| Definition | Rhizobium etli CIAT 652 plasmid pC, complete sequence. |
|---|---|
| Accession | NC_010997 |
| Length | 1,091,523 |
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The map label for this gene is oppD [H]
Identifier: 190894532
GI number: 190894532
Start: 194353
End: 195150
Strand: Reverse
Name: oppD [H]
Synonym: RHECIAT_PC0000194
Alternate gene names: 190894532
Gene position: 195150-194353 (Counterclockwise)
Preceding gene: 190894533
Following gene: 190894531
Centisome position: 17.88
GC content: 67.04
Gene sequence:
>798_bases ATGAGCGACATCTTCTGCAGTCTCAGACAGCTCTCGGTCACCTATCGGCGCGACAAAAACAATGCTGCCGCCGCTCTCGA CCGCATTGATCTCGATATCGCCGCCGGCGAAAGGCTGGCAATCATCGGTGAAAGCGGCTCCGGCAAGAGCACGCTCGCCC GGGCGCTCGCCGGTCTGCTGCCCGACGGAACGAAAGTCACCGGCGAGATGCTCTGGCCCGCCCGCGGCCACCCGCCCCGC CCGGGCCGCGATTTCGGCTTCGTCTTCCAGGATCCCGGCACGAGCCTCAATCCCGTCATGACGATCGGCGAGCAAATTGC CGAAGGCGCCAGGCGCCACCTCGGGCTCAGCTGGAAACAGGCCTATAGCCGAGCCGAGGAACTGCTCGGGCGGGTGCGAA TACCGCAGCCAGACAAGGCGCTACGGGCCTTTCCGCATCAGCTTTCCGGGGGCCAGCGCCAGCGCGTGGCGATAGCGGCA GCGATCGCTGCCAAGCCCGCGCTGCTGATCGCCGACGAGGCGACGAGCGCGCTCGACGTCGTCGTCCAGGCCGAGATCGT CCGTCTGCTCGACGGGCTGGTGCGCGAGGACGGCATGACGCTGCTGTTCATCACCCACGATATCGCACTCGCCTCCGGCT TCGTCGATCGGATCGCCGTCTTCCGCGATGCGCGCCTCGTCGAGGCAGGTCCCGTGCGTTCGGTGCTTTCGGCGCCCGCG AGCAACTATACCGCCGCCCTCATCGCCAGCCATCGCGATCTCGCGACGCCACCCCTGATCGAAGAGCTGGCGCCATGA
Upstream 100 bases:
>100_bases CCGTCATACCGGGCGCCGCACTTGCCGTAACCGTACTCGGCGTTCATCTCTTCAGCGAAGGTCTCGGCAAAGCGCTTGGC GATGATGGCGGGAGGGGGGC
Downstream 100 bases:
>100_bases ATCCTCTGCTGTCTATAGAAAACATCTCGAAGGGCTTTTCATCCGCGGGCCGCCGAATCGCCGCGCTCGACAAGGTTTCG CTGACGATCGCAGCCGGGGA
Product: putative ABC transporter ATP-binding protein
Products: NA
Alternate protein names: Stage 0 sporulation protein KD [H]
Number of amino acids: Translated: 265; Mature: 264
Protein sequence:
>265_residues MSDIFCSLRQLSVTYRRDKNNAAAALDRIDLDIAAGERLAIIGESGSGKSTLARALAGLLPDGTKVTGEMLWPARGHPPR PGRDFGFVFQDPGTSLNPVMTIGEQIAEGARRHLGLSWKQAYSRAEELLGRVRIPQPDKALRAFPHQLSGGQRQRVAIAA AIAAKPALLIADEATSALDVVVQAEIVRLLDGLVREDGMTLLFITHDIALASGFVDRIAVFRDARLVEAGPVRSVLSAPA SNYTAALIASHRDLATPPLIEELAP
Sequences:
>Translated_265_residues MSDIFCSLRQLSVTYRRDKNNAAAALDRIDLDIAAGERLAIIGESGSGKSTLARALAGLLPDGTKVTGEMLWPARGHPPR PGRDFGFVFQDPGTSLNPVMTIGEQIAEGARRHLGLSWKQAYSRAEELLGRVRIPQPDKALRAFPHQLSGGQRQRVAIAA AIAAKPALLIADEATSALDVVVQAEIVRLLDGLVREDGMTLLFITHDIALASGFVDRIAVFRDARLVEAGPVRSVLSAPA SNYTAALIASHRDLATPPLIEELAP >Mature_264_residues SDIFCSLRQLSVTYRRDKNNAAAALDRIDLDIAAGERLAIIGESGSGKSTLARALAGLLPDGTKVTGEMLWPARGHPPRP GRDFGFVFQDPGTSLNPVMTIGEQIAEGARRHLGLSWKQAYSRAEELLGRVRIPQPDKALRAFPHQLSGGQRQRVAIAAA IAAKPALLIADEATSALDVVVQAEIVRLLDGLVREDGMTLLFITHDIALASGFVDRIAVFRDARLVEAGPVRSVLSAPAS NYTAALIASHRDLATPPLIEELAP
Specific function: Part of the binding protein-dependent transport system for oligopeptides. Probably responsible for energy coupling to the transport system. Required for sporulation and competence [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI9961250, Length=210, Percent_Identity=34.2857142857143, Blast_Score=78, Evalue=8e-15, Organism=Homo sapiens, GI4505771, Length=210, Percent_Identity=34.2857142857143, Blast_Score=78, Evalue=8e-15, Organism=Homo sapiens, GI9961252, Length=210, Percent_Identity=34.2857142857143, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI42741659, Length=228, Percent_Identity=31.5789473684211, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI11967971, Length=191, Percent_Identity=28.2722513089005, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI255708477, Length=231, Percent_Identity=29.8701298701299, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI171184400, Length=238, Percent_Identity=30.672268907563, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI21536376, Length=224, Percent_Identity=27.2321428571429, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI156105685, Length=231, Percent_Identity=30.3030303030303, Blast_Score=65, Evalue=6e-11, Organism=Escherichia coli, GI145693107, Length=259, Percent_Identity=41.3127413127413, Blast_Score=186, Evalue=2e-48, Organism=Escherichia coli, GI48994883, Length=255, Percent_Identity=38.0392156862745, Blast_Score=178, Evalue=3e-46, Organism=Escherichia coli, GI1789963, Length=251, Percent_Identity=41.0358565737052, Blast_Score=172, Evalue=2e-44, Organism=Escherichia coli, GI1788506, Length=260, Percent_Identity=38.8461538461538, Blast_Score=168, Evalue=3e-43, Organism=Escherichia coli, GI1787759, Length=248, Percent_Identity=37.0967741935484, Blast_Score=157, Evalue=9e-40, Organism=Escherichia coli, GI1787758, Length=258, Percent_Identity=40.3100775193798, Blast_Score=156, Evalue=1e-39, Organism=Escherichia coli, GI1787500, Length=234, Percent_Identity=40.5982905982906, Blast_Score=155, Evalue=4e-39, Organism=Escherichia coli, GI1787548, Length=263, Percent_Identity=33.4600760456274, Blast_Score=151, Evalue=4e-38, Organism=Escherichia coli, GI1789891, Length=223, Percent_Identity=40.8071748878924, Blast_Score=143, Evalue=1e-35, Organism=Escherichia coli, GI1789962, Length=243, Percent_Identity=34.9794238683128, Blast_Score=136, Evalue=1e-33, Organism=Escherichia coli, GI1787547, Length=262, Percent_Identity=32.4427480916031, Blast_Score=129, Evalue=2e-31, Organism=Escherichia coli, GI1787370, Length=225, Percent_Identity=36.4444444444444, Blast_Score=124, Evalue=5e-30, Organism=Escherichia coli, GI1789890, Length=228, Percent_Identity=32.8947368421053, Blast_Score=120, Evalue=9e-29, Organism=Escherichia coli, GI1787029, Length=232, Percent_Identity=37.0689655172414, Blast_Score=115, Evalue=3e-27, Organism=Escherichia coli, GI1787089, Length=217, Percent_Identity=38.2488479262673, Blast_Score=114, Evalue=5e-27, Organism=Escherichia coli, GI87081791, Length=256, Percent_Identity=33.59375, Blast_Score=113, Evalue=1e-26, Organism=Escherichia coli, GI1787712, Length=226, Percent_Identity=34.5132743362832, Blast_Score=112, Evalue=3e-26, Organism=Escherichia coli, GI1788225, Length=236, Percent_Identity=36.0169491525424, Blast_Score=111, Evalue=5e-26, Organism=Escherichia coli, GI48994997, Length=234, Percent_Identity=33.3333333333333, Blast_Score=109, Evalue=2e-25, Organism=Escherichia coli, GI1786398, Length=246, Percent_Identity=32.9268292682927, Blast_Score=104, Evalue=5e-24, Organism=Escherichia coli, GI1789672, Length=234, Percent_Identity=31.6239316239316, Blast_Score=102, Evalue=2e-23, Organism=Escherichia coli, GI87082267, Length=225, Percent_Identity=35.1111111111111, Blast_Score=100, Evalue=9e-23, Organism=Escherichia coli, GI87081709, Length=253, Percent_Identity=30.8300395256917, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI1789032, Length=225, Percent_Identity=34.2222222222222, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI1786563, Length=260, Percent_Identity=33.0769230769231, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI1790467, Length=228, Percent_Identity=32.4561403508772, Blast_Score=98, Evalue=5e-22, Organism=Escherichia coli, GI1788761, Length=231, Percent_Identity=33.7662337662338, Blast_Score=98, Evalue=7e-22, Organism=Escherichia coli, GI1787105, Length=212, Percent_Identity=38.2075471698113, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI1787164, Length=203, Percent_Identity=34.4827586206897, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1786253, Length=216, Percent_Identity=31.9444444444444, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1786872, Length=211, Percent_Identity=32.2274881516588, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI1786703, Length=213, Percent_Identity=37.0892018779343, Blast_Score=89, Evalue=4e-19, Organism=Escherichia coli, GI1790544, Length=235, Percent_Identity=32.3404255319149, Blast_Score=88, Evalue=6e-19, Organism=Escherichia coli, GI87081834, Length=241, Percent_Identity=32.7800829875519, Blast_Score=88, Evalue=7e-19, Organism=Escherichia coli, GI1790162, Length=237, Percent_Identity=32.0675105485232, Blast_Score=86, Evalue=4e-18, Organism=Escherichia coli, GI1786803, Length=256, Percent_Identity=28.90625, Blast_Score=85, Evalue=4e-18, Organism=Escherichia coli, GI1788450, Length=230, Percent_Identity=29.5652173913043, Blast_Score=84, Evalue=6e-18, Organism=Escherichia coli, GI1788644, Length=142, Percent_Identity=35.2112676056338, Blast_Score=84, Evalue=7e-18, Organism=Escherichia coli, GI1786319, Length=240, Percent_Identity=27.9166666666667, Blast_Score=81, Evalue=6e-17, Organism=Escherichia coli, GI1790190, Length=212, Percent_Identity=27.8301886792453, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1786345, Length=245, Percent_Identity=27.7551020408163, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI1789873, Length=217, Percent_Identity=34.1013824884793, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI1790739, Length=236, Percent_Identity=29.2372881355932, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1789991, Length=212, Percent_Identity=30.188679245283, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI48995001, Length=211, Percent_Identity=32.2274881516588, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI48994943, Length=252, Percent_Identity=28.5714285714286, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1788165, Length=228, Percent_Identity=26.7543859649123, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1787041, Length=205, Percent_Identity=27.8048780487805, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1790525, Length=223, Percent_Identity=26.9058295964126, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1787182, Length=233, Percent_Identity=29.1845493562232, Blast_Score=68, Evalue=7e-13, Organism=Escherichia coli, GI1788210, Length=240, Percent_Identity=28.75, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1788053, Length=192, Percent_Identity=29.6875, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1786975, Length=198, Percent_Identity=27.7777777777778, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1788897, Length=213, Percent_Identity=28.6384976525822, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1789593, Length=214, Percent_Identity=23.8317757009346, Blast_Score=62, Evalue=5e-11, Organism=Caenorhabditis elegans, GI193209708, Length=218, Percent_Identity=34.4036697247706, Blast_Score=88, Evalue=4e-18, Organism=Caenorhabditis elegans, GI193202349, Length=243, Percent_Identity=29.6296296296296, Blast_Score=84, Evalue=1e-16, Organism=Caenorhabditis elegans, GI193208177, Length=227, Percent_Identity=31.2775330396476, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17541710, Length=234, Percent_Identity=28.6324786324786, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI115533592, Length=242, Percent_Identity=28.9256198347107, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI193211015, Length=230, Percent_Identity=29.5652173913043, Blast_Score=71, Evalue=7e-13, Organism=Caenorhabditis elegans, GI193211017, Length=230, Percent_Identity=29.5652173913043, Blast_Score=70, Evalue=8e-13, Organism=Caenorhabditis elegans, GI71996809, Length=230, Percent_Identity=30, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI25146777, Length=215, Percent_Identity=28.8372093023256, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17552010, Length=207, Percent_Identity=27.0531400966184, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17569143, Length=237, Percent_Identity=30.8016877637131, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17558664, Length=224, Percent_Identity=28.125, Blast_Score=64, Evalue=8e-11, Organism=Saccharomyces cerevisiae, GI6324985, Length=253, Percent_Identity=28.0632411067194, Blast_Score=72, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6323217, Length=234, Percent_Identity=32.0512820512821, Blast_Score=72, Evalue=1e-13, Organism=Drosophila melanogaster, GI23397593, Length=224, Percent_Identity=33.0357142857143, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI24641565, Length=224, Percent_Identity=32.1428571428571, Blast_Score=78, Evalue=5e-15, Organism=Drosophila melanogaster, GI24638558, Length=197, Percent_Identity=30.9644670050761, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24638550, Length=197, Percent_Identity=30.9644670050761, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24638552, Length=197, Percent_Identity=30.9644670050761, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24638554, Length=197, Percent_Identity=30.9644670050761, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24638546, Length=197, Percent_Identity=30.9644670050761, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24638556, Length=197, Percent_Identity=30.9644670050761, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24638548, Length=197, Percent_Identity=30.9644670050761, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI28574533, Length=233, Percent_Identity=27.4678111587983, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI19920532, Length=213, Percent_Identity=29.5774647887324, Blast_Score=74, Evalue=7e-14, Organism=Drosophila melanogaster, GI24580930, Length=213, Percent_Identity=29.5774647887324, Blast_Score=74, Evalue=7e-14, Organism=Drosophila melanogaster, GI24582014, Length=244, Percent_Identity=28.2786885245902, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24582012, Length=244, Percent_Identity=28.2786885245902, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI116007184, Length=242, Percent_Identity=26.4462809917355, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI221500365, Length=242, Percent_Identity=26.4462809917355, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI28574744, Length=205, Percent_Identity=28.2926829268293, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI17136592, Length=211, Percent_Identity=27.9620853080569, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI281363262, Length=212, Percent_Identity=32.0754716981132, Blast_Score=64, Evalue=7e-11, Organism=Drosophila melanogaster, GI24653245, Length=212, Percent_Identity=32.0754716981132, Blast_Score=64, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 28365; Mature: 28234
Theoretical pI: Translated: 7.73; Mature: 7.73
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDIFCSLRQLSVTYRRDKNNAAAALDRIDLDIAAGERLAIIGESGSGKSTLARALAGLL CCHHHHHHHHHHHHHHCCCCCHHHHHHHHCEEEECCCEEEEEECCCCCHHHHHHHHHHHC PDGTKVTGEMLWPARGHPPRPGRDFGFVFQDPGTSLNPVMTIGEQIAEGARRHLGLSWKQ CCCCEECCEEECCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCHHH AYSRAEELLGRVRIPQPDKALRAFPHQLSGGQRQRVAIAAAIAAKPALLIADEATSALDV HHHHHHHHHHCCCCCCCCHHHHHCCHHHCCCCHHHHHHHHHHHHCCEEEEECCCHHHHHH VVQAEIVRLLDGLVREDGMTLLFITHDIALASGFVDRIAVFRDARLVEAGPVRSVLSAPA HHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHCCC SNYTAALIASHRDLATPPLIEELAP CCCEEEEEECCCCCCCCCHHHHHCC >Mature Secondary Structure SDIFCSLRQLSVTYRRDKNNAAAALDRIDLDIAAGERLAIIGESGSGKSTLARALAGLL CHHHHHHHHHHHHHHCCCCCHHHHHHHHCEEEECCCEEEEEECCCCCHHHHHHHHHHHC PDGTKVTGEMLWPARGHPPRPGRDFGFVFQDPGTSLNPVMTIGEQIAEGARRHLGLSWKQ CCCCEECCEEECCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCHHH AYSRAEELLGRVRIPQPDKALRAFPHQLSGGQRQRVAIAAAIAAKPALLIADEATSALDV HHHHHHHHHHCCCCCCCCHHHHHCCHHHCCCCHHHHHHHHHHHHCCEEEEECCCHHHHHH VVQAEIVRLLDGLVREDGMTLLFITHDIALASGFVDRIAVFRDARLVEAGPVRSVLSAPA HHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHCCC SNYTAALIASHRDLATPPLIEELAP CCCEEEEEECCCCCCCCCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 1901616; 1899858; 9384377 [H]