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The map label for this gene is radA [C]

Identifier: 192288442

GI number: 192288442

Start: 10724

End: 12415

Strand: Reverse

Name: radA [C]

Synonym: Rpal_0009

Alternate gene names: 192288442

Gene position: 12415-10724 (Counterclockwise)

Preceding gene: 192288443

Following gene: 192288441

Centisome position: 0.22

GC content: 63.42

Gene sequence:

>1692_bases
ATGGCGGACGGCATATCCAAATCTCTGACGGGGATCGAAGGGTTCGACGATCTCACCCTTGGCGGCTTGCCCTCGGGGCG
CCCCAGTCTGGTGTGCGGCTCGGCCGGATGCGGCAAGACGCTGTTCGCGTCCACCTTCCTGATCAACGGTGCGCGCCTCT
ATGACGAGCCCGGCGTGTTCGTCACCTTTGAAGAACGCCCGGTCGACATCGTCGATAACGTCGCCTCGCTCGGATTCGAT
CTGCAGGGGCTGATCGCGCAGGAGCGGGTGTTGATCGAGCACATCGCAATCGATCCGACCGAGGTCGCCGAAGTCGGTGA
CTACGATCTCGAAGCACTTTTTCTCCGGCTCGAGTTTGCGGTCGACCAGATCGGCGCCAAGCGGATCGTGCTCGACACCA
TCGAGAGCCTGTTCTCGGCATTTCAGAATCCCGCCGTGCTGCGCGCCGAAATCCGGAGGCTGTTCGACTGGCTGAAGCAG
AAGGGGCTGACCGCGGTCATCACCGGCGAGCGCGGTGACGGCACGCTGACTAGGCAGGGGCTCGAAGAATACGTCTCCGA
CTGCGTCATCCTGCTCGATCACCGTGTCGACAATCAGATTTCGACCCGCCGACTGCGCATCGTCAAATATCGCGGCACTG
CGCACGGCACCAACGAATATCCGTTCCTGATCGACGAAGAGGGCTTCAGCGTTCTGCCGGTGTCTTCGCTCGGGCTGTCG
CACAAGGTGCACGAGGAGCGGATCTCGAGCGGCGTTCCCGACCTCGACGCGATGCTGTCCGGGGGCGGGTTCTACCGCGG
CACCAGCGTGCTGATCACCGGCGTCGCCGGCTCCGGCAAGAGTTCGCTGGCCTGTATGATGGTCGACGCCGCCTGCCGGC
GGGGCGAGAAGGCACTATACCTGTCATTTGAGGAATCCGAGGCGCAGACCGTCCGCAATATGAAATCGGTCGGTACCGAT
CTCGGCCGCTGGCTGAGTACCGGTCAGCTTCGCTACATCGGGGCGCGTCCGACGTTCTACAGCCTGGAAATGCATCTGGC
AGTGATGCTGCGCGAAGTCGCCCGCTTCAAGCCGGACCTCGTGGTGCTCGACCCGATCTCAGCGTTCACGGAGAGTGGGC
AGATCGGTGAAGTGCAATCGATGCTGCTGCGGATCGTCGATTATTTGAAATCCAACGGCATCACCGGCGCCTTCACGCAT
CTGGCGCACGGCGCCCAGACCGAGACCGATGCCGGCCTGTCGTCCCTGATGGACGCCTGGATCCTGCTGCTCAATCGCGA
AGCGCATGGCGAGTTCAATCGCGAGCTTTATCTCTTGAAGGCCCGTGGCATCGCGCATTCCAACCAGGTGCGCGAGTTCG
TGATGTCGGACGATGGCATCCATCTGCTGCCGCCGTATCTCGGCGAAGGCGGCGCGCTGACCGGGTCGGCGCGCAGGGCC
GAAGAAGCCAAGGAGCGCCGCGTCGAGAGCGAGCGCCGCACCGAGGTGGCGCGGCTGCAGGATCAGATCGAGCAGCGCCG
CCGGCGTGCACTCGCACAAATCGAAGCGTTGAAGGCCGATCTTGCGGTCGACGAAGCAGAGCTGCAGCGGCTGACCCAGG
CGGAAGCCAGCTTTCGCGCGCAGAGCGAGCGCGATGTCACCGAAATGGCGCGAAGACGGGGTTTCATCGGCTCGGCCGAT
GACACGGACTAG

Upstream 100 bases:

