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The map label for this gene is cph2 [H]

Identifier: 190894935

GI number: 190894935

Start: 652880

End: 654766

Strand: Reverse

Name: cph2 [H]

Synonym: RHECIAT_PC0000600

Alternate gene names: 190894935

Gene position: 654766-652880 (Counterclockwise)

Preceding gene: 190894939

Following gene: 190894934

Centisome position: 59.99

GC content: 59.41

Gene sequence:

>1887_bases
GTGAATGGCATCTGGACACAATTTGGTGGCAACCTTTCCTTCGTATCCCTGGCAATGTCGCTCTGGGCGCTCTTTTCGAT
TCAGTTTCAGCGCCGATCCATCACACAGGAGAGGATCGCCTTCGGAATCATAGCCGGCGGCGCCTCTGTCGGATCCATGT
TGCTCGCCATCGAATTTCACCCCGGCATCTATATCGATCTGCGATTTTCGTCGCTCGCATTGGCCGGCATGTTCGGGGGG
CCGATCGCTGCGGCTTTTGCCGCTTCACTGGCTATCGCCTTTCGCTTTGCCGTCGGCGGAACGGCGATGGTCGACGGGAT
CGTCACGATCGCTATCACCGCTGGAATCGGTGTGGCCGGTCATCTCTTGACGCGCAAGAGATCTCCAGGTTTCACGGACG
TTGTTGTGCTGAGCCTCGCCCTCGGCGGCGCTCTGGTCGCATCCATGGCCCTGCTTCCCACTCTCGTGACCGCTCATGTA
CTTGCCGGGGCCGGTTTTCCGCTGACCGCTTTGAATTGTCTGGCCACCGTGCTGGGCGGCTTCGTCCTTTTGAAAACGCA
GCAATGGGAGCTGGAACGCAGCATTCTGGTCACGGCATTTTCGCAATCGCCCGACTATCTCTATGTGAAGGACCGAAACA
GCCGGTTCATCACCGTCAATGAAAACATGACCCGCCTCTTCCGTTTCAGAACGACGGCGGAAATGATCGGATTGTCGGAT
TTCAATCTGATGTCGCGGCCGCTCGCCGAGGAACTCTATTATCTCGAGCAGCAGGTCATAGACACCGGCGTGCCGCTGAT
CGACTCCACAGAGCATATAGAAGGCAGATTCCTGCTCGCCTCCAAGGTTCCGTTGCGCGACAAGCAGGGGCGGGTGATCG
GTCTGGCCGGCGTAACACGGGATGTGACGGAGCGCACCGCCCTGGAGCGGGAATTGCGCGAAAGCAAGAATCTGCTGTCG
CATGCGATGGCCAGCATGTCCGATGGCATCGCCATGTACGACAGCAAAGGTTTTATCCTCTTTTGCAACGATCAGTATCG
CGATGCGTTCCCGCTTTCCGGAGAGGCTCGCGTGGTCGGCGCCCATATCAGTGACATCCTGCGCCGCGTCGTCGAAACCG
GCGAACGGCAGGGTATACCGGAAGGAAATGTGGAAGAATGGATCAAGGCCGCCACAGCTTCCCTGCATAGCAACAAGGAT
GAAGAGGTTCAGCTTCACAACGGCGACTGGCGCAGCATCCGGACGCGACTTGCAGATGACGGCACGGCAATGGCCGTCGT
CTCGGACATCACGGCGACGAAGCAGGCGGAAATCGCGCTCAGGCTGTCGGCGGAACAACTGAAGAATCTGGCCGAGACCG
ACGGACTTACCGGCATCGTCAATCGCCGCGCCTTCGACGAAGTCTTCGCGCGCGAAACCGCGGGCAACGCTCGGAGAAAC
ACGCCTTTCAGTCTCCTGATGGTCGATATCGACCGTTTCAAGGCCTACAACGATACCTACGGGCATCCCGCCGGCGACCA
ATGCCTGCGCGTCGTCAGCAAATGTCTGCGCCAATCCGTCAGTCGACCGGCGGACATCGTGGCGCGCTATGGCGGAGAGG
AATTCGTGGTGTTCCTTCCCGACACCAGCGCCAAGGGTGCAATGATCGTCGCCGAGCAATTCGCGCGACGCCTCGCCCAG
GAGAATATCGTTCATTCCGGCAGCGAATTCGGACGTGTGACCGCCAGTATCGGCATATCTTGCGCGACAGGGGCAATGTT
GCGGGCCAGTCCGAACCGGTTGCTCGCTGAGGCCGATACCGCGCTCTACGAGGCCAAGACGCAAGGCCGCAACCGCATTC
TCGCGCATTTGCGCGAGAATGGCCATGCGCTGAAGGACGCCGGCTAA

