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The map label for this gene is rhaS [C]

Identifier: 190895206

GI number: 190895206

Start: 971285

End: 972172

Strand: Reverse

Name: rhaS [C]

Synonym: RHECIAT_PC0000879

Alternate gene names: 190895206

Gene position: 972172-971285 (Counterclockwise)

Preceding gene: 190895209

Following gene: 190895205

Centisome position: 89.07

GC content: 58.78

Gene sequence:

>888_bases
GTGGGGATCGTTCCAGCTATTCAACCCGAAAGAATGAAAAGGTCACAAGGCGAGATCATCCTTCACAAACAAGGCCTGTG
GAGTAACGCCCGCGCTGATGTCGTTCGCCGCCGCGGCCTCGGGCGACAGACTATCGACGTTCTCGCGGACGACGACCACC
TAATCTTCTTGAACATACGGGGTGCCGCGAAATCCGGCGAAAACTACCTCAATGGGCGTAAAGTCGAATTCGCTCCGCGT
CCCGACGGCTCGCTCGTTTACGTTCCGCCTGGCTGCCGTTGGAGCGGTTGGGATGAAGGAGATGCCGAGGGCTGCTATCT
CATGATAACGATAGCGCGGGAGTTTTTCGCCAGCCTCTCCGCGAGGCTGCCGGCTGCAGGCACCTTGCGCCCGGAACTCG
GTTTTAAAGATCTGCCGATCCAATGCCTGGCGCGGCAGATTGCGCGCGAACTTTCGAATGAAGATTCCATAAGGGATCTG
ATCGTTGAAGGGCACCTGGTCGCGATCTTTGGACTTCTGCAGCGCCGCTCTCACACATCCGGCAGGGTGTCTCGAGGAGG
ACTGTCACCCAGGGTCCTCAAGAGGGCGATCGACCGAATTGAGGCCTATATCGATCGACCCCCGAGCGTGCGAGTGCTGG
CTCAAGAAGCGGGGATGACCTACGAACATTTCTCCCGTGCCTTCAAGCAGTCACAAGGCTCGACACCCTATGGCTTCTAT
AACCAGCGCCGCCTCGAACGGGCGTGCGACTATCTCCGCTCGACGACGATGAGCGTGACAGAGGTGGCGATCAGCTGTGG
CTACTCCAGCGGCAGTCACCTCTCGACCAGATTTCGCCGTGAGACGGGGTTTTCACCCCAGGAGTATCGGGCTCTCTGGA
GGGAATAG

Upstream 100 bases:

>100_bases
GACACAAAATTCGACCTGAAGTTAAAGGAGGTTGGATCGGCAACCTGGGGTGAGATACGCTTGCACCTAGGCCGTTGTTT
TGTGGGGGGCAGCCATCCGA

Downstream 100 bases:

>100_bases
CCCGGCTCCGAGCTAGAAATAATATCAAATTCATGAAAGCCGCCGCCCACCGAGACGAATAGCATGTCCTCACGAACCTG
ACAGGGGGCTGACGGAATGG

Product: putative AraC family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; AraC-Family Transcriptional Regulator; Transcriptional Regulator AraC Family Protein; AraC Family Transcription Regulator; Transcriptional Regulator Protein; Transcriptional Regulator AraC; Transcription Regulator AraC Family; Helix-Turn-Helix- Domain Containing Protein; Transcriptional Regulator Protein AraC Family; Helix-Turn-Helix Protein; L-Rhamnose Operon Transcriptional Activator; AraC Family Two Component Transcriptional Regulator; Two Component System Response Regulator; Transcriptional Regulator AraC-Type; AraC Family Regulatory Helix-Turn-Helix Protein; Regulator; AraC Family Regulatory Protein; Transcriptional Regulatory Protein; HTH-Type Transcriptional Regulator ChbR; Transcription Regulator Protein; AraC Type Helix-Turn-Helix- Domain-Containing Protein; Helix-Turn-Helix AraC Type; AraC-Type Trancriptional Regulator; Arac Family Transcriptional Regulator; AraC Family Helix-Turn-Helix Transcriptional Regulator; AraC Family Regulatory Helix-Turn-Helix; AraC Family Transcription Regulator Protein

Number of amino acids: Translated: 295; Mature: 294

Protein sequence:

