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The map label for this gene is yddU [C]

Identifier: 190894463

GI number: 190894463

Start: 122842

End: 124788

Strand: Reverse

Name: yddU [C]

Synonym: RHECIAT_PC0000125

Alternate gene names: 190894463

Gene position: 124788-122842 (Counterclockwise)

Preceding gene: 190894471

Following gene: 190894462

Centisome position: 11.43

GC content: 57.47

Gene sequence:

>1947_bases
ATGAGCGCGGCGTACCCTACTGTGCGGCGTGATGAATCAACCGACAGCTTTTCATTTTCCGAGGCTTGCAAATCTCTGGA
AGTCGAAAATGATGCTATCAGAAGGCAAAGCTCACGGCATGGTCTTTGGATCGCAGTCGCCGTTTATGTGTCCTTCGCAC
TTCCCGACCGGTGGCTTATCCCCGACGTTGCGCCTGCGACGATCACCGCGCGATTCGTCGTCGCGGCGATGGCGCTGCTG
GCTTTTGAAGTCTTGCGACTGGCGAAAGCGAAAACCGTCTGGCTGGACATCACATGCGCCCTTGCGCTGCTTGCGGGCTA
TTTGGCCTGGCTTTGCCCGGCGATCGGCACCCGTGACGTCGCTGCCATGTCTTACTACATGATTTTCGGCGCCATCTTCA
TGATGGGCGCCAATCTCTTTTTCAGTTTCCCGTTTCGGCTGTCGGTGATCACGTCAAGCTTCGTGCTCTGCGCATTTTTC
GTGACGATCGAGGCGTATTTTCCGTCAAGTCAAATCTACAAGCTTGCCTTCGGGATGTTCTACGTTTCCTGCTTTGTCTT
CACGTCTTCCATCAATTGGCGATTGAATGTCGAGCGCCGAAACGTGTTGCTAAACGCGGCGGAGGCCCGCTATCAGCACT
GGGAAGCGTCCGAACGCGGAAGGTCGCTGCTCGAGCTTTCGAATACCGACTACCTGACAGGCATAAGCAACCGGCGTGCG
CTCGATCGGCGACTCGACGAATGCTGGGCCGCCTGGAAGGACGAAGGCCGCGACTTTGTCGTGTTCCTCATCGACGTCGA
CTTCTTCAAACGCTTCAATGATCGCTACGGGCATCAGGAAGGCGACCGATGCCTGACTGTCGTCGCCAATGTGCTGAAGG
CGGTGGTAGAATCGTCGGGTGGCATGATCGGCAGGTACGGCGGCGAGGAGTTTATCGTGGTCATGCCGGCCGAAACTCCC
TCGATCGCCATGAGTCTCGCCGAAAAGATCAGAATGGAAGTCGAGTTTCTTGCGATTGCTCATGACGAGCGACCAGATGA
CAGCCCGATCGTCACCGTCAGCATTGGCGTCGCTTTCACCCGCGAGGACGTTGGAGAGAAAGTTGAGCGGATAGTGCGTG
AAGCTGATCTTGCTCTCTACAATGCCAAAGCAAGCGGCCGAAACTGCATTCGTCGGTTTGATCCCTCGTTGCCTCGCCCC
GACGACAATGCCGGTAAACTCGTCCCGCTGCTGACGGCCGCCATTGACCGCAAACTGGTCTCGCTCGTTTACCAACCGAT
CTTTGACCTGACGAATGAGAGAGCAAAAGCTGTCGAGGCTTTGATGCGCCTCAGGATGCCCGATGGCACCGCGGTTTCGC
CGAGGACGTTCATTCCGGTTGCGGAGCGAACGGGCGCTATCCTCGAATTGGGTAAGTGGGCGATCGAGACGGCATGCCGC
GATATACTGATGACAGATCGGATGGCTACCGTCAGCGTCAACGTGTCGCCGATACAGCTGCGCTCCCCCGGCTTCGCTGC
GAGTGTCGGTGATATTCTTGCGCGGTGCGGGGTCAGCGGGTCGCGGCTGGCCCTGGAAGTCACCGAAGGGCTGGACATGG
ACATGCAGTCGGAGGTGTTGAAATGCGTTGCCGACCTGCGGGCTCTCGGCGTCGAAATTTGGCTTGACGATTTCGGCTGC
GGCTTCGCGGGCCTCTCTTGGCTGAGGGCGATCGAGTTTCAGACGGTCAAGGTCGATCGAACCTTCCTGCACGATTGCTC
CGACCCACGCGGATTGACGATGCTTCAGGACATGATCTCTCTCATCCGCAATCGTGGGAATACGATCCTGGTGGAGGGCG
TTGAAACTGCCGCACAATTGTCCCTGCTCAAGGATCTTCGCATTGATCGTGTCCAAGGCTTTCATATGGGCATGCCGGTG
AGCGCCGAGCGTCTGAACGCGGCATAA

