Click here to switch to the map view.

The map label for this gene is nahR [H]

Identifier: 190894360

GI number: 190894360

Start: 18775

End: 19566

Strand: Reverse

Name: nahR [H]

Synonym: RHECIAT_PC0000020

Alternate gene names: 190894360

Gene position: 19566-18775 (Counterclockwise)

Preceding gene: 190894364

Following gene: 190894356

Centisome position: 1.79

GC content: 63.01

Gene sequence:

>792_bases
ATGATGCCGACGGCGCGCGCCCTCGAATTGCGCCAGCCGATCAGGCAGGCGCTGGCCGGCATGGAAGAGGCATTGGCGAC
GACCGCTGTTTTCGATCCCGCCACCTCGACCCGTTCCTTCATGCTGATCGGATCGGATTACTTCTCGACATTGCTGATGC
CGCCGCTGGCTGCGCGCGTGGCCGAAGCTGCGCCCTCCGTCACCTTGCAGATGATCGATCATGCCTCGTCGGAAGTCTTC
GAGATGCTGCGCGACGGCCGCGCGGATATCGTCATCGACCGATCGCTCGAACCGCCCGAATGGGTTGCGAGCCGCAAGGT
GCTCCAGTCATGGCTGGTCTGCATCGCAAAACAGGGGCATCCGCTTCTTGCCAGCCACGGACTTCGCCCGGGAGACGCCA
TACCGGCAGATCTCTTCTGCGCCGTCCCTCACATTCTGCGCTCCGCCGATGGGAGCCGCACCGGAACGATCGATCCCGCC
CTCGCCCGCCTTGGCCTTGCCCGGCGCGTCATGGTCACGGTGCCACATTTCCAGGCAGTCGCCCTCGCGGTTGAATCGAG
CGAAATGCTGGGAAGCATTCCGGTTCATTTTGCCCGCACCCTGATCGGCCGGCTCAAGCTCGATGTGTTCATGCCGCCGA
TGGAATCGCCGAAAATGGATGTGACCATGTACTGGCTTCGCCGTTTCGACCGCGATCCGGGAAGTGCATGGCTGCGAAGC
GAAATCGCGCACGCGCTCGCCGCGCCGGAGACGCCTTCATTCTCATCATCGGTCGAACGATCCGAGAATTGA

Upstream 100 bases:

>100_bases
AGGCGAGCGGGTCGGCTTATCCCAGCCAGCCGTGAGTTCGGCGCTCGGCAGGTTGCGCGCCTTGTTGGATGACGAATTGT
TCGTCAGGGAAGGCAACCAG

Downstream 100 bases:

>100_bases
TCCGCAGGGACGAAGAGCGTCGCTTCAGGAAAGCGCGACAGTCTCGAACAGCGCCGTCAGCCCGATGCCGCCGCCGATGC
CGATCATGGCGAGCCCGGCT

Product: putative LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MMPTARALELRQPIRQALAGMEEALATTAVFDPATSTRSFMLIGSDYFSTLLMPPLAARVAEAAPSVTLQMIDHASSEVF
EMLRDGRADIVIDRSLEPPEWVASRKVLQSWLVCIAKQGHPLLASHGLRPGDAIPADLFCAVPHILRSADGSRTGTIDPA
LARLGLARRVMVTVPHFQAVALAVESSEMLGSIPVHFARTLIGRLKLDVFMPPMESPKMDVTMYWLRRFDRDPGSAWLRS
EIAHALAAPETPSFSSSVERSEN

Sequences:

>Translated_263_residues
MMPTARALELRQPIRQALAGMEEALATTAVFDPATSTRSFMLIGSDYFSTLLMPPLAARVAEAAPSVTLQMIDHASSEVF
EMLRDGRADIVIDRSLEPPEWVASRKVLQSWLVCIAKQGHPLLASHGLRPGDAIPADLFCAVPHILRSADGSRTGTIDPA
LARLGLARRVMVTVPHFQAVALAVESSEMLGSIPVHFARTLIGRLKLDVFMPPMESPKMDVTMYWLRRFDRDPGSAWLRS
EIAHALAAPETPSFSSSVERSEN
>Mature_263_residues
MMPTARALELRQPIRQALAGMEEALATTAVFDPATSTRSFMLIGSDYFSTLLMPPLAARVAEAAPSVTLQMIDHASSEVF
EMLRDGRADIVIDRSLEPPEWVASRKVLQSWLVCIAKQGHPLLASHGLRPGDAIPADLFCAVPHILRSADGSRTGTIDPA
LARLGLARRVMVTVPHFQAVALAVESSEMLGSIPVHFARTLIGRLKLDVFMPPMESPKMDVTMYWLRRFDRDPGSAWLRS
EIAHALAAPETPSFSSSVERSEN

Specific function: Regulates the expression of the naphthalene (nahA-F) and salicylate (nahG-M) metabolism genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 825 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 28782; Mature: 28782

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMPTARALELRQPIRQALAGMEEALATTAVFDPATSTRSFMLIGSDYFSTLLMPPLAARV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHCCHHHHHH
AEAAPSVTLQMIDHASSEVFEMLRDGRADIVIDRSLEPPEWVASRKVLQSWLVCIAKQGH
HHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCC
PLLASHGLRPGDAIPADLFCAVPHILRSADGSRTGTIDPALARLGLARRVMVTVPHFQAV
CHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHEEECCCHHHH
ALAVESSEMLGSIPVHFARTLIGRLKLDVFMPPMESPKMDVTMYWLRRFDRDPGSAWLRS
HHHHHHHHHHCCCHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHCCCCCHHHHHH
EIAHALAAPETPSFSSSVERSEN
HHHHHHCCCCCCCCCHHHHCCCC
>Mature Secondary Structure
MMPTARALELRQPIRQALAGMEEALATTAVFDPATSTRSFMLIGSDYFSTLLMPPLAARV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHCCHHHHHH
AEAAPSVTLQMIDHASSEVFEMLRDGRADIVIDRSLEPPEWVASRKVLQSWLVCIAKQGH
HHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCC
PLLASHGLRPGDAIPADLFCAVPHILRSADGSRTGTIDPALARLGLARRVMVTVPHFQAV
CHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHEEECCCHHHH
ALAVESSEMLGSIPVHFARTLIGRLKLDVFMPPMESPKMDVTMYWLRRFDRDPGSAWLRS
HHHHHHHHHHCCCHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHCCCCCHHHHHH
EIAHALAAPETPSFSSSVERSEN
HHHHHHCCCCCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2703465; 2848005 [H]