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The map label for this gene is yafC [H]

Identifier: 190894475

GI number: 190894475

Start: 134103

End: 135008

Strand: Reverse

Name: yafC [H]

Synonym: RHECIAT_PC0000137

Alternate gene names: 190894475

Gene position: 135008-134103 (Counterclockwise)

Preceding gene: 190894479

Following gene: 190894474

Centisome position: 12.37

GC content: 60.6

Gene sequence:

>906_bases
ATGGAGCGTTCCGGTGAGATGGAAGTGTTCGCGCGCGTTGTACAGGACGGTGGTTTCTCAGCCGCCGCCCGCAATCTCGA
CATCACTCCGTCGGCAGTCAGCAAACTGATTGCACGCCTGGAAGCGAGGCTGGGCACGCGCCTTCTGGTACGGACGACCC
GCGCTCTGACACTGACGGAGGAGGGCGAGGCCTATCACCATGCCGCACTGAAGATTCTGCAGGAGCTGAATGACGCCGAT
CAGGCGGCTGCTGGAGGAGCGGTTCGCGGCCGGCTGAGGATCAACACGACAATCCCCTTCGGGACCATGTTCGTCGCACC
GGTTATTCCTGATTTCATCGCACGCAATCCGGATTTGATCGTCGATCTCAGCTTCACCGACGGCATTGTCGATCTGGTTG
CGGAAAAAACCGACGTCGCCATCCGTATGGGCGACCTGCCGGACAGTGGGCTGATCGCTCGCAAGCTGGGGCAGAGTCGA
CGGGTGGTCTGCGCATCAGCCGACTACTTGGTGCGCTGCGGTTCCCCGGTCAAGCCGGCGGATCTTGAGCATCACGACTG
CCTGACATTCAATTTCCGGCGCGCAAGACCTTCCTGGCCGTTTCGTTGCGGCGGCCAGGACGTCGCGCAACCCGTCAAGG
GCAGCATTGTCGTGAACAACGGCGAGACGATGAAACAGATGGCACTGGCTGGTGCCGGCATTGCCAGGGTCGGTCTGTTT
CATGTGGCCGATGAGATTGCGACGGGACGGCTTGTTCCGCTGCTCGAAGAATATAATCCGGGCGATCTGGAACTGGTTCA
CGCCGTTTACGTCGGTGGCGGCCCCTTGCCACACCGTGTTCGGGACTTCATCGAGTATATGGTCGTCACCTTGGGTGCAT
CACCGCTTTTGCGAGCGGACTCCTGA

Upstream 100 bases:

>100_bases
GATTGTTGCTGGAGAGAATTTATGATTAAGCAAGGCGAGGAACTATTGCCTGCGAGAGACATGCACCTGTGAATGAGGGT
CATCAATGCCGCCTATTGTG

Downstream 100 bases:

>100_bases
TCGCGGCGGTGGAAAGGAAGCGAACTTCTGCGTCGCGGCGATCGTCCCCACCTCATCGTTTCTGCTTCCCCAAATTCTCT
GCCGGCATCGGAACTCCAGC

Product: putative LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MERSGEMEVFARVVQDGGFSAAARNLDITPSAVSKLIARLEARLGTRLLVRTTRALTLTEEGEAYHHAALKILQELNDAD
QAAAGGAVRGRLRINTTIPFGTMFVAPVIPDFIARNPDLIVDLSFTDGIVDLVAEKTDVAIRMGDLPDSGLIARKLGQSR
RVVCASADYLVRCGSPVKPADLEHHDCLTFNFRRARPSWPFRCGGQDVAQPVKGSIVVNNGETMKQMALAGAGIARVGLF
HVADEIATGRLVPLLEEYNPGDLELVHAVYVGGGPLPHRVRDFIEYMVVTLGASPLLRADS

Sequences:

>Translated_301_residues
MERSGEMEVFARVVQDGGFSAAARNLDITPSAVSKLIARLEARLGTRLLVRTTRALTLTEEGEAYHHAALKILQELNDAD
QAAAGGAVRGRLRINTTIPFGTMFVAPVIPDFIARNPDLIVDLSFTDGIVDLVAEKTDVAIRMGDLPDSGLIARKLGQSR
RVVCASADYLVRCGSPVKPADLEHHDCLTFNFRRARPSWPFRCGGQDVAQPVKGSIVVNNGETMKQMALAGAGIARVGLF
HVADEIATGRLVPLLEEYNPGDLELVHAVYVGGGPLPHRVRDFIEYMVVTLGASPLLRADS
>Mature_301_residues
MERSGEMEVFARVVQDGGFSAAARNLDITPSAVSKLIARLEARLGTRLLVRTTRALTLTEEGEAYHHAALKILQELNDAD
QAAAGGAVRGRLRINTTIPFGTMFVAPVIPDFIARNPDLIVDLSFTDGIVDLVAEKTDVAIRMGDLPDSGLIARKLGQSR
RVVCASADYLVRCGSPVKPADLEHHDCLTFNFRRARPSWPFRCGGQDVAQPVKGSIVVNNGETMKQMALAGAGIARVGLF
HVADEIATGRLVPLLEEYNPGDLELVHAVYVGGGPLPHRVRDFIEYMVVTLGASPLLRADS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=296, Percent_Identity=39.1891891891892, Blast_Score=185, Evalue=3e-48,
Organism=Escherichia coli, GI1789639, Length=289, Percent_Identity=36.6782006920415, Blast_Score=156, Evalue=2e-39,
Organism=Escherichia coli, GI87081978, Length=293, Percent_Identity=37.2013651877133, Blast_Score=148, Evalue=5e-37,
Organism=Escherichia coli, GI145693193, Length=291, Percent_Identity=32.6460481099656, Blast_Score=135, Evalue=4e-33,
Organism=Escherichia coli, GI1789440, Length=260, Percent_Identity=34.6153846153846, Blast_Score=135, Evalue=5e-33,
Organism=Escherichia coli, GI1787128, Length=264, Percent_Identity=28.4090909090909, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1787589, Length=283, Percent_Identity=27.208480565371, Blast_Score=107, Evalue=8e-25,
Organism=Escherichia coli, GI1789173, Length=255, Percent_Identity=28.2352941176471, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI157672245, Length=122, Percent_Identity=36.0655737704918, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1790011, Length=300, Percent_Identity=26, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1788706, Length=291, Percent_Identity=24.3986254295533, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786448, Length=139, Percent_Identity=30.2158273381295, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32490; Mature: 32490

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERSGEMEVFARVVQDGGFSAAARNLDITPSAVSKLIARLEARLGTRLLVRTTRALTLTE
CCCCCHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHCCEEEEEEEEEEEEEC
EGEAYHHAALKILQELNDADQAAAGGAVRGRLRINTTIPFGTMFVAPVIPDFIARNPDLI
CCCHHHHHHHHHHHHHCHHHHHHCCCEEEEEEEEEEECCCHHHHHHHHHHHHHCCCCCEE
VDLSFTDGIVDLVAEKTDVAIRMGDLPDSGLIARKLGQSRRVVCASADYLVRCGSPVKPA
EEEECCCHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCEEEEECCCEEEECCCCCCCC
DLEHHDCLTFNFRRARPSWPFRCGGQDVAQPVKGSIVVNNGETMKQMALAGAGIARVGLF
CCCCCCEEEEEEECCCCCCCCCCCCHHHHHCCCCEEEEECCHHHHHHHHHCCCHHHHHHH
HVADEIATGRLVPLLEEYNPGDLELVHAVYVGGGPLPHRVRDFIEYMVVTLGASPLLRAD
HHHHHHHCCCEEHHHHCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCC
S
C
>Mature Secondary Structure
MERSGEMEVFARVVQDGGFSAAARNLDITPSAVSKLIARLEARLGTRLLVRTTRALTLTE
CCCCCHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHCCEEEEEEEEEEEEEC
EGEAYHHAALKILQELNDADQAAAGGAVRGRLRINTTIPFGTMFVAPVIPDFIARNPDLI
CCCHHHHHHHHHHHHHCHHHHHHCCCEEEEEEEEEEECCCHHHHHHHHHHHHHCCCCCEE
VDLSFTDGIVDLVAEKTDVAIRMGDLPDSGLIARKLGQSRRVVCASADYLVRCGSPVKPA
EEEECCCHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCEEEEECCCEEEECCCCCCCC
DLEHHDCLTFNFRRARPSWPFRCGGQDVAQPVKGSIVVNNGETMKQMALAGAGIARVGLF
CCCCCCEEEEEEECCCCCCCCCCCCHHHHHCCCCEEEEECCHHHHHHHHHCCCHHHHHHH
HVADEIATGRLVPLLEEYNPGDLELVHAVYVGGGPLPHRVRDFIEYMVVTLGASPLLRAD
HHHHHHHCCCEEHHHHCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCC
S
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]