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The map label for this gene is yckA [H]

Identifier: 190895141

GI number: 190895141

Start: 872827

End: 873477

Strand: Reverse

Name: yckA [H]

Synonym: RHECIAT_PC0000811

Alternate gene names: 190895141

Gene position: 873477-872827 (Counterclockwise)

Preceding gene: 190895142

Following gene: 190895140

Centisome position: 80.02

GC content: 57.76

Gene sequence:

>651_bases
ATGGTCAGAGAAATTTCCGTAAATGACCTTTGGATGCTCATGGAAGGGCTGAAGTGGACGGTTCTTCTTTCGGCTATTGC
GTTTGCAGGCGGCGGCATAGTCGGTGTGATGATCGCTCTGATGCGAACCAGTCCCTACGCGCTTCCACGCTGGTTCGCAT
ATTTGTACATCGAGGTGTTCCAGGGAACGCCGCTCCTGATGCAACTCTTCGTGTTCTATTATGGCGTTGCTTTGGTCGGA
CTCGACGTCAGCGCATGGATCGCTGCCGCGATCGGACTGACCGCCCACAGCAGTGCGTTTCTCGGCGAAATCTGGCGGGG
AGGCATCGAGGCAGTGCCGCTTGGCCAGACCGAAGCGGCGCGAGCCCTCGGCCTGCCGTACCGCCACCGCATGCTCGACG
TGGTTTTGCCCCAGGCATTTAAGATCTCGCTTCCTGCGACGATCGGCTTCCTCGTCGGACTCGTTAAGGGAACCTCGCTC
GTCGCGATCATCGGCTTTACCGAACTCACCCGCGCCGGGCAGATCATATCGAATAACACTTTCCAGCCGTTGATCGTCTT
CGGAATGGTCGGCGCGATCTATTTCGCGCTGTGCTGGCCACTTTCCCTCCTGAGCGGACATCTCGAAAAGAGGATGTCGT
TCGGCAGGTAA

Upstream 100 bases:

>100_bases
CGTCACAGGAATCTACCTGGCATTGTCCATCTGCATCTCGTCGTTCCTTCGGCTCTTTGGCCGGTTCTACTTCTCCTATC
CGACTAAATGAGGTCAGACC

Downstream 100 bases:

>100_bases
ACAGATCAGCGAATTCGGCACGCTGGCGGAAAACGAAATGCCGATCAAAACCAACAGAGGTGAACACAAATGTTTAACAA
GAAGAGCGCTCTCGGACGTC

Product: putative amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MVREISVNDLWMLMEGLKWTVLLSAIAFAGGGIVGVMIALMRTSPYALPRWFAYLYIEVFQGTPLLMQLFVFYYGVALVG
LDVSAWIAAAIGLTAHSSAFLGEIWRGGIEAVPLGQTEAARALGLPYRHRMLDVVLPQAFKISLPATIGFLVGLVKGTSL
VAIIGFTELTRAGQIISNNTFQPLIVFGMVGAIYFALCWPLSLLSGHLEKRMSFGR

Sequences:

>Translated_216_residues
MVREISVNDLWMLMEGLKWTVLLSAIAFAGGGIVGVMIALMRTSPYALPRWFAYLYIEVFQGTPLLMQLFVFYYGVALVG
LDVSAWIAAAIGLTAHSSAFLGEIWRGGIEAVPLGQTEAARALGLPYRHRMLDVVLPQAFKISLPATIGFLVGLVKGTSL
VAIIGFTELTRAGQIISNNTFQPLIVFGMVGAIYFALCWPLSLLSGHLEKRMSFGR
>Mature_216_residues
MVREISVNDLWMLMEGLKWTVLLSAIAFAGGGIVGVMIALMRTSPYALPRWFAYLYIEVFQGTPLLMQLFVFYYGVALVG
LDVSAWIAAAIGLTAHSSAFLGEIWRGGIEAVPLGQTEAARALGLPYRHRMLDVVLPQAFKISLPATIGFLVGLVKGTSL
VAIIGFTELTRAGQIISNNTFQPLIVFGMVGAIYFALCWPLSLLSGHLEKRMSFGR

Specific function: Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=210, Percent_Identity=34.7619047619048, Blast_Score=129, Evalue=1e-31,
Organism=Escherichia coli, GI87082239, Length=207, Percent_Identity=34.2995169082126, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1787030, Length=204, Percent_Identity=32.843137254902, Blast_Score=100, Evalue=5e-23,
Organism=Escherichia coli, GI1786873, Length=210, Percent_Identity=32.8571428571429, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787086, Length=215, Percent_Identity=31.1627906976744, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI1788645, Length=203, Percent_Identity=29.5566502463054, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI48994930, Length=128, Percent_Identity=35.9375, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1786874, Length=177, Percent_Identity=25.4237288135593, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787087, Length=134, Percent_Identity=30.5970149253731, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788646, Length=171, Percent_Identity=26.3157894736842, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 23543; Mature: 23543

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVREISVNDLWMLMEGLKWTVLLSAIAFAGGGIVGVMIALMRTSPYALPRWFAYLYIEVF
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH
QGTPLLMQLFVFYYGVALVGLDVSAWIAAAIGLTAHSSAFLGEIWRGGIEAVPLGQTEAA
CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHH
RALGLPYRHRMLDVVLPQAFKISLPATIGFLVGLVKGTSLVAIIGFTELTRAGQIISNNT
HHHCCCHHHHHHHHHCCCHHEEECHHHHHHHHHHHCCCCEEEEHHHHHHHHHCHHHCCCC
FQPLIVFGMVGAIYFALCWPLSLLSGHLEKRMSFGR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MVREISVNDLWMLMEGLKWTVLLSAIAFAGGGIVGVMIALMRTSPYALPRWFAYLYIEVF
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH
QGTPLLMQLFVFYYGVALVGLDVSAWIAAAIGLTAHSSAFLGEIWRGGIEAVPLGQTEAA
CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHH
RALGLPYRHRMLDVVLPQAFKISLPATIGFLVGLVKGTSLVAIIGFTELTRAGQIISNNT
HHHCCCHHHHHHHHHCCCHHEEECHHHHHHHHHHHCCCCEEEEHHHHHHHHHCHHHCCCC
FQPLIVFGMVGAIYFALCWPLSLLSGHLEKRMSFGR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7704255; 8969502; 9384377 [H]