Click here to switch to the map view.

The map label for this gene is ybeQ [H]

Identifier: 190895289

GI number: 190895289

Start: 1060146

End: 1062287

Strand: Reverse

Name: ybeQ [H]

Synonym: RHECIAT_PC0000962

Alternate gene names: 190895289

Gene position: 1062287-1060146 (Counterclockwise)

Preceding gene: 190895290

Following gene: 190895288

Centisome position: 97.32

GC content: 58.31

Gene sequence:

>2142_bases
ATGGTTTCCACATCTGCGCAAGGACGAGTCTTACGTTTTTTTATCTGCCTGTTCCTACTGATCGCGTGTCAAGTCTTCAC
GGGATCTGCTCACGCAGAAAGGCGTGCGGCAATTGTTATTGGCAATAGCGACTATCCTTTTGCGCCGTTGAGCAATCCCC
AGAATGACGCCAAGCTGATCGCCAGTACGCTCACCGAATTGAATTTTGACGTACTGTTGTTTTACGACCTGAAGAAAGAG
GCGGTCGGGGATCTCAAAGAGACCGTTCGGACGCATCTGGTCGGTGCCGATATTGCCGTTTTTTACTATGCCGGCCACGC
CTTGCAGGCCGCCGGCCGCAATCTCTTATTGCCGGTGGACGTCGATACCAGCTCCGCGCAACGGGTCGTTGCCGATGCAA
TCGTGCTCGACGACCTCATCGATATCGTCAAGAACGACCCCGTCGGGCTGAAGCTCTTCATTCTTGATGCATGCAGAAAC
AATCCGGCTGCCAATTTCCAGGGTCTGCATCAGGGGCTGGCAGACACTGAGGCGGGAAGTGGGCAGGTCTTGGTGGCTTA
CGCAACGAGTGCCGGTGAAGTCGCCTATGATGGCACCGGGCTGAATAGCCCCTATTCGTCGGCGCTCGCCAATGCCCTGC
AGCGACCGAACCTTGATGTTTATGATACGTTTCGCACGGTTCGCGGCGATGTCAGGCAAGCGACCGGCAATGCGCAAATA
CCTTGGATCACCGGTTCGATTGAAACGCGGTTCGTGTTCCGGCCACAGGCGGCAATCTTGGACGCGGAAGCCGTCGTTCC
CCCCGCCGAAACCTCGAGCCCGGTTAAAATTGACGAGGTGCTGTGGACCTTCATCAAGGATAGTCCGGATCCTGCCGATT
TCGAGCGCTTCGCAAAGATCTTTCCCCAAAGCGCGCACGCGGCCGAGGCGGAGGAAAAGAGTCGTGTCCAGGTTGCTGCC
CTTTCGAAACGCGGGCTCTATGTGCGCGAGAGCCTTGTCGCCTCATCCATTGCCAGCCAGGTGCCGAGCGCGGGCGAGGC
CGAGGCTAAGGAGTTCGTCTTCCAGCAATCGGGCGAGCGGGCGGTGAGCGAAACGTTCAGAATGTGGCCGAGTGTACTGC
CCGAGACGGCGAGCGGGATGCGCAGTCTTGTGACCGAATGCGATCTTTATGGTGCCGACCCGAACGATCCCCAGCGACAG
GTTCCCGGCGTCAGTAATGGTCTCGTCAATGTCCGCGACGCGTTACGGGCCTGCGCCTTTGCGCTTGCAGCAGACCAGAA
CAATCCCCGGCTGCAGTATCAGCTTGGTCGTGTTCTCGAGATCGCCGGTCGATATAATTGGGCGGAGTATTTCTATAAAG
TCGCCGGCGGCCATCAGTATAGCGCGGCTCTCGTCAACCTTGGCTATATGGCTCGCATGGGGATCGGCCGGAAGGTCGAC
TACGACCAGGCGCTCTCCTACTACATGGCGGCCGCAAAAATGGGCAACCTGCGCGCGCGCACCAACGTCGGCACGGCCTA
TATTCTTGGCCAAGGGGTCTCGAAGGCGCCGGAAGAAGGCATTCTCTGGTATCGTCTTGCCGCTTCCAGCGGGTGGGCCA
ACGCCATCACGGCGCTGGGTGACTGCTACAGGCTGGGCACGGGGGTAAAGCAGGATGCCTCGCAGGCAGTCGCACTTTAC
ACTGCGGCGGCCGATACGGGCCAGATCGACGCCATGGCAAATCTAGGCCAGGCCTATATCAGCGGAGAGGGCACCAAGAA
GGACCTTGGACGTGGCTTGGAGACCCTGCTCAAGGCAACGGACATGGGCAACAAATACGCCCCCTATTATGCCGCGAGAT
TGTACCTGAAAGGCGCCGATAAACTTCCTGCCGATCGGAATCGAGCGCTTTCCCTCTTCAAGTTATCTGCCAATCGCGGC
CTGGAACTGGCTAATCTCGATCTTGCCTTCGGTTACGACAAAGGCAGCTTCACGGGAAAGGCGGATGTGCCGCTCGCCTA
TTATTATGGGGTGCTGGCCGAAAAGCTGGGCGTCAATCGAGCCGATGAAGCGCGCGCGGCGATCGGCAAGAAGCTCGACG
CGGCAACACGGCAGAAGATCGAAGCCCAGGTCGATCTCTTTCTGGAACAGAACGGCAAATGA

