Click here to switch to the map view.

The map label for this gene is gatA [H]

Identifier: 190894440

GI number: 190894440

Start: 97630

End: 99441

Strand: Reverse

Name: gatA [H]

Synonym: RHECIAT_PC0000102

Alternate gene names: 190894440

Gene position: 99441-97630 (Counterclockwise)

Preceding gene: 190894441

Following gene: 190894439

Centisome position: 9.11

GC content: 66.23

Gene sequence:

>1812_bases
ATGCTCCCCGCCATTCTTGATCTTGCTTCGCTGCGGTCCGCCTATGCGGCGGGCCTTTCCCCGCTCGAGCTGGTGGAAGA
GATCATCGCAAGATGCAGTGCGTCCGACGATCCGGCCATCTTCATCACCACGACGCCCGAAGAGGAATTGCGCGCCGCTG
CCCGCGAGCTGGTGGCCCGCGCGCCCGAACCGAACAGCCTGCCGCTCTGGGGCATTCCCTTCGCCGTCAAGGACAATATC
GACGTCACCGGCCTGCCGACGACGGCTGCCTGCCCGGCTTTCGCCTATCACCCGCAGGCGGACGCGGCAACGGTCGCGCG
GTTGCGGGCGGCCGGCGCCCTCGTGATCGGCAAGACCAATCTCGACCAGTTCGCAACGGGGCTGAACGGCACGCGCTCGC
CGCATGGCGCGCCGCGTTCGGTTTTCGATCGCAACTATGTCTCCGGCGGCTCCAGCTCGGGTTCGGCGGTCGCCGTGGCG
GCCGGCCTGGCAAGCTTCTCGCTCGGAACCGACACGGCCGGTTCCGGCCGCGTGCCGGCCGCTTTTAACAATCTCGTCGG
CATCAAGCCGACGCCGGGGCTGGTGCCCAATGTCGGCGTGGTGCCTGCCTGCCGCAGCGTCGATGTCGTCACCGTCTTCG
CCGCGACGGTCGGCGACGGCCTTGCCATCCGCCGGATCATGGAAGGCTACGACGCCCGCGATCCGTTTTCACGGCAAGCC
ACACCCGCGAGCCTGCCCGCGACGCGCCCGCGCATCGGCGTCCTCGATGGTGCGGAACGGGAATTTTACGGCAACAGGCA
AGTGGAGGCCCTCTATGACGCGGCAATCGAAAGGGCGCGATCGCTGGGTGCGGTGATCGTGCCTTTCGACTACGCGCCAT
TCCGGCAGGCGGCCGAACTTCTCTACAACGGCCCCTGGGTCGCCGAGCGGCTGGCGGCGGTCAAGGAATTCCTGGCAACG
AATGGCGGCGACTTCGACCCGACGGTGCGAGCCATCATCGAAGGGGCAAAGGCCTACGATGCCGTCGACGCTTTTGAGGG
CCGCTACAGGCTGGAAGCATTGCGGCAGAAAACAAAAGCCGAATGGGAGAAGGTGGATTTCCTGATGCTGCCGACATCCC
CCACCACCTACAGCGTCGAAGAAATGCAGGCGGACCCGATCGTCAAGAACAGCCATTTCGGCCGCTATACCAATTTTGCC
AATCTGCTCGATTGCGCCGCGATCGCCATTCCCGCCGGTTTTGACGCAGACCGTCATCTGCCTGCAGGCGTGATGCTGGT
CGGACCCGCCTTCACCGACGATGCGCTGGCGCCCTTTGCCGACGCCCTGCACCGCGCGGCGGAAGCGGGAATGGGCAAGG
ACCGCCACATGGCGCTGCCAGAGGAAAGCCGCGTTTCACCGCCGGCCGACGACTTCGTCCCGATCGTCGTCGTCGGTGCC
CATCTGACTGACATGCCGCTGAACCACGAACTGACGCGGCCGGGCGGATACAGGTTGAGAACGGGACGAACGGATGGCAG
CTACCGCCTCTTCGCCCTCAGCGGCACGATCCCGCCCAAGCCCGGGCTGGTGCGCGATCCGGCCTTTGCCGGCGAGGGCG
TGGAGATCGAGGTCTGGGCGCTGCCACCGGCCGCGTTCGCCCGTTTCGTCCAGAACATTCCGGCGCCGCTCGGCGTCGGC
AAGATCACGCTGGACGACGCGAGCTGCATCACGGGATTCCTGTGCGAGGCGCACGCGGTCAAGGATAGCCGGGAGATCAC
CGAATTCGGCGGCTGGCGCAACTATGTTCGCTCAATTAGTCCGGCGGCGTGA

Upstream 100 bases:

>100_bases
ACGTCACCGCACATGCCGACGGCCGCGTCCGCGATCTGCGCGCCGGCCCCGGTCGCAATGTCAAAGCCGGCGATGTGCTG
GTCATTCTGGAGGAAATCTG

Downstream 100 bases:

>100_bases
AGGACGAGAGGATGCGAGGATTTCTGTCGAAGGCAGCACAGCTTCTTCTGAGGGGTCTCATTGCCAGGACCTGCGCGATC
TCGGCGAACAAGCCTCAAAA

Product: putative amidase

Products: NA

Alternate protein names: Glu-ADT subunit A [H]

Number of amino acids: Translated: 603; Mature: 603

Protein sequence:

>603_residues
MLPAILDLASLRSAYAAGLSPLELVEEIIARCSASDDPAIFITTTPEEELRAAARELVARAPEPNSLPLWGIPFAVKDNI
DVTGLPTTAACPAFAYHPQADAATVARLRAAGALVIGKTNLDQFATGLNGTRSPHGAPRSVFDRNYVSGGSSSGSAVAVA
AGLASFSLGTDTAGSGRVPAAFNNLVGIKPTPGLVPNVGVVPACRSVDVVTVFAATVGDGLAIRRIMEGYDARDPFSRQA
TPASLPATRPRIGVLDGAEREFYGNRQVEALYDAAIERARSLGAVIVPFDYAPFRQAAELLYNGPWVAERLAAVKEFLAT
NGGDFDPTVRAIIEGAKAYDAVDAFEGRYRLEALRQKTKAEWEKVDFLMLPTSPTTYSVEEMQADPIVKNSHFGRYTNFA
NLLDCAAIAIPAGFDADRHLPAGVMLVGPAFTDDALAPFADALHRAAEAGMGKDRHMALPEESRVSPPADDFVPIVVVGA
HLTDMPLNHELTRPGGYRLRTGRTDGSYRLFALSGTIPPKPGLVRDPAFAGEGVEIEVWALPPAAFARFVQNIPAPLGVG
KITLDDASCITGFLCEAHAVKDSREITEFGGWRNYVRSISPAA

Sequences:

>Translated_603_residues
MLPAILDLASLRSAYAAGLSPLELVEEIIARCSASDDPAIFITTTPEEELRAAARELVARAPEPNSLPLWGIPFAVKDNI
DVTGLPTTAACPAFAYHPQADAATVARLRAAGALVIGKTNLDQFATGLNGTRSPHGAPRSVFDRNYVSGGSSSGSAVAVA
AGLASFSLGTDTAGSGRVPAAFNNLVGIKPTPGLVPNVGVVPACRSVDVVTVFAATVGDGLAIRRIMEGYDARDPFSRQA
TPASLPATRPRIGVLDGAEREFYGNRQVEALYDAAIERARSLGAVIVPFDYAPFRQAAELLYNGPWVAERLAAVKEFLAT
NGGDFDPTVRAIIEGAKAYDAVDAFEGRYRLEALRQKTKAEWEKVDFLMLPTSPTTYSVEEMQADPIVKNSHFGRYTNFA
NLLDCAAIAIPAGFDADRHLPAGVMLVGPAFTDDALAPFADALHRAAEAGMGKDRHMALPEESRVSPPADDFVPIVVVGA
HLTDMPLNHELTRPGGYRLRTGRTDGSYRLFALSGTIPPKPGLVRDPAFAGEGVEIEVWALPPAAFARFVQNIPAPLGVG
KITLDDASCITGFLCEAHAVKDSREITEFGGWRNYVRSISPAA
>Mature_603_residues
MLPAILDLASLRSAYAAGLSPLELVEEIIARCSASDDPAIFITTTPEEELRAAARELVARAPEPNSLPLWGIPFAVKDNI
DVTGLPTTAACPAFAYHPQADAATVARLRAAGALVIGKTNLDQFATGLNGTRSPHGAPRSVFDRNYVSGGSSSGSAVAVA
AGLASFSLGTDTAGSGRVPAAFNNLVGIKPTPGLVPNVGVVPACRSVDVVTVFAATVGDGLAIRRIMEGYDARDPFSRQA
TPASLPATRPRIGVLDGAEREFYGNRQVEALYDAAIERARSLGAVIVPFDYAPFRQAAELLYNGPWVAERLAAVKEFLAT
NGGDFDPTVRAIIEGAKAYDAVDAFEGRYRLEALRQKTKAEWEKVDFLMLPTSPTTYSVEEMQADPIVKNSHFGRYTNFA
NLLDCAAIAIPAGFDADRHLPAGVMLVGPAFTDDALAPFADALHRAAEAGMGKDRHMALPEESRVSPPADDFVPIVVVGA
HLTDMPLNHELTRPGGYRLRTGRTDGSYRLFALSGTIPPKPGLVRDPAFAGEGVEIEVWALPPAAFARFVQNIPAPLGVG
KITLDDASCITGFLCEAHAVKDSREITEFGGWRNYVRSISPAA

Specific function: Furnishes a means for formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu- tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activa

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amidase family [H]

Homologues:

Organism=Homo sapiens, GI222831590, Length=501, Percent_Identity=26.3473053892216, Blast_Score=113, Evalue=4e-25,
Organism=Homo sapiens, GI195972892, Length=142, Percent_Identity=34.5070422535211, Blast_Score=92, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17543272, Length=458, Percent_Identity=27.9475982532751, Blast_Score=125, Evalue=7e-29,
Organism=Caenorhabditis elegans, GI17537465, Length=468, Percent_Identity=23.2905982905983, Blast_Score=95, Evalue=9e-20,
Organism=Caenorhabditis elegans, GI17556264, Length=190, Percent_Identity=31.0526315789474, Blast_Score=79, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17538252, Length=141, Percent_Identity=32.6241134751773, Blast_Score=76, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI71990152, Length=195, Percent_Identity=28.2051282051282, Blast_Score=71, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6319685, Length=590, Percent_Identity=41.0169491525424, Blast_Score=401, Evalue=1e-112,
Organism=Saccharomyces cerevisiae, GI6323950, Length=247, Percent_Identity=31.1740890688259, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI24648113, Length=266, Percent_Identity=34.5864661654135, Blast_Score=109, Evalue=5e-24,
Organism=Drosophila melanogaster, GI24652985, Length=411, Percent_Identity=27.2506082725061, Blast_Score=100, Evalue=3e-21,
Organism=Drosophila melanogaster, GI19922090, Length=411, Percent_Identity=27.2506082725061, Blast_Score=100, Evalue=3e-21,
Organism=Drosophila melanogaster, GI24652981, Length=411, Percent_Identity=27.2506082725061, Blast_Score=100, Evalue=3e-21,
Organism=Drosophila melanogaster, GI24652983, Length=411, Percent_Identity=27.2506082725061, Blast_Score=100, Evalue=3e-21,
Organism=Drosophila melanogaster, GI21356731, Length=409, Percent_Identity=23.960880195599, Blast_Score=76, Evalue=8e-14,
Organism=Drosophila melanogaster, GI45550774, Length=203, Percent_Identity=30.5418719211823, Blast_Score=72, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24648435, Length=203, Percent_Identity=30.5418719211823, Blast_Score=72, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24648437, Length=203, Percent_Identity=30.5418719211823, Blast_Score=72, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24648441, Length=129, Percent_Identity=31.7829457364341, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24648439, Length=129, Percent_Identity=31.7829457364341, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000120
- InterPro:   IPR020556
- InterPro:   IPR004412 [H]

Pfam domain/function: PF01425 Amidase [H]

EC number: 6.3.5.-

Molecular weight: Translated: 63976; Mature: 63976

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPAILDLASLRSAYAAGLSPLELVEEIIARCSASDDPAIFITTTPEEELRAAARELVAR
CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHC
APEPNSLPLWGIPFAVKDNIDVTGLPTTAACPAFAYHPQADAATVARLRAAGALVIGKTN
CCCCCCCCEECCCEEEECCCCCCCCCCHHCCCCCEECCCCHHHHHHHHHHCCEEEEECCC
LDQFATGLNGTRSPHGAPRSVFDRNYVSGGSSSGSAVAVAAGLASFSLGTDTAGSGRVPA
HHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCCCH
AFNNLVGIKPTPGLVPNVGVVPACRSVDVVTVFAATVGDGLAIRRIMEGYDARDPFSRQA
HHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHCCHHHHHHHHHCCCCCCCCCCCC
TPASLPATRPRIGVLDGAEREFYGNRQVEALYDAAIERARSLGAVIVPFDYAPFRQAAEL
CCCCCCCCCCCEECCCCCCHHHCCCCHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHH
LYNGPWVAERLAAVKEFLATNGGDFDPTVRAIIEGAKAYDAVDAFEGRYRLEALRQKTKA
HHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
EWEKVDFLMLPTSPTTYSVEEMQADPIVKNSHFGRYTNFANLLDCAAIAIPAGFDADRHL
HHHHEEEEEECCCCCCEEHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
PAGVMLVGPAFTDDALAPFADALHRAAEAGMGKDRHMALPEESRVSPPADDFVPIVVVGA
CCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEC
HLTDMPLNHELTRPGGYRLRTGRTDGSYRLFALSGTIPPKPGLVRDPAFAGEGVEIEVWA
CCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEE
LPPAAFARFVQNIPAPLGVGKITLDDASCITGFLCEAHAVKDSREITEFGGWRNYVRSIS
CCHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
PAA
CCC
>Mature Secondary Structure
MLPAILDLASLRSAYAAGLSPLELVEEIIARCSASDDPAIFITTTPEEELRAAARELVAR
CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHC
APEPNSLPLWGIPFAVKDNIDVTGLPTTAACPAFAYHPQADAATVARLRAAGALVIGKTN
CCCCCCCCEECCCEEEECCCCCCCCCCHHCCCCCEECCCCHHHHHHHHHHCCEEEEECCC
LDQFATGLNGTRSPHGAPRSVFDRNYVSGGSSSGSAVAVAAGLASFSLGTDTAGSGRVPA
HHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCCCH
AFNNLVGIKPTPGLVPNVGVVPACRSVDVVTVFAATVGDGLAIRRIMEGYDARDPFSRQA
HHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHCCHHHHHHHHHCCCCCCCCCCCC
TPASLPATRPRIGVLDGAEREFYGNRQVEALYDAAIERARSLGAVIVPFDYAPFRQAAEL
CCCCCCCCCCCEECCCCCCHHHCCCCHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHH
LYNGPWVAERLAAVKEFLATNGGDFDPTVRAIIEGAKAYDAVDAFEGRYRLEALRQKTKA
HHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
EWEKVDFLMLPTSPTTYSVEEMQADPIVKNSHFGRYTNFANLLDCAAIAIPAGFDADRHL
HHHHEEEEEECCCCCCEEHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
PAGVMLVGPAFTDDALAPFADALHRAAEAGMGKDRHMALPEESRVSPPADDFVPIVVVGA
CCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEC
HLTDMPLNHELTRPGGYRLRTGRTDGSYRLFALSGTIPPKPGLVRDPAFAGEGVEIEVWA
CCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEE
LPPAAFARFVQNIPAPLGVGKITLDDASCITGFLCEAHAVKDSREITEFGGWRNYVRSIS
CCHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
PAA
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA