Click here to switch to the map view.

The map label for this gene is idnR [H]

Identifier: 190894883

GI number: 190894883

Start: 594104

End: 594973

Strand: Reverse

Name: idnR [H]

Synonym: RHECIAT_PC0000548

Alternate gene names: 190894883

Gene position: 594973-594104 (Counterclockwise)

Preceding gene: 190894895

Following gene: 190894882

Centisome position: 54.51

GC content: 63.68

Gene sequence:

>870_bases
ATGGCCGCCGTCGAGCGGTTGGGCTATGTGCCGAACCGGATCGCCGGAACGCTGGCCTCCACCGGTTCGCGTCTCGTCGC
TTTCGTCATTCCTTCGCTGTCCAACATCGTCTTTCCCGATGTGCTGCGCGGCGCCAGCGCCGTTCTGGAGGAAAACCGAT
ATCAGTCGGTTTTTTCGGTGACCGACTATGATCCGGGCAGGGAGGAAGCGCTCGCCGCCGCAATGCTCGCCTGGCGGCCG
GCCGCGGTGATGCTGGCAGGATACGAGCATACCGACGGCACGGCGAAAATGCTGCGCGCCAGCGGATGCCGGGTCGTGGA
ACTGCTCGATCTGGACGGCGACGCCCTCGATATCGCAGTCGGCTTCTCGAACCGCGCGGCCGGAAGGGAGAGCGCTGCCT
TCCTGCTCAAGCGGGCTTATCGCAGGATCGGCTATGTCGGTCACGACCTCCAGCGCGATACCCGCGCCGGCAAGCGCTTT
TCCAGTTTCTGCGAAACGCTCGAGGCCGCCGGCGCCCCGCTCATCGCCCGCGAAATTCTTGCCGGCCCATCCTCGGTGGA
GAACGGCAGATTGGGACTGGAGCGATTGCTTGCACGAGCGACCGATCTGGATGCCGTCTATTTTTCCAACGACGATATGG
CGCTGGGCGGTTATTTTCATTGTCTCGCCCAAGGGATCGCGATCCCCTCGCAGCTCGCGATTTTTGGTTATAACGGCCTC
GATATCGGCCGGGCGATACCACAGCCCTTGTCGACCATCCGGACGCCGCGCGTGGCGACCGGTGAGATAGCCGCGCAACT
CATCGTCGCCAATGCGCCGCCGCAGGTCGTCGATCTCGGCTTTGAACTGATCGAGGGGGCGACCGCATGA

Upstream 100 bases:

>100_bases
CCTCGCGGAGGTCGCGGAAGCGGCCGGCGTCGGCGAGAGCACGGTGTCGCGCGTGCTGCGCAACCATGGTTCGTTTTCAG
GCAAGACCCGGGAGCGGGTG

Downstream 100 bases:

>100_bases
ATTGGAGGAACTGTCATGTCCGACGCGCGCCTGCGTGAGGAAATCTGTCGATACGGCCGGTCGCTGTTCGAGCGCGGGCT
GACACCCGGTTCGTCGGGAA

Product: putative LacI family transcriptional regulator

Products: NA

Alternate protein names: L-idonate regulatory protein [H]

Number of amino acids: Translated: 289; Mature: 288

Protein sequence:

>289_residues
MAAVERLGYVPNRIAGTLASTGSRLVAFVIPSLSNIVFPDVLRGASAVLEENRYQSVFSVTDYDPGREEALAAAMLAWRP
AAVMLAGYEHTDGTAKMLRASGCRVVELLDLDGDALDIAVGFSNRAAGRESAAFLLKRAYRRIGYVGHDLQRDTRAGKRF
SSFCETLEAAGAPLIAREILAGPSSVENGRLGLERLLARATDLDAVYFSNDDMALGGYFHCLAQGIAIPSQLAIFGYNGL
DIGRAIPQPLSTIRTPRVATGEIAAQLIVANAPPQVVDLGFELIEGATA

Sequences:

>Translated_289_residues
MAAVERLGYVPNRIAGTLASTGSRLVAFVIPSLSNIVFPDVLRGASAVLEENRYQSVFSVTDYDPGREEALAAAMLAWRP
AAVMLAGYEHTDGTAKMLRASGCRVVELLDLDGDALDIAVGFSNRAAGRESAAFLLKRAYRRIGYVGHDLQRDTRAGKRF
SSFCETLEAAGAPLIAREILAGPSSVENGRLGLERLLARATDLDAVYFSNDDMALGGYFHCLAQGIAIPSQLAIFGYNGL
DIGRAIPQPLSTIRTPRVATGEIAAQLIVANAPPQVVDLGFELIEGATA
>Mature_288_residues
AAVERLGYVPNRIAGTLASTGSRLVAFVIPSLSNIVFPDVLRGASAVLEENRYQSVFSVTDYDPGREEALAAAMLAWRPA
AVMLAGYEHTDGTAKMLRASGCRVVELLDLDGDALDIAVGFSNRAAGRESAAFLLKRAYRRIGYVGHDLQRDTRAGKRFS
SFCETLEAAGAPLIAREILAGPSSVENGRLGLERLLARATDLDAVYFSNDDMALGGYFHCLAQGIAIPSQLAIFGYNGLD
IGRAIPQPLSTIRTPRVATGEIAAQLIVANAPPQVVDLGFELIEGATA

Specific function: Idn operon regulator. May repress gntKU and gntT genes when growing on L-idonate [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790715, Length=295, Percent_Identity=32.8813559322034, Blast_Score=176, Evalue=2e-45,
Organism=Escherichia coli, GI48994940, Length=293, Percent_Identity=34.8122866894198, Blast_Score=173, Evalue=1e-44,
Organism=Escherichia coli, GI1787948, Length=291, Percent_Identity=21.3058419243986, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790194, Length=271, Percent_Identity=21.7712177121771, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1790369, Length=291, Percent_Identity=21.3058419243986, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1788474, Length=269, Percent_Identity=23.7918215613383, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1789068, Length=257, Percent_Identity=22.9571984435798, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 30741; Mature: 30610

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAVERLGYVPNRIAGTLASTGSRLVAFVIPSLSNIVFPDVLRGASAVLEENRYQSVFSV
CCHHHHHCCCCHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE
TDYDPGREEALAAAMLAWRPAAVMLAGYEHTDGTAKMLRASGCRVVELLDLDGDALDIAV
CCCCCCHHHHHHHHHHHHCCHHEEEECCCCCCHHHHHHHHCCCCEEEEEECCCCEEEEEE
GFSNRAAGRESAAFLLKRAYRRIGYVGHDLQRDTRAGKRFSSFCETLEAAGAPLIAREIL
ECCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
AGPSSVENGRLGLERLLARATDLDAVYFSNDDMALGGYFHCLAQGIAIPSQLAIFGYNGL
CCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCEEHHHHHHHHHHHCCCCCCEEEEECCCC
DIGRAIPQPLSTIRTPRVATGEIAAQLIVANAPPQVVDLGFELIEGATA
CHHHHCCHHHHHHCCCCCCHHHHHHEEEECCCCCHHHHHHHHHHCCCCC
>Mature Secondary Structure 
AAVERLGYVPNRIAGTLASTGSRLVAFVIPSLSNIVFPDVLRGASAVLEENRYQSVFSV
CHHHHHCCCCHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE
TDYDPGREEALAAAMLAWRPAAVMLAGYEHTDGTAKMLRASGCRVVELLDLDGDALDIAV
CCCCCCHHHHHHHHHHHHCCHHEEEECCCCCCHHHHHHHHCCCCEEEEEECCCCEEEEEE
GFSNRAAGRESAAFLLKRAYRRIGYVGHDLQRDTRAGKRFSSFCETLEAAGAPLIAREIL
ECCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
AGPSSVENGRLGLERLLARATDLDAVYFSNDDMALGGYFHCLAQGIAIPSQLAIFGYNGL
CCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCEEHHHHHHHHHHHCCCCCCEEEEECCCC
DIGRAIPQPLSTIRTPRVATGEIAAQLIVANAPPQVVDLGFELIEGATA
CHHHHCCHHHHHHCCCCCCHHHHHHEEEECCCCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 9658018 [H]