>100_bases
CCTCATTTCGTTCCCGCGTCGGACGCCAGGATTTTCGCAGGGCTTACCCTAGGCAGCGAGTTCCTGTTCTCCTACAAATC
AGAAAACGACCTGTGGTGCG

Downstream 100 bases:

>100_bases
GGGACGACGATGGCCGATCCGATCAAGCTGGTGCTGTATGTCGCCGGCGAAACGCCGAAATCGCTCGCGGCGATCCGCAA
CCTCGAGAAGATCTGTGCCG

Product: circadian clock protein KaiC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 563; Mature: 562

Protein sequence:

>563_residues
MADGISKSLTGIEGFDDLTLGGLPSGRPSLVCGSAGCGKTLFASTFLINGARLYDEPGVFVTFEERPVDIVDNVASLGFD
LQGLIAQERVLIEHIAIDPTEVAEVGDYDLEALFLRLEFAVDQIGAKRIVLDTIESLFSAFQNPAVLRAEIRRLFDWLKQ
KGLTAVITGERGDGTLTRQGLEEYVSDCVILLDHRVDNQISTRRLRIVKYRGTAHGTNEYPFLIDEEGFSVLPVSSLGLS
HKVHEERISSGVPDLDAMLSGGGFYRGTSVLITGVAGSGKSSLACMMVDAACRRGEKALYLSFEESEAQTVRNMKSVGTD
LGRWLSTGQLRYIGARPTFYSLEMHLAVMLREVARFKPDLVVLDPISAFTESGQIGEVQSMLLRIVDYLKSNGITGAFTH
LAHGAQTETDAGLSSLMDAWILLLNREAHGEFNRELYLLKARGIAHSNQVREFVMSDDGIHLLPPYLGEGGALTGSARRA
EEAKERRVESERRTEVARLQDQIEQRRRRALAQIEALKADLAVDEAELQRLTQAEASFRAQSERDVTEMARRRGFIGSAD
DTD

Sequences:

>Translated_563_residues
MADGISKSLTGIEGFDDLTLGGLPSGRPSLVCGSAGCGKTLFASTFLINGARLYDEPGVFVTFEERPVDIVDNVASLGFD
LQGLIAQERVLIEHIAIDPTEVAEVGDYDLEALFLRLEFAVDQIGAKRIVLDTIESLFSAFQNPAVLRAEIRRLFDWLKQ
KGLTAVITGERGDGTLTRQGLEEYVSDCVILLDHRVDNQISTRRLRIVKYRGTAHGTNEYPFLIDEEGFSVLPVSSLGLS
HKVHEERISSGVPDLDAMLSGGGFYRGTSVLITGVAGSGKSSLACMMVDAACRRGEKALYLSFEESEAQTVRNMKSVGTD
LGRWLSTGQLRYIGARPTFYSLEMHLAVMLREVARFKPDLVVLDPISAFTESGQIGEVQSMLLRIVDYLKSNGITGAFTH
LAHGAQTETDAGLSSLMDAWILLLNREAHGEFNRELYLLKARGIAHSNQVREFVMSDDGIHLLPPYLGEGGALTGSARRA
EEAKERRVESERRTEVARLQDQIEQRRRRALAQIEALKADLAVDEAELQRLTQAEASFRAQSERDVTEMARRRGFIGSAD
DTD
>Mature_562_residues
ADGISKSLTGIEGFDDLTLGGLPSGRPSLVCGSAGCGKTLFASTFLINGARLYDEPGVFVTFEERPVDIVDNVASLGFDL
QGLIAQERVLIEHIAIDPTEVAEVGDYDLEALFLRLEFAVDQIGAKRIVLDTIESLFSAFQNPAVLRAEIRRLFDWLKQK
GLTAVITGERGDGTLTRQGLEEYVSDCVILLDHRVDNQISTRRLRIVKYRGTAHGTNEYPFLIDEEGFSVLPVSSLGLSH
KVHEERISSGVPDLDAMLSGGGFYRGTSVLITGVAGSGKSSLACMMVDAACRRGEKALYLSFEESEAQTVRNMKSVGTDL
GRWLSTGQLRYIGARPTFYSLEMHLAVMLREVARFKPDLVVLDPISAFTESGQIGEVQSMLLRIVDYLKSNGITGAFTHL
AHGAQTETDAGLSSLMDAWILLLNREAHGEFNRELYLLKARGIAHSNQVREFVMSDDGIHLLPPYLGEGGALTGSARRAE
EAKERRVESERRTEVARLQDQIEQRRRRALAQIEALKADLAVDEAELQRLTQAEASFRAQSERDVTEMARRRGFIGSADD
TD

Specific function: May Play A Role In The Repair Of Endogenous Alkylation Damage. [C]

COG id: COG0467

COG function: function code T; RecA-superfamily ATPases implicated in signal transduction

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 kaiC domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR014774
- InterPro:   IPR010624 [H]

Pfam domain/function: PF06745 KaiC [H]

EC number: NA

Molecular weight: Translated: 61934; Mature: 61803

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: PS51146 KAIC ; PS50162 RECA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADGISKSLTGIEGFDDLTLGGLPSGRPSLVCGSAGCGKTLFASTFLINGARLYDEPGVF
CCCCHHHHHCCCCCCCCCEECCCCCCCCCEEECCCCCCHHHHHHHHHCCCCEEECCCCEE
VTFEERPVDIVDNVASLGFDLQGLIAQERVLIEHIAIDPTEVAEVGDYDLEALFLRLEFA
EEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHH
VDQIGAKRIVLDTIESLFSAFQNPAVLRAEIRRLFDWLKQKGLTAVITGERGDGTLTRQG
HHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHH
LEEYVSDCVILLDHRVDNQISTRRLRIVKYRGTAHGTNEYPFLIDEEGFSVLPVSSLGLS
HHHHHHHHHHHHHHCCCCCHHHCEEEEEEEECCCCCCCCCCEEECCCCCEEEEEHHCCCC
HKVHEERISSGVPDLDAMLSGGGFYRGTSVLITGVAGSGKSSLACMMVDAACRRGEKALY
HHHHHHHHHCCCCCHHHHHCCCCCEECCEEEEEEECCCCCCCHHHHHHHHHHHCCCCEEE
LSFEESEAQTVRNMKSVGTDLGRWLSTGQLRYIGARPTFYSLEMHLAVMLREVARFKPDL
EEECHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEHHHHHHHHHHHHHHHCCCCE
VVLDPISAFTESGQIGEVQSMLLRIVDYLKSNGITGAFTHLAHGAQTETDAGLSSLMDAW
EEECCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHH
ILLLNREAHGEFNRELYLLKARGIAHSNQVREFVMSDDGIHLLPPYLGEGGALTGSARRA
HHHHCCHHCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCEECCCCCCCCCCCCCCHHHH
EEAKERRVESERRTEVARLQDQIEQRRRRALAQIEALKADLAVDEAELQRLTQAEASFRA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
QSERDVTEMARRRGFIGSADDTD
CCCCCHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
ADGISKSLTGIEGFDDLTLGGLPSGRPSLVCGSAGCGKTLFASTFLINGARLYDEPGVF
CCCHHHHHCCCCCCCCCEECCCCCCCCCEEECCCCCCHHHHHHHHHCCCCEEECCCCEE
VTFEERPVDIVDNVASLGFDLQGLIAQERVLIEHIAIDPTEVAEVGDYDLEALFLRLEFA
EEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHH
VDQIGAKRIVLDTIESLFSAFQNPAVLRAEIRRLFDWLKQKGLTAVITGERGDGTLTRQG
HHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHH
LEEYVSDCVILLDHRVDNQISTRRLRIVKYRGTAHGTNEYPFLIDEEGFSVLPVSSLGLS
HHHHHHHHHHHHHHCCCCCHHHCEEEEEEEECCCCCCCCCCEEECCCCCEEEEEHHCCCC
HKVHEERISSGVPDLDAMLSGGGFYRGTSVLITGVAGSGKSSLACMMVDAACRRGEKALY
HHHHHHHHHCCCCCHHHHHCCCCCEECCEEEEEEECCCCCCCHHHHHHHHHHHCCCCEEE
LSFEESEAQTVRNMKSVGTDLGRWLSTGQLRYIGARPTFYSLEMHLAVMLREVARFKPDL
EEECHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEHHHHHHHHHHHHHHHCCCCE
VVLDPISAFTESGQIGEVQSMLLRIVDYLKSNGITGAFTHLAHGAQTETDAGLSSLMDAW
EEECCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHH
ILLLNREAHGEFNRELYLLKARGIAHSNQVREFVMSDDGIHLLPPYLGEGGALTGSARRA
HHHHCCHHCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCEECCCCCCCCCCCCCCHHHH
EEAKERRVESERRTEVARLQDQIEQRRRRALAQIEALKADLAVDEAELQRLTQAEASFRA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
QSERDVTEMARRRGFIGSADDTD
CCCCCHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]