Upstream 100 bases:

>100_bases
CCAGCAGCGATCGAGACGTCCGCCCTGCGGTTTAACGAAGCTCAAACCAGTATCGTCGTATGACAGGTTTCTTACGTGGT
TTGGAAGTGGATCCAAAGCA

Downstream 100 bases:

>100_bases
GCGACACCTGGGTCCCTTCCCGAGACTGCGGCCTTTAATAGGATTTTTTTATCAGACCATCGCTTGAATGGCCTTGATGT
TTGCCCGGCTTCGACAATAC

Product: putative sensory box/GGDEF family protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 628; Mature: 628

Protein sequence:

>628_residues
MNGIWTQFGGNLSFVSLAMSLWALFSIQFQRRSITQERIAFGIIAGGASVGSMLLAIEFHPGIYIDLRFSSLALAGMFGG
PIAAAFAASLAIAFRFAVGGTAMVDGIVTIAITAGIGVAGHLLTRKRSPGFTDVVVLSLALGGALVASMALLPTLVTAHV
LAGAGFPLTALNCLATVLGGFVLLKTQQWELERSILVTAFSQSPDYLYVKDRNSRFITVNENMTRLFRFRTTAEMIGLSD
FNLMSRPLAEELYYLEQQVIDTGVPLIDSTEHIEGRFLLASKVPLRDKQGRVIGLAGVTRDVTERTALERELRESKNLLS
HAMASMSDGIAMYDSKGFILFCNDQYRDAFPLSGEARVVGAHISDILRRVVETGERQGIPEGNVEEWIKAATASLHSNKD
EEVQLHNGDWRSIRTRLADDGTAMAVVSDITATKQAEIALRLSAEQLKNLAETDGLTGIVNRRAFDEVFARETAGNARRN
TPFSLLMVDIDRFKAYNDTYGHPAGDQCLRVVSKCLRQSVSRPADIVARYGGEEFVVFLPDTSAKGAMIVAEQFARRLAQ
ENIVHSGSEFGRVTASIGISCATGAMLRASPNRLLAEADTALYEAKTQGRNRILAHLRENGHALKDAG

Sequences:

>Translated_628_residues
MNGIWTQFGGNLSFVSLAMSLWALFSIQFQRRSITQERIAFGIIAGGASVGSMLLAIEFHPGIYIDLRFSSLALAGMFGG
PIAAAFAASLAIAFRFAVGGTAMVDGIVTIAITAGIGVAGHLLTRKRSPGFTDVVVLSLALGGALVASMALLPTLVTAHV
LAGAGFPLTALNCLATVLGGFVLLKTQQWELERSILVTAFSQSPDYLYVKDRNSRFITVNENMTRLFRFRTTAEMIGLSD
FNLMSRPLAEELYYLEQQVIDTGVPLIDSTEHIEGRFLLASKVPLRDKQGRVIGLAGVTRDVTERTALERELRESKNLLS
HAMASMSDGIAMYDSKGFILFCNDQYRDAFPLSGEARVVGAHISDILRRVVETGERQGIPEGNVEEWIKAATASLHSNKD
EEVQLHNGDWRSIRTRLADDGTAMAVVSDITATKQAEIALRLSAEQLKNLAETDGLTGIVNRRAFDEVFARETAGNARRN
TPFSLLMVDIDRFKAYNDTYGHPAGDQCLRVVSKCLRQSVSRPADIVARYGGEEFVVFLPDTSAKGAMIVAEQFARRLAQ
ENIVHSGSEFGRVTASIGISCATGAMLRASPNRLLAEADTALYEAKTQGRNRILAHLRENGHALKDAG
>Mature_628_residues
MNGIWTQFGGNLSFVSLAMSLWALFSIQFQRRSITQERIAFGIIAGGASVGSMLLAIEFHPGIYIDLRFSSLALAGMFGG
PIAAAFAASLAIAFRFAVGGTAMVDGIVTIAITAGIGVAGHLLTRKRSPGFTDVVVLSLALGGALVASMALLPTLVTAHV
LAGAGFPLTALNCLATVLGGFVLLKTQQWELERSILVTAFSQSPDYLYVKDRNSRFITVNENMTRLFRFRTTAEMIGLSD
FNLMSRPLAEELYYLEQQVIDTGVPLIDSTEHIEGRFLLASKVPLRDKQGRVIGLAGVTRDVTERTALERELRESKNLLS
HAMASMSDGIAMYDSKGFILFCNDQYRDAFPLSGEARVVGAHISDILRRVVETGERQGIPEGNVEEWIKAATASLHSNKD
EEVQLHNGDWRSIRTRLADDGTAMAVVSDITATKQAEIALRLSAEQLKNLAETDGLTGIVNRRAFDEVFARETAGNARRN
TPFSLLMVDIDRFKAYNDTYGHPAGDQCLRVVSKCLRQSVSRPADIVARYGGEEFVVFLPDTSAKGAMIVAEQFARRLAQ
ENIVHSGSEFGRVTASIGISCATGAMLRASPNRLLAEADTALYEAKTQGRNRILAHLRENGHALKDAG

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=217, Percent_Identity=36.405529953917, Blast_Score=123, Evalue=3e-29,
Organism=Escherichia coli, GI145693134, Length=162, Percent_Identity=40.1234567901235, Blast_Score=117, Evalue=3e-27,
Organism=Escherichia coli, GI1787262, Length=180, Percent_Identity=38.8888888888889, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI1788381, Length=360, Percent_Identity=29.1666666666667, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1786584, Length=186, Percent_Identity=34.4086021505376, Blast_Score=100, Evalue=4e-22,
Organism=Escherichia coli, GI87082007, Length=172, Percent_Identity=38.953488372093, Blast_Score=93, Evalue=6e-20,
Organism=Escherichia coli, GI1787816, Length=170, Percent_Identity=34.7058823529412, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1787802, Length=170, Percent_Identity=30.5882352941176, Blast_Score=86, Evalue=5e-18,
Organism=Escherichia coli, GI1788085, Length=184, Percent_Identity=32.6086956521739, Blast_Score=83, Evalue=6e-17,
Organism=Escherichia coli, GI1787541, Length=198, Percent_Identity=33.3333333333333, Blast_Score=82, Evalue=9e-17,
Organism=Escherichia coli, GI1787056, Length=169, Percent_Identity=29.585798816568, Blast_Score=65, Evalue=2e-11,
Organism=Escherichia coli, GI87081974, Length=106, Percent_Identity=28.3018867924528, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 68169; Mature: 68169

Theoretical pI: Translated: 7.15; Mature: 7.15

Prosite motif: PS50113 PAC ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGIWTQFGGNLSFVSLAMSLWALFSIQFQRRSITQERIAFGIIAGGASVGSMLLAIEFH
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHEEEEEECCCCCCCEEEEEEEC
PGIYIDLRFSSLALAGMFGGPIAAAFAASLAIAFRFAVGGTAMVDGIVTIAITAGIGVAG
CCEEEEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHEEEEEECCCCHHH
HLLTRKRSPGFTDVVVLSLALGGALVASMALLPTLVTAHVLAGAGFPLTALNCLATVLGG
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC
FVLLKTQQWELERSILVTAFSQSPDYLYVKDRNSRFITVNENMTRLFRFRTTAEMIGLSD
EEEEECCHHHHCCEEEEEEECCCCCEEEEEECCCEEEEECCCHHHHHHHHHHHHHHCCCC
FNLMSRPLAEELYYLEQQVIDTGVPLIDSTEHIEGRFLLASKVPLRDKQGRVIGLAGVTR
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEECCCCH
DVTERTALERELRESKNLLSHAMASMSDGIAMYDSKGFILFCNDQYRDAFPLSGEARVVG
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEECCCCCCCCCCCCCCEEEH
AHISDILRRVVETGERQGIPEGNVEEWIKAATASLHSNKDEEVQLHNGDWRSIRTRLADD
HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHCCC
GTAMAVVSDITATKQAEIALRLSAEQLKNLAETDGLTGIVNRRAFDEVFARETAGNARRN
CCEEEEEHHHHHCCCCCEEEEECHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCC
TPFSLLMVDIDRFKAYNDTYGHPAGDQCLRVVSKCLRQSVSRPADIVARYGGEEFVVFLP
CCEEEEEEEHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHCCCCEEEEEEC
DTSAKGAMIVAEQFARRLAQENIVHSGSEFGRVTASIGISCATGAMLRASPNRLLAEADT
CCCCCCHHHHHHHHHHHHHHHHHHCCCHHHCEEHHHCCCCHHCCCEEECCCCHHHHHHHH
ALYEAKTQGRNRILAHLRENGHALKDAG
HHHHHHHCCHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MNGIWTQFGGNLSFVSLAMSLWALFSIQFQRRSITQERIAFGIIAGGASVGSMLLAIEFH
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHEEEEEECCCCCCCEEEEEEEC
PGIYIDLRFSSLALAGMFGGPIAAAFAASLAIAFRFAVGGTAMVDGIVTIAITAGIGVAG
CCEEEEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHEEEEEECCCCHHH
HLLTRKRSPGFTDVVVLSLALGGALVASMALLPTLVTAHVLAGAGFPLTALNCLATVLGG
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC
FVLLKTQQWELERSILVTAFSQSPDYLYVKDRNSRFITVNENMTRLFRFRTTAEMIGLSD
EEEEECCHHHHCCEEEEEEECCCCCEEEEEECCCEEEEECCCHHHHHHHHHHHHHHCCCC
FNLMSRPLAEELYYLEQQVIDTGVPLIDSTEHIEGRFLLASKVPLRDKQGRVIGLAGVTR
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEECCCCH
DVTERTALERELRESKNLLSHAMASMSDGIAMYDSKGFILFCNDQYRDAFPLSGEARVVG
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEECCCCCCCCCCCCCCEEEH
AHISDILRRVVETGERQGIPEGNVEEWIKAATASLHSNKDEEVQLHNGDWRSIRTRLADD
HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHCCC
GTAMAVVSDITATKQAEIALRLSAEQLKNLAETDGLTGIVNRRAFDEVFARETAGNARRN
CCEEEEEHHHHHCCCCCEEEEECHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCC
TPFSLLMVDIDRFKAYNDTYGHPAGDQCLRVVSKCLRQSVSRPADIVARYGGEEFVVFLP
CCEEEEEEEHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHCCCCEEEEEEC
DTSAKGAMIVAEQFARRLAQENIVHSGSEFGRVTASIGISCATGAMLRASPNRLLAEADT
CCCCCCHHHHHHHHHHHHHHHHHHCCCHHHCEEHHHCCCCHHCCCEEECCCCHHHHHHHH
ALYEAKTQGRNRILAHLRENGHALKDAG
HHHHHHHCCHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]