>295_residues
MGIVPAIQPERMKRSQGEIILHKQGLWSNARADVVRRRGLGRQTIDVLADDDHLIFLNIRGAAKSGENYLNGRKVEFAPR
PDGSLVYVPPGCRWSGWDEGDAEGCYLMITIAREFFASLSARLPAAGTLRPELGFKDLPIQCLARQIARELSNEDSIRDL
IVEGHLVAIFGLLQRRSHTSGRVSRGGLSPRVLKRAIDRIEAYIDRPPSVRVLAQEAGMTYEHFSRAFKQSQGSTPYGFY
NQRRLERACDYLRSTTMSVTEVAISCGYSSGSHLSTRFRRETGFSPQEYRALWRE

Sequences:

>Translated_295_residues
MGIVPAIQPERMKRSQGEIILHKQGLWSNARADVVRRRGLGRQTIDVLADDDHLIFLNIRGAAKSGENYLNGRKVEFAPR
PDGSLVYVPPGCRWSGWDEGDAEGCYLMITIAREFFASLSARLPAAGTLRPELGFKDLPIQCLARQIARELSNEDSIRDL
IVEGHLVAIFGLLQRRSHTSGRVSRGGLSPRVLKRAIDRIEAYIDRPPSVRVLAQEAGMTYEHFSRAFKQSQGSTPYGFY
NQRRLERACDYLRSTTMSVTEVAISCGYSSGSHLSTRFRRETGFSPQEYRALWRE
>Mature_294_residues
GIVPAIQPERMKRSQGEIILHKQGLWSNARADVVRRRGLGRQTIDVLADDDHLIFLNIRGAAKSGENYLNGRKVEFAPRP
DGSLVYVPPGCRWSGWDEGDAEGCYLMITIAREFFASLSARLPAAGTLRPELGFKDLPIQCLARQIARELSNEDSIRDLI
VEGHLVAIFGLLQRRSHTSGRVSRGGLSPRVLKRAIDRIEAYIDRPPSVRVLAQEAGMTYEHFSRAFKQSQGSTPYGFYN
QRRLERACDYLRSTTMSVTEVAISCGYSSGSHLSTRFRRETGFSPQEYRALWRE

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790339, Length=78, Percent_Identity=38.4615384615385, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33232; Mature: 33101

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIVPAIQPERMKRSQGEIILHKQGLWSNARADVVRRRGLGRQTIDVLADDDHLIFLNIR
CCCCCCCCHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCHHHEEECCCCEEEEEEC
GAAKSGENYLNGRKVEFAPRPDGSLVYVPPGCRWSGWDEGDAEGCYLMITIAREFFASLS
CCCCCCCHHCCCCEEEECCCCCCCEEEECCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHH
ARLPAAGTLRPELGFKDLPIQCLARQIARELSNEDSIRDLIVEGHLVAIFGLLQRRSHTS
HCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHCCCC
GRVSRGGLSPRVLKRAIDRIEAYIDRPPSVRVLAQEAGMTYEHFSRAFKQSQGSTPYGFY
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEHHHHCCCHHHHHHHHHHCCCCCCCCHH
NQRRLERACDYLRSTTMSVTEVAISCGYSSGSHLSTRFRRETGFSPQEYRALWRE
HHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHCC
>Mature Secondary Structure 
GIVPAIQPERMKRSQGEIILHKQGLWSNARADVVRRRGLGRQTIDVLADDDHLIFLNIR
CCCCCCCHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCHHHEEECCCCEEEEEEC
GAAKSGENYLNGRKVEFAPRPDGSLVYVPPGCRWSGWDEGDAEGCYLMITIAREFFASLS
CCCCCCCHHCCCCEEEECCCCCCCEEEECCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHH
ARLPAAGTLRPELGFKDLPIQCLARQIARELSNEDSIRDLIVEGHLVAIFGLLQRRSHTS
HCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHCCCC
GRVSRGGLSPRVLKRAIDRIEAYIDRPPSVRVLAQEAGMTYEHFSRAFKQSQGSTPYGFY
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEHHHHCCCHHHHHHHHHHCCCCCCCCHH
NQRRLERACDYLRSTTMSVTEVAISCGYSSGSHLSTRFRRETGFSPQEYRALWRE
HHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA