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The map label for this gene is nocRc [H]

Identifier: 190895198

GI number: 190895198

Start: 962900

End: 963841

Strand: Reverse

Name: nocRc [H]

Synonym: RHECIAT_PC0000871

Alternate gene names: 190895198

Gene position: 963841-962900 (Counterclockwise)

Preceding gene: 190895203

Following gene: 190895195

Centisome position: 88.3

GC content: 53.5

Gene sequence:

>942_bases
GTGCTCGACGACACTAAGGGATCTTTGGTCATGGATATCACTGGCTCCGGAGTGAGGATTCGCCAGCTTCAAATCTTGCG
CGAGGTCATGCGTGCCGGCTCGGAAAGGCTTGCAGCACAGGTGCTGCGGATAACACAGCCGGCGGTCAGCCAAAACGTCA
AGCAGCTTGAGGAGGCGCTCGGTTTCGCGCTCTTCCGCCGTGAGAACAACAGACTGATTCCGACGGCCAAGGCATGGGAA
TTTCTGCGCACGATCGATGCGGCTTTTGCGGGACTTGATCGAATTGGACCGTCAATCGAATTTCTGCGGAACAACGATAC
CCGTCTGATCGGCATCGCGGCTCCAAGCGCCTTTTCATTCGTAACCTTGCCGAGGGTCGTCAAAAGGATCCGCGAGAAAA
GCCGTTCTTATACTGTTCAGGTAAAAACAGGCACATATCAACAGATCGCAGAGCATGTATTAAACGGCCGCGTGGATCTT
GGCATCTCGCGATTGCCGATTGACGAACGCATCCTTGATTGGATGCCGATTGGCTCGGCCACGAACGTGTGTCTCTTCCC
GGAGAATCACCGATTTGCAATGCAGGAGATGGTTACCGCCGAAGATCTTATCGGTGAGGCCATCATCGACATCGACCCCC
AGTTCGCGTCTCATCAAATGAGCGTCAATGCGCTTCGATATCTTGGAGCCGCACCCGAGATTGTAGTGGAATATGACTCC
AACGGCCATGATATCGGATTTGTCACGGCCGGGATCGGCGTCTCGATTACGAATGAGATTGTTGCGAAGGAATATGCCAA
TTTCGGCATCGAGTTCCGACGGTTCCTTCCAGGGGCGGTATATCACTATGTTGTCGTCTGGCAAAAAGATCGAAAGCTAA
GTGATAGCCTTAGATTTGCAGCGGAACAGCTGGCCATGGGCCCGACGGATCAAGCTGCTTGA

Upstream 100 bases:

>100_bases
TCGCGATTAGGGCCAACTTGATCCAAAAATATACTTTGACTTGACGCCGTCAATTTATAAGATACGAGAACTTTCGATAA
GCAGGGCTTATCAGTCTGAG

Downstream 100 bases:

>100_bases
TGGATCGCAATCGAGACGCGGTCATTAAGCCTTTGGTCTGGTTGTCTTCTTCATCGTCATTGCACTCACCAAACCCGCTC
ATGTAAAATCGCATCGAAAA

Product: LysR family nopaline catabolism transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MLDDTKGSLVMDITGSGVRIRQLQILREVMRAGSERLAAQVLRITQPAVSQNVKQLEEALGFALFRRENNRLIPTAKAWE
FLRTIDAAFAGLDRIGPSIEFLRNNDTRLIGIAAPSAFSFVTLPRVVKRIREKSRSYTVQVKTGTYQQIAEHVLNGRVDL
GISRLPIDERILDWMPIGSATNVCLFPENHRFAMQEMVTAEDLIGEAIIDIDPQFASHQMSVNALRYLGAAPEIVVEYDS
NGHDIGFVTAGIGVSITNEIVAKEYANFGIEFRRFLPGAVYHYVVVWQKDRKLSDSLRFAAEQLAMGPTDQAA

Sequences:

