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The map label for this gene is ydeP [H]

Identifier: 190894934

GI number: 190894934

Start: 650476

End: 652770

Strand: Reverse

Name: ydeP [H]

Synonym: RHECIAT_PC0000599

Alternate gene names: 190894934

Gene position: 652770-650476 (Counterclockwise)

Preceding gene: 190894935

Following gene: 190894933

Centisome position: 59.8

GC content: 62.31

Gene sequence:

>2295_bases
ATGGGCACAAAATTTATTGGGAAGAAATCGGCGGCAGCCGGAGGCTGGGGCGCTTTGAAGAGTTGCGGCAAGCAATTGCT
GCAAAGTGGAATGCCGATCTCCGGGGCGCGAACGATGCTGAAGGCGAACCAGCCGGATGGGTTCGATTGCCCGGGCTGCG
CATGGGGCGATCCGGAACACGGATCGTCGTTCGAGTTCTGTGAGAACGGGGTTAAAGCCGTCGCGTGGGAAGCGACGGAA
AAACGGGCAACGCCGGCGTTTTTCGCGAAAAGAACGGTTTCGGAGCTTCGCCAGCTTTCGGATTACGAGCTTGAGCTCAA
CGGGCGCCTTACCCATCCCATGCGCTATGATGCAACAAGCGACCGCTACCTGCCGGTGGCCTGGGAGGTTGCCTTTGCCG
AAATCGGCAGCATCCTCAAGGGCCTCGCTAATCCTGATCGCGCGGAATTCTATACGTCCGGCCGCGCCAGCAACGAGGCT
GCCTTCCTCTACCAGTTGTTCGTGCGCGTCTACGGCACCAATAACTTTCCCGATTGCTCCAACATGTGCCACGAGGCGAG
CGGCATCGCCATGCGCCAGGCGGTCGGCGTCGGCAAGGGCACGGTGCTGCTGGAGGATTTCGAAGAGGCCGACGCGATTT
TCGTGATCGGCCAGAATCCGGGCACCAATCATCCGCGAATGCTCGGCGACCTGCGGCGGGCAGCGCTTCGCGGCGCGCGC
ATCGTCGTCTTCAATCCGATCCGCGAGCGCGGCCTGGAGCGCTTTTCCGATCCGCAGGACAAGATCGAGATGCTGCGCCG
CGGCTCGACCGATATTGCCAGCCATTATCTGCAGCCGCAGCTTGGCGGCGATATGGCCGCGATCAGGGGCATGGCGAAGG
CTGTGCTGGCCGCGGAAGAGGTGGCGGCCGCAGCCGGCCTGCCGTCTGTCCTCGATCATTCCTTTCTCGCCGAGCACTGC
GCCGGTTTTGCCGAATACAAAGCGTCGGTCGAGGCGACGAGCTGGGCCGAGATCGAGGACCAGTCGGGGCTTAGCCGAGA
GGAGATTGAACGGGCGGCCGATGTCTATATCAAGGCCGAAAGGGTGATCTGCACCTGGGCGATGGGTGTGACCCAGCATC
TGCATTCGGTATCGACGATCCGCGAGATCGCCAATTTCATGTTCCTACGCGGCAATATCGGCAGGCCGGGTGCTGGCCTC
TGCCCGGTGCGCGGCCATTCCAATGTGCAGGGCGACCGAACTGTCGGTATCGACGAAAAGCCCTCGGAGGATTTCCTCGA
TGCGCTGGAGACGCATTTCCGCTTCACGGTCCCCCGGCAGCACGGCCATAATGTGCTTGCCGCGATCGGCGCGATGCTCG
ACGGCTCGGCGGCGGCCTTCATCGGGCTTGGCGGCAACTTCGCCCGCGCCACACCCGACAGTGCCCTCGTCGAGAAAGCG
CTTCGGCGGCTGAAACTGACGGTGCATATCGCGACCAAGCCGAACCATTCGCATCTGATGCCGGGCGAAACGGCCTTTAT
CCTGCCGTGTCTCGGACGGACCGAGATGGACCTCAACGCGACCGGCAATTCCCAGCTCGTGAGCGTCGAGGATTCGATGA
GCATGGTGCATGGTTCCGCCGGCATCAATCGTCCGGCCTCACCGCATCTCCTTTCGGAAGTCGCCATCATTGCCGGGATT
GCACAAGCGACGGTCGGCTCTGCCGTGGTCGACTGGGCGGAACTTGCCGAGGATTACGATCGCATCCGCGATCATATCGA
GGCGACCATTCCCGGCTTCGAGGATTATAATAAGCGCCTGCGCAAGCCGCGCGGTTTCCATCTGCGCAATGCCGCCGCCC
ATCGCAAGTGGCAGACGCCCACCGGCAAAGCGTCATTCTCCTGCCAGGCGCTTCCCGAGCAGACGGTGCATCAGCGCGCG
CGAAAAGGCGAGGGACGCTTCGCCCTGCAGACATTCCGCTCGCACGATCAGTACAATACCACGGTCTACGGCCTCGATGA
CCGCTACCGCGGCGTCTACGGAGAGCGGCAGGTCATCTTCATTCATCCGGAAGATCTGAAGGCGATCAACGCCAAGGCCG
GCGACCGCGTCGATGTCGTTGGCGAGCACGATGACGGCATCGAGCGCGTCGCGCGGGATTTCCGATTTGTCCCCTATGAC
ATTCCGCGGGGCAGCATCGCCGGCTATTATCCCGAGCTGAACGTGCTCGTGCCGCTTGGCAGCGCCGGCGAGGAAAGCGA
CACGCCGACCTCGAAATCAATCATGGTTTCCTTCCGTCGGCGAAATGCCGCGTGA

Upstream 100 bases:

>100_bases
GGGTCCCTTCCCGAGACTGCGGCCTTTAATAGGATTTTTTTATCAGACCATCGCTTGAATGGCCTTGATGTTTGCCCGGC
TTCGACAATACACGGGGAGC

Downstream 100 bases:

>100_bases
GCGAAGCGACGTCCGACGCCGACCGATTTCTCGCCCTTGTCGCTACGGCACAAGATAGGGATGCCAGGCTGACCGCGATC
CAGGCCGGTCTGCTCGTCGC

Product: putative formate dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 764; Mature: 763

Protein sequence:

>764_residues
MGTKFIGKKSAAAGGWGALKSCGKQLLQSGMPISGARTMLKANQPDGFDCPGCAWGDPEHGSSFEFCENGVKAVAWEATE
KRATPAFFAKRTVSELRQLSDYELELNGRLTHPMRYDATSDRYLPVAWEVAFAEIGSILKGLANPDRAEFYTSGRASNEA
AFLYQLFVRVYGTNNFPDCSNMCHEASGIAMRQAVGVGKGTVLLEDFEEADAIFVIGQNPGTNHPRMLGDLRRAALRGAR
IVVFNPIRERGLERFSDPQDKIEMLRRGSTDIASHYLQPQLGGDMAAIRGMAKAVLAAEEVAAAAGLPSVLDHSFLAEHC
AGFAEYKASVEATSWAEIEDQSGLSREEIERAADVYIKAERVICTWAMGVTQHLHSVSTIREIANFMFLRGNIGRPGAGL
CPVRGHSNVQGDRTVGIDEKPSEDFLDALETHFRFTVPRQHGHNVLAAIGAMLDGSAAAFIGLGGNFARATPDSALVEKA
LRRLKLTVHIATKPNHSHLMPGETAFILPCLGRTEMDLNATGNSQLVSVEDSMSMVHGSAGINRPASPHLLSEVAIIAGI
AQATVGSAVVDWAELAEDYDRIRDHIEATIPGFEDYNKRLRKPRGFHLRNAAAHRKWQTPTGKASFSCQALPEQTVHQRA
RKGEGRFALQTFRSHDQYNTTVYGLDDRYRGVYGERQVIFIHPEDLKAINAKAGDRVDVVGEHDDGIERVARDFRFVPYD
IPRGSIAGYYPELNVLVPLGSAGEESDTPTSKSIMVSFRRRNAA

Sequences:

>Translated_764_residues
MGTKFIGKKSAAAGGWGALKSCGKQLLQSGMPISGARTMLKANQPDGFDCPGCAWGDPEHGSSFEFCENGVKAVAWEATE
KRATPAFFAKRTVSELRQLSDYELELNGRLTHPMRYDATSDRYLPVAWEVAFAEIGSILKGLANPDRAEFYTSGRASNEA
AFLYQLFVRVYGTNNFPDCSNMCHEASGIAMRQAVGVGKGTVLLEDFEEADAIFVIGQNPGTNHPRMLGDLRRAALRGAR
IVVFNPIRERGLERFSDPQDKIEMLRRGSTDIASHYLQPQLGGDMAAIRGMAKAVLAAEEVAAAAGLPSVLDHSFLAEHC
AGFAEYKASVEATSWAEIEDQSGLSREEIERAADVYIKAERVICTWAMGVTQHLHSVSTIREIANFMFLRGNIGRPGAGL
CPVRGHSNVQGDRTVGIDEKPSEDFLDALETHFRFTVPRQHGHNVLAAIGAMLDGSAAAFIGLGGNFARATPDSALVEKA
LRRLKLTVHIATKPNHSHLMPGETAFILPCLGRTEMDLNATGNSQLVSVEDSMSMVHGSAGINRPASPHLLSEVAIIAGI
AQATVGSAVVDWAELAEDYDRIRDHIEATIPGFEDYNKRLRKPRGFHLRNAAAHRKWQTPTGKASFSCQALPEQTVHQRA
RKGEGRFALQTFRSHDQYNTTVYGLDDRYRGVYGERQVIFIHPEDLKAINAKAGDRVDVVGEHDDGIERVARDFRFVPYD
IPRGSIAGYYPELNVLVPLGSAGEESDTPTSKSIMVSFRRRNAA
>Mature_763_residues
GTKFIGKKSAAAGGWGALKSCGKQLLQSGMPISGARTMLKANQPDGFDCPGCAWGDPEHGSSFEFCENGVKAVAWEATEK
RATPAFFAKRTVSELRQLSDYELELNGRLTHPMRYDATSDRYLPVAWEVAFAEIGSILKGLANPDRAEFYTSGRASNEAA
FLYQLFVRVYGTNNFPDCSNMCHEASGIAMRQAVGVGKGTVLLEDFEEADAIFVIGQNPGTNHPRMLGDLRRAALRGARI
VVFNPIRERGLERFSDPQDKIEMLRRGSTDIASHYLQPQLGGDMAAIRGMAKAVLAAEEVAAAAGLPSVLDHSFLAEHCA
GFAEYKASVEATSWAEIEDQSGLSREEIERAADVYIKAERVICTWAMGVTQHLHSVSTIREIANFMFLRGNIGRPGAGLC
PVRGHSNVQGDRTVGIDEKPSEDFLDALETHFRFTVPRQHGHNVLAAIGAMLDGSAAAFIGLGGNFARATPDSALVEKAL
RRLKLTVHIATKPNHSHLMPGETAFILPCLGRTEMDLNATGNSQLVSVEDSMSMVHGSAGINRPASPHLLSEVAIIAGIA
QATVGSAVVDWAELAEDYDRIRDHIEATIPGFEDYNKRLRKPRGFHLRNAAAHRKWQTPTGKASFSCQALPEQTVHQRAR
KGEGRFALQTFRSHDQYNTTVYGLDDRYRGVYGERQVIFIHPEDLKAINAKAGDRVDVVGEHDDGIERVARDFRFVPYDI
PRGSIAGYYPELNVLVPLGSAGEESDTPTSKSIMVSFRRRNAA

Specific function: Probably involved in acid resistance [H]

COG id: COG0243

COG function: function code C; Anaerobic dehydrogenases, typically selenocysteine-containing

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]

Homologues:

Organism=Escherichia coli, GI1787778, Length=763, Percent_Identity=49.2791612057667, Blast_Score=766, Evalue=0.0,
Organism=Escherichia coli, GI3868721, Length=453, Percent_Identity=27.8145695364238, Blast_Score=156, Evalue=4e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009010
- InterPro:   IPR006657
- InterPro:   IPR006656
- InterPro:   IPR010046 [H]

Pfam domain/function: PF00384 Molybdopterin; PF01568 Molydop_binding [H]

EC number: NA

Molecular weight: Translated: 83484; Mature: 83353

Theoretical pI: Translated: 6.82; Mature: 6.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTKFIGKKSAAAGGWGALKSCGKQLLQSGMPISGARTMLKANQPDGFDCPGCAWGDPEH
CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC
GSSFEFCENGVKAVAWEATEKRATPAFFAKRTVSELRQLSDYELELNGRLTHPMRYDATS
CCCHHHHHCCCCEEEEECHHHCCCHHHHHHHHHHHHHHCCCCEEEECCEECCCEECCCCC
DRYLPVAWEVAFAEIGSILKGLANPDRAEFYTSGRASNEAAFLYQLFVRVYGTNNFPDCS
CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHEECCCCCCHHHHHHHHHHHHHCCCCCCCHH
NMCHEASGIAMRQAVGVGKGTVLLEDFEEADAIFVIGQNPGTNHPRMLGDLRRAALRGAR
HHHHHHCCHHHHHHHCCCCCEEEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCE
IVVFNPIRERGLERFSDPQDKIEMLRRGSTDIASHYLQPQLGGDMAAIRGMAKAVLAAEE
EEEECCHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
VAAAAGLPSVLDHSFLAEHCAGFAEYKASVEATSWAEIEDQSGLSREEIERAADVYIKAE
HHHHCCCHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHEEEEC
RVICTWAMGVTQHLHSVSTIREIANFMFLRGNIGRPGAGLCPVRGHSNVQGDRTVGIDEK
CEEEEHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCC
PSEDFLDALETHFRFTVPRQHGHNVLAAIGAMLDGSAAAFIGLGGNFARATPDSALVEKA
CCHHHHHHHHHHEEEECCHHCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHH
LRRLKLTVHIATKPNHSHLMPGETAFILPCLGRTEMDLNATGNSQLVSVEDSMSMVHGSA
HHHEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCEEECCCCCCEEEEEHHHHHHHHCCC
GINRPASPHLLSEVAIIAGIAQATVGSAVVDWAELAEDYDRIRDHIEATIPGFEDYNKRL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
RKPRGFHLRNAAAHRKWQTPTGKASFSCQALPEQTVHQRARKGEGRFALQTFRSHDQYNT
CCCCCCCCCCHHHHCCCCCCCCCCCEEECCCCHHHHHHHHHCCCCCCHHHHHHCCCCCCC
TVYGLDDRYRGVYGERQVIFIHPEDLKAINAKAGDRVDVVGEHDDGIERVARDFRFVPYD
EEEECCHHHCCCCCCCEEEEECCCCCHHHCCCCCCCEEEECCCCHHHHHHHHHCCCCCEE
IPRGSIAGYYPELNVLVPLGSAGEESDTPTSKSIMVSFRRRNAA
CCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHEEEHHCCCC
>Mature Secondary Structure 
GTKFIGKKSAAAGGWGALKSCGKQLLQSGMPISGARTMLKANQPDGFDCPGCAWGDPEH
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC
GSSFEFCENGVKAVAWEATEKRATPAFFAKRTVSELRQLSDYELELNGRLTHPMRYDATS
CCCHHHHHCCCCEEEEECHHHCCCHHHHHHHHHHHHHHCCCCEEEECCEECCCEECCCCC
DRYLPVAWEVAFAEIGSILKGLANPDRAEFYTSGRASNEAAFLYQLFVRVYGTNNFPDCS
CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHEECCCCCCHHHHHHHHHHHHHCCCCCCCHH
NMCHEASGIAMRQAVGVGKGTVLLEDFEEADAIFVIGQNPGTNHPRMLGDLRRAALRGAR
HHHHHHCCHHHHHHHCCCCCEEEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCE
IVVFNPIRERGLERFSDPQDKIEMLRRGSTDIASHYLQPQLGGDMAAIRGMAKAVLAAEE
EEEECCHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
VAAAAGLPSVLDHSFLAEHCAGFAEYKASVEATSWAEIEDQSGLSREEIERAADVYIKAE
HHHHCCCHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHEEEEC
RVICTWAMGVTQHLHSVSTIREIANFMFLRGNIGRPGAGLCPVRGHSNVQGDRTVGIDEK
CEEEEHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCC
PSEDFLDALETHFRFTVPRQHGHNVLAAIGAMLDGSAAAFIGLGGNFARATPDSALVEKA
CCHHHHHHHHHHEEEECCHHCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHH
LRRLKLTVHIATKPNHSHLMPGETAFILPCLGRTEMDLNATGNSQLVSVEDSMSMVHGSA
HHHEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCEEECCCCCCEEEEEHHHHHHHHCCC
GINRPASPHLLSEVAIIAGIAQATVGSAVVDWAELAEDYDRIRDHIEATIPGFEDYNKRL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
RKPRGFHLRNAAAHRKWQTPTGKASFSCQALPEQTVHQRARKGEGRFALQTFRSHDQYNT
CCCCCCCCCCHHHHCCCCCCCCCCCEEECCCCHHHHHHHHHCCCCCCHHHHHHCCCCCCC
TVYGLDDRYRGVYGERQVIFIHPEDLKAINAKAGDRVDVVGEHDDGIERVARDFRFVPYD
EEEECCHHHCCCCCCCEEEEECCCCCHHHCCCCCCCEEEECCCCHHHHHHHHHCCCCCEE
IPRGSIAGYYPELNVLVPLGSAGEESDTPTSKSIMVSFRRRNAA
CCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHEEEHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]