Upstream 100 bases:

>100_bases
AGACCAACCCGTTGCAGGTTGCCGAACGAAATTTTGGAGGGCGCCGAAGCATGGCTTGCAGTTTATTTTCCGTAGATCGT
GGCCGGGCTGGCATCGTTAC

Downstream 100 bases:

>100_bases
CTCGAGCTCAACTTTTCCGGAAGACGGCTATCTTTTGCCGATCTGTTGCGAATGCGTTGCCGACGCTTCGAAGGCGAAAG
GGTCAGTTTCGCTGATCACT

Product: putative sensory box/GGDEF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 648; Mature: 647

Protein sequence:

>648_residues
MSAAYPTVRRDESTDSFSFSEACKSLEVENDAIRRQSSRHGLWIAVAVYVSFALPDRWLIPDVAPATITARFVVAAMALL
AFEVLRLAKAKTVWLDITCALALLAGYLAWLCPAIGTRDVAAMSYYMIFGAIFMMGANLFFSFPFRLSVITSSFVLCAFF
VTIEAYFPSSQIYKLAFGMFYVSCFVFTSSINWRLNVERRNVLLNAAEARYQHWEASERGRSLLELSNTDYLTGISNRRA
LDRRLDECWAAWKDEGRDFVVFLIDVDFFKRFNDRYGHQEGDRCLTVVANVLKAVVESSGGMIGRYGGEEFIVVMPAETP
SIAMSLAEKIRMEVEFLAIAHDERPDDSPIVTVSIGVAFTREDVGEKVERIVREADLALYNAKASGRNCIRRFDPSLPRP
DDNAGKLVPLLTAAIDRKLVSLVYQPIFDLTNERAKAVEALMRLRMPDGTAVSPRTFIPVAERTGAILELGKWAIETACR
DILMTDRMATVSVNVSPIQLRSPGFAASVGDILARCGVSGSRLALEVTEGLDMDMQSEVLKCVADLRALGVEIWLDDFGC
GFAGLSWLRAIEFQTVKVDRTFLHDCSDPRGLTMLQDMISLIRNRGNTILVEGVETAAQLSLLKDLRIDRVQGFHMGMPV
SAERLNAA

Sequences:

>Translated_648_residues
MSAAYPTVRRDESTDSFSFSEACKSLEVENDAIRRQSSRHGLWIAVAVYVSFALPDRWLIPDVAPATITARFVVAAMALL
AFEVLRLAKAKTVWLDITCALALLAGYLAWLCPAIGTRDVAAMSYYMIFGAIFMMGANLFFSFPFRLSVITSSFVLCAFF
VTIEAYFPSSQIYKLAFGMFYVSCFVFTSSINWRLNVERRNVLLNAAEARYQHWEASERGRSLLELSNTDYLTGISNRRA
LDRRLDECWAAWKDEGRDFVVFLIDVDFFKRFNDRYGHQEGDRCLTVVANVLKAVVESSGGMIGRYGGEEFIVVMPAETP
SIAMSLAEKIRMEVEFLAIAHDERPDDSPIVTVSIGVAFTREDVGEKVERIVREADLALYNAKASGRNCIRRFDPSLPRP
DDNAGKLVPLLTAAIDRKLVSLVYQPIFDLTNERAKAVEALMRLRMPDGTAVSPRTFIPVAERTGAILELGKWAIETACR
DILMTDRMATVSVNVSPIQLRSPGFAASVGDILARCGVSGSRLALEVTEGLDMDMQSEVLKCVADLRALGVEIWLDDFGC
GFAGLSWLRAIEFQTVKVDRTFLHDCSDPRGLTMLQDMISLIRNRGNTILVEGVETAAQLSLLKDLRIDRVQGFHMGMPV
SAERLNAA
>Mature_647_residues
SAAYPTVRRDESTDSFSFSEACKSLEVENDAIRRQSSRHGLWIAVAVYVSFALPDRWLIPDVAPATITARFVVAAMALLA
FEVLRLAKAKTVWLDITCALALLAGYLAWLCPAIGTRDVAAMSYYMIFGAIFMMGANLFFSFPFRLSVITSSFVLCAFFV
TIEAYFPSSQIYKLAFGMFYVSCFVFTSSINWRLNVERRNVLLNAAEARYQHWEASERGRSLLELSNTDYLTGISNRRAL
DRRLDECWAAWKDEGRDFVVFLIDVDFFKRFNDRYGHQEGDRCLTVVANVLKAVVESSGGMIGRYGGEEFIVVMPAETPS
IAMSLAEKIRMEVEFLAIAHDERPDDSPIVTVSIGVAFTREDVGEKVERIVREADLALYNAKASGRNCIRRFDPSLPRPD
DNAGKLVPLLTAAIDRKLVSLVYQPIFDLTNERAKAVEALMRLRMPDGTAVSPRTFIPVAERTGAILELGKWAIETACRD
ILMTDRMATVSVNVSPIQLRSPGFAASVGDILARCGVSGSRLALEVTEGLDMDMQSEVLKCVADLRALGVEIWLDDFGCG
FAGLSWLRAIEFQTVKVDRTFLHDCSDPRGLTMLQDMISLIRNRGNTILVEGVETAAQLSLLKDLRIDRVQGFHMGMPVS
AERLNAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=440, Percent_Identity=30.4545454545455, Blast_Score=184, Evalue=2e-47,
Organism=Escherichia coli, GI1787541, Length=423, Percent_Identity=28.8416075650118, Blast_Score=156, Evalue=4e-39,
Organism=Escherichia coli, GI226510982, Length=372, Percent_Identity=27.9569892473118, Blast_Score=119, Evalue=8e-28,
Organism=Escherichia coli, GI1790496, Length=239, Percent_Identity=28.8702928870293, Blast_Score=109, Evalue=5e-25,
Organism=Escherichia coli, GI87081845, Length=237, Percent_Identity=29.1139240506329, Blast_Score=105, Evalue=6e-24,
Organism=Escherichia coli, GI1788502, Length=235, Percent_Identity=29.7872340425532, Blast_Score=105, Evalue=7e-24,
Organism=Escherichia coli, GI87081743, Length=227, Percent_Identity=29.0748898678414, Blast_Score=99, Evalue=8e-22,
Organism=Escherichia coli, GI1787055, Length=229, Percent_Identity=31.4410480349345, Blast_Score=98, Evalue=2e-21,
Organism=Escherichia coli, GI87081881, Length=162, Percent_Identity=35.8024691358025, Blast_Score=98, Evalue=2e-21,
Organism=Escherichia coli, GI1787802, Length=162, Percent_Identity=34.5679012345679, Blast_Score=96, Evalue=9e-21,
Organism=Escherichia coli, GI1786584, Length=178, Percent_Identity=33.1460674157303, Blast_Score=90, Evalue=4e-19,
Organism=Escherichia coli, GI1786507, Length=227, Percent_Identity=26.8722466960352, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI1788849, Length=258, Percent_Identity=25.1937984496124, Blast_Score=86, Evalue=7e-18,
Organism=Escherichia coli, GI87082096, Length=424, Percent_Identity=22.6415094339623, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI87082007, Length=163, Percent_Identity=33.1288343558282, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI1787262, Length=164, Percent_Identity=35.3658536585366, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI145693134, Length=168, Percent_Identity=35.7142857142857, Blast_Score=80, Evalue=5e-16,
Organism=Escherichia coli, GI1787816, Length=162, Percent_Identity=35.1851851851852, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI87081977, Length=174, Percent_Identity=32.7586206896552, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1788085, Length=164, Percent_Identity=30.4878048780488, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI87081980, Length=222, Percent_Identity=26.5765765765766, Blast_Score=76, Evalue=7e-15,
Organism=Escherichia coli, GI87081974, Length=110, Percent_Identity=34.5454545454545, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1789650, Length=381, Percent_Identity=24.1469816272966, Blast_Score=72, Evalue=9e-14,
Organism=Escherichia coli, GI1787056, Length=168, Percent_Identity=32.1428571428571, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI1788381, Length=182, Percent_Identity=25.8241758241758, Blast_Score=63, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 72133; Mature: 72002

Theoretical pI: Translated: 5.36; Mature: 5.36

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAAYPTVRRDESTDSFSFSEACKSLEVENDAIRRQSSRHGLWIAVAVYVSFALPDRWLI
CCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHCCCCCCEEEEHHHHHHHHCCCCCCC
PDVAPATITARFVVAAMALLAFEVLRLAKAKTVWLDITCALALLAGYLAWLCPAIGTRDV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEHHHHHHHHHHHHHHHHHHCCCCCHH
AAMSYYMIFGAIFMMGANLFFSFPFRLSVITSSFVLCAFFVTIEAYFPSSQIYKLAFGMF
HHHHHHHHHHHHHHHCCHHHEECCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
YVSCFVFTSSINWRLNVERRNVLLNAAEARYQHWEASERGRSLLELSNTDYLTGISNRRA
HHHHHHHHCCCCEEEEEEHHHHEEEHHHHHHHHCCHHHHCCHHHHCCCCCEEECCCCHHH
LDRRLDECWAAWKDEGRDFVVFLIDVDFFKRFNDRYGHQEGDRCLTVVANVLKAVVESSG
HHHHHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC
GMIGRYGGEEFIVVMPAETPSIAMSLAEKIRMEVEFLAIAHDERPDDSPIVTVSIGVAFT
CEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHEEEEECCCCCCCCCEEEEEECEEEC
REDVGEKVERIVREADLALYNAKASGRNCIRRFDPSLPRPDDNAGKLVPLLTAAIDRKLV
HHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH
SLVYQPIFDLTNERAKAVEALMRLRMPDGTAVSPRTFIPVAERTGAILELGKWAIETACR
HHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCEEECCHHHCCHHHHHHHHHHHHHHH
DILMTDRMATVSVNVSPIQLRSPGFAASVGDILARCGVSGSRLALEVTEGLDMDMQSEVL
HHHHCCCEEEEEEECCEEEECCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHH
KCVADLRALGVEIWLDDFGCGFAGLSWLRAIEFQTVKVDRTFLHDCSDPRGLTMLQDMIS
HHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHEEEEECHHHHHCCCCCCCHHHHHHHHH
LIRNRGNTILVEGVETAAQLSLLKDLRIDRVQGFHMGMPVSAERLNAA
HHHCCCCEEEEECHHHHHHHHHHHHHHHHHHCCEECCCCCCHHHCCCC
>Mature Secondary Structure 
SAAYPTVRRDESTDSFSFSEACKSLEVENDAIRRQSSRHGLWIAVAVYVSFALPDRWLI
CCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHCCCCCCEEEEHHHHHHHHCCCCCCC
PDVAPATITARFVVAAMALLAFEVLRLAKAKTVWLDITCALALLAGYLAWLCPAIGTRDV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEHHHHHHHHHHHHHHHHHHCCCCCHH
AAMSYYMIFGAIFMMGANLFFSFPFRLSVITSSFVLCAFFVTIEAYFPSSQIYKLAFGMF
HHHHHHHHHHHHHHHCCHHHEECCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
YVSCFVFTSSINWRLNVERRNVLLNAAEARYQHWEASERGRSLLELSNTDYLTGISNRRA
HHHHHHHHCCCCEEEEEEHHHHEEEHHHHHHHHCCHHHHCCHHHHCCCCCEEECCCCHHH
LDRRLDECWAAWKDEGRDFVVFLIDVDFFKRFNDRYGHQEGDRCLTVVANVLKAVVESSG
HHHHHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC
GMIGRYGGEEFIVVMPAETPSIAMSLAEKIRMEVEFLAIAHDERPDDSPIVTVSIGVAFT
CEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHEEEEECCCCCCCCCEEEEEECEEEC
REDVGEKVERIVREADLALYNAKASGRNCIRRFDPSLPRPDDNAGKLVPLLTAAIDRKLV
HHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH
SLVYQPIFDLTNERAKAVEALMRLRMPDGTAVSPRTFIPVAERTGAILELGKWAIETACR
HHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCEEECCHHHCCHHHHHHHHHHHHHHH
DILMTDRMATVSVNVSPIQLRSPGFAASVGDILARCGVSGSRLALEVTEGLDMDMQSEVL
HHHHCCCEEEEEEECCEEEECCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHH
KCVADLRALGVEIWLDDFGCGFAGLSWLRAIEFQTVKVDRTFLHDCSDPRGLTMLQDMIS
HHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHEEEEECHHHHHCCCCCCCHHHHHHHHH
LIRNRGNTILVEGVETAAQLSLLKDLRIDRVQGFHMGMPVSAERLNAA
HHHCCCCEEEEECHHHHHHHHHHHHHHHHHHCCEECCCCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]