>Translated_313_residues
MLDDTKGSLVMDITGSGVRIRQLQILREVMRAGSERLAAQVLRITQPAVSQNVKQLEEALGFALFRRENNRLIPTAKAWE
FLRTIDAAFAGLDRIGPSIEFLRNNDTRLIGIAAPSAFSFVTLPRVVKRIREKSRSYTVQVKTGTYQQIAEHVLNGRVDL
GISRLPIDERILDWMPIGSATNVCLFPENHRFAMQEMVTAEDLIGEAIIDIDPQFASHQMSVNALRYLGAAPEIVVEYDS
NGHDIGFVTAGIGVSITNEIVAKEYANFGIEFRRFLPGAVYHYVVVWQKDRKLSDSLRFAAEQLAMGPTDQAA
>Mature_313_residues
MLDDTKGSLVMDITGSGVRIRQLQILREVMRAGSERLAAQVLRITQPAVSQNVKQLEEALGFALFRRENNRLIPTAKAWE
FLRTIDAAFAGLDRIGPSIEFLRNNDTRLIGIAAPSAFSFVTLPRVVKRIREKSRSYTVQVKTGTYQQIAEHVLNGRVDL
GISRLPIDERILDWMPIGSATNVCLFPENHRFAMQEMVTAEDLIGEAIIDIDPQFASHQMSVNALRYLGAAPEIVVEYDS
NGHDIGFVTAGIGVSITNEIVAKEYANFGIEFRRFLPGAVYHYVVVWQKDRKLSDSLRFAAEQLAMGPTDQAA

Specific function: Positive regulatory protein for the noc operon involved in nopaline catabolism and uptake [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789204, Length=260, Percent_Identity=27.3076923076923, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI157672245, Length=224, Percent_Identity=24.5535714285714, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1787879, Length=269, Percent_Identity=24.907063197026, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788481, Length=144, Percent_Identity=31.9444444444444, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34921; Mature: 34921

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDDTKGSLVMDITGSGVRIRQLQILREVMRAGSERLAAQVLRITQPAVSQNVKQLEEAL
CCCCCCCCEEEEECCCCEEHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHH
GFALFRRENNRLIPTAKAWEFLRTIDAAFAGLDRIGPSIEFLRNNDTRLIGIAAPSAFSF
HHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEECCCCHHH
VTLPRVVKRIREKSRSYTVQVKTGTYQQIAEHVLNGRVDLGISRLPIDERILDWMPIGSA
HHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCEECCEECCCHHHHHHHHCCCCCC
TNVCLFPENHRFAMQEMVTAEDLIGEAIIDIDPQFASHQMSVNALRYLGAAPEIVVEYDS
CCEEECCCCCHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHCCCCEEEEEECC
NGHDIGFVTAGIGVSITNEIVAKEYANFGIEFRRFLPGAVYHYVVVWQKDRKLSDSLRFA
CCCEEEEEEECCCCHHHHHHHHHHHHHCCHHHHHHCCCCCEEEEEEEECCCCHHHHHHHH
AEQLAMGPTDQAA
HHHHCCCCCCCCC
>Mature Secondary Structure
MLDDTKGSLVMDITGSGVRIRQLQILREVMRAGSERLAAQVLRITQPAVSQNVKQLEEAL
CCCCCCCCEEEEECCCCEEHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHH
GFALFRRENNRLIPTAKAWEFLRTIDAAFAGLDRIGPSIEFLRNNDTRLIGIAAPSAFSF
HHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEECCCCHHH
VTLPRVVKRIREKSRSYTVQVKTGTYQQIAEHVLNGRVDLGISRLPIDERILDWMPIGSA
HHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCEECCEECCCHHHHHHHHCCCCCC
TNVCLFPENHRFAMQEMVTAEDLIGEAIIDIDPQFASHQMSVNALRYLGAAPEIVVEYDS
CCEEECCCCCHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHCCCCEEEEEECC
NGHDIGFVTAGIGVSITNEIVAKEYANFGIEFRRFLPGAVYHYVVVWQKDRKLSDSLRFA
CCCEEEEEEECCCCHHHHHHHHHHHHHCCHHHHHHCCCCCEEEEEEEECCCCHHHHHHHH
AEQLAMGPTDQAA
HHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1799698; 11743193; 11743194 [H]