Upstream 100 bases:

>100_bases
ATCCACTTCAAATTCTCAATTGTGGGAATGAGGCAGACAAGGCGACGTTCGGGCTTTGCTCCGATGGTTTCGGGCGCGGT
CTTGTCATGGAGCGATAGTG

Downstream 100 bases:

>100_bases
CGTTTCGGAGGTGACCTGAAAGGGGTATCGGCATGGGGATAGCGTATCGCTCGATATCGGATCTGCACAGAACGATTGTC
GACGGGTTGCACATGCTGCC

Product: putative peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 713; Mature: 713

Protein sequence:

>713_residues
MVSTSAQGRVLRFFICLFLLIACQVFTGSAHAERRAAIVIGNSDYPFAPLSNPQNDAKLIASTLTELNFDVLLFYDLKKE
AVGDLKETVRTHLVGADIAVFYYAGHALQAAGRNLLLPVDVDTSSAQRVVADAIVLDDLIDIVKNDPVGLKLFILDACRN
NPAANFQGLHQGLADTEAGSGQVLVAYATSAGEVAYDGTGLNSPYSSALANALQRPNLDVYDTFRTVRGDVRQATGNAQI
PWITGSIETRFVFRPQAAILDAEAVVPPAETSSPVKIDEVLWTFIKDSPDPADFERFAKIFPQSAHAAEAEEKSRVQVAA
LSKRGLYVRESLVASSIASQVPSAGEAEAKEFVFQQSGERAVSETFRMWPSVLPETASGMRSLVTECDLYGADPNDPQRQ
VPGVSNGLVNVRDALRACAFALAADQNNPRLQYQLGRVLEIAGRYNWAEYFYKVAGGHQYSAALVNLGYMARMGIGRKVD
YDQALSYYMAAAKMGNLRARTNVGTAYILGQGVSKAPEEGILWYRLAASSGWANAITALGDCYRLGTGVKQDASQAVALY
TAAADTGQIDAMANLGQAYISGEGTKKDLGRGLETLLKATDMGNKYAPYYAARLYLKGADKLPADRNRALSLFKLSANRG
LELANLDLAFGYDKGSFTGKADVPLAYYYGVLAEKLGVNRADEARAAIGKKLDAATRQKIEAQVDLFLEQNGK

Sequences:

>Translated_713_residues
MVSTSAQGRVLRFFICLFLLIACQVFTGSAHAERRAAIVIGNSDYPFAPLSNPQNDAKLIASTLTELNFDVLLFYDLKKE
AVGDLKETVRTHLVGADIAVFYYAGHALQAAGRNLLLPVDVDTSSAQRVVADAIVLDDLIDIVKNDPVGLKLFILDACRN
NPAANFQGLHQGLADTEAGSGQVLVAYATSAGEVAYDGTGLNSPYSSALANALQRPNLDVYDTFRTVRGDVRQATGNAQI
PWITGSIETRFVFRPQAAILDAEAVVPPAETSSPVKIDEVLWTFIKDSPDPADFERFAKIFPQSAHAAEAEEKSRVQVAA
LSKRGLYVRESLVASSIASQVPSAGEAEAKEFVFQQSGERAVSETFRMWPSVLPETASGMRSLVTECDLYGADPNDPQRQ
VPGVSNGLVNVRDALRACAFALAADQNNPRLQYQLGRVLEIAGRYNWAEYFYKVAGGHQYSAALVNLGYMARMGIGRKVD
YDQALSYYMAAAKMGNLRARTNVGTAYILGQGVSKAPEEGILWYRLAASSGWANAITALGDCYRLGTGVKQDASQAVALY
TAAADTGQIDAMANLGQAYISGEGTKKDLGRGLETLLKATDMGNKYAPYYAARLYLKGADKLPADRNRALSLFKLSANRG
LELANLDLAFGYDKGSFTGKADVPLAYYYGVLAEKLGVNRADEARAAIGKKLDAATRQKIEAQVDLFLEQNGK
>Mature_713_residues
MVSTSAQGRVLRFFICLFLLIACQVFTGSAHAERRAAIVIGNSDYPFAPLSNPQNDAKLIASTLTELNFDVLLFYDLKKE
AVGDLKETVRTHLVGADIAVFYYAGHALQAAGRNLLLPVDVDTSSAQRVVADAIVLDDLIDIVKNDPVGLKLFILDACRN
NPAANFQGLHQGLADTEAGSGQVLVAYATSAGEVAYDGTGLNSPYSSALANALQRPNLDVYDTFRTVRGDVRQATGNAQI
PWITGSIETRFVFRPQAAILDAEAVVPPAETSSPVKIDEVLWTFIKDSPDPADFERFAKIFPQSAHAAEAEEKSRVQVAA
LSKRGLYVRESLVASSIASQVPSAGEAEAKEFVFQQSGERAVSETFRMWPSVLPETASGMRSLVTECDLYGADPNDPQRQ
VPGVSNGLVNVRDALRACAFALAADQNNPRLQYQLGRVLEIAGRYNWAEYFYKVAGGHQYSAALVNLGYMARMGIGRKVD
YDQALSYYMAAAKMGNLRARTNVGTAYILGQGVSKAPEEGILWYRLAASSGWANAITALGDCYRLGTGVKQDASQAVALY
TAAADTGQIDAMANLGQAYISGEGTKKDLGRGLETLLKATDMGNKYAPYYAARLYLKGADKLPADRNRALSLFKLSANRG
LELANLDLAFGYDKGSFTGKADVPLAYYYGVLAEKLGVNRADEARAAIGKKLDAATRQKIEAQVDLFLEQNGK

Specific function: Unknown

COG id: COG4249

COG function: function code R; Uncharacterized protein containing caspase domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ybeT [H]

Homologues:

Organism=Homo sapiens, GI19923669, Length=259, Percent_Identity=27.7992277992278, Blast_Score=82, Evalue=2e-15,
Organism=Escherichia coli, GI87081769, Length=190, Percent_Identity=33.1578947368421, Blast_Score=89, Evalue=9e-19,
Organism=Drosophila melanogaster, GI21355295, Length=260, Percent_Identity=25.7692307692308, Blast_Score=73, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006597
- InterPro:   IPR011990 [H]

Pfam domain/function: PF08238 Sel1 [H]

EC number: NA

Molecular weight: Translated: 76915; Mature: 76915

Theoretical pI: Translated: 5.84; Mature: 5.84

Prosite motif: PS00639 THIOL_PROTEASE_HIS ; PS50208 CASPASE_P20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSTSAQGRVLRFFICLFLLIACQVFTGSAHAERRAAIVIGNSDYPFAPLSNPQNDAKLI
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHH
ASTLTELNFDVLLFYDLKKEAVGDLKETVRTHLVGADIAVFYYAGHALQAAGRNLLLPVD
HHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHCCCCEEEEEC
VDTSSAQRVVADAIVLDDLIDIVKNDPVGLKLFILDACRNNPAANFQGLHQGLADTEAGS
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHCCCCCCCCC
GQVLVAYATSAGEVAYDGTGLNSPYSSALANALQRPNLDVYDTFRTVRGDVRQATGNAQI
CCEEEEEECCCCCEEECCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCC
PWITGSIETRFVFRPQAAILDAEAVVPPAETSSPVKIDEVLWTFIKDSPDPADFERFAKI
CEEECCCCEEEEECCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHH
FPQSAHAAEAEEKSRVQVAALSKRGLYVRESLVASSIASQVPSAGEAEAKEFVFQQSGER
CCCCCCCCCHHHHCCEEEEEHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCH
AVSETFRMWPSVLPETASGMRSLVTECDLYGADPNDPQRQVPGVSNGLVNVRDALRACAF
HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHH
ALAADQNNPRLQYQLGRVLEIAGRYNWAEYFYKVAGGHQYSAALVNLGYMARMGIGRKVD
HHHCCCCCCEEHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCC
YDQALSYYMAAAKMGNLRARTNVGTAYILGQGVSKAPEEGILWYRLAASSGWANAITALG
HHHHHHHHHHHHHHCCCEEECCCCEEEEEECCCCCCCCCCEEEEEEECCCCHHHHHHHHH
DCYRLGTGVKQDASQAVALYTAAADTGQIDAMANLGQAYISGEGTKKDLGRGLETLLKAT
HHHHHCCCCCHHHHCEEEEEEECCCCCCHHHHHHCCHHEECCCCCHHHHHHHHHHHHHHH
DMGNKYAPYYAARLYLKGADKLPADRNRALSLFKLSANRGLELANLDLAFGYDKGSFTGK
CCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCEEEEEEEEEECCCCCCCCC
ADVPLAYYYGVLAEKLGVNRADEARAAIGKKLDAATRQKIEAQVDLFLEQNGK
CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCC
>Mature Secondary Structure
MVSTSAQGRVLRFFICLFLLIACQVFTGSAHAERRAAIVIGNSDYPFAPLSNPQNDAKLI
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHH
ASTLTELNFDVLLFYDLKKEAVGDLKETVRTHLVGADIAVFYYAGHALQAAGRNLLLPVD
HHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHCCCCEEEEEC
VDTSSAQRVVADAIVLDDLIDIVKNDPVGLKLFILDACRNNPAANFQGLHQGLADTEAGS
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHCCCCCCCCC
GQVLVAYATSAGEVAYDGTGLNSPYSSALANALQRPNLDVYDTFRTVRGDVRQATGNAQI
CCEEEEEECCCCCEEECCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCC
PWITGSIETRFVFRPQAAILDAEAVVPPAETSSPVKIDEVLWTFIKDSPDPADFERFAKI
CEEECCCCEEEEECCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHH
FPQSAHAAEAEEKSRVQVAALSKRGLYVRESLVASSIASQVPSAGEAEAKEFVFQQSGER
CCCCCCCCCHHHHCCEEEEEHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCH
AVSETFRMWPSVLPETASGMRSLVTECDLYGADPNDPQRQVPGVSNGLVNVRDALRACAF
HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHH
ALAADQNNPRLQYQLGRVLEIAGRYNWAEYFYKVAGGHQYSAALVNLGYMARMGIGRKVD
HHHCCCCCCEEHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCC
YDQALSYYMAAAKMGNLRARTNVGTAYILGQGVSKAPEEGILWYRLAASSGWANAITALG
HHHHHHHHHHHHHHCCCEEECCCCEEEEEECCCCCCCCCCEEEEEEECCCCHHHHHHHHH
DCYRLGTGVKQDASQAVALYTAAADTGQIDAMANLGQAYISGEGTKKDLGRGLETLLKAT
HHHHHCCCCCHHHHCEEEEEEECCCCCCHHHHHHCCHHEECCCCCHHHHHHHHHHHHHHH
DMGNKYAPYYAARLYLKGADKLPADRNRALSLFKLSANRGLELANLDLAFGYDKGSFTGK
CCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCEEEEEEEEEECCCCCCCCC
ADVPLAYYYGVLAEKLGVNRADEARAAIGKKLDAATRQKIEAQVDLFLEQNGK
CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]