAEIGDRVGLSSTPCWKRIQRLEADGVIIKRVALVDQDKIGLGLSVFV
SIESGDHSDAWLKTFADAVSAMPEVIEFYRMAGDVDYMLRVVVADMRAYDQFYKKLIGTVPLKNVTSRFAMEKIKSVTAL
PVPPMPVS

Specific function: Unknown

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=150, Percent_Identity=55.3333333333333, Blast_Score=184, Evalue=3e-48,
Organism=Escherichia coli, GI1787116, Length=148, Percent_Identity=37.1621621621622, Blast_Score=96, Evalue=2e-21,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 18705; Mature: 18574

Theoretical pI: Translated: 5.30; Mature: 5.30

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDIDSVVAESNRRLDAIDRKILTVLQQDASLSVAEIGDRVGLSSTPCWKRIQRLEADGV
CCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCH
IIKRVALVDQDKIGLGLSVFVSIESGDHSDAWLKTFADAVSAMPEVIEFYRMAGDVDYML
HHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
RVVVADMRAYDQFYKKLIGTVPLKNVTSRFAMEKIKSVTALPVPPMPVS
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TDIDSVVAESNRRLDAIDRKILTVLQQDASLSVAEIGDRVGLSSTPCWKRIQRLEADGV
CCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCH
IIKRVALVDQDKIGLGLSVFVSIESGDHSDAWLKTFADAVSAMPEVIEFYRMAGDVDYML
HHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
RVVVADMRAYDQFYKKLIGTVPLKNVTSRFAMEKIKSVTALPVPPMPVS
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]