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The map label for this gene is dapD [H]

Identifier: 190571088

GI number: 190571088

Start: 752696

End: 753538

Strand: Direct

Name: dapD [H]

Synonym: WPa_0683

Alternate gene names: 190571088

Gene position: 752696-753538 (Clockwise)

Preceding gene: 190571085

Following gene: 190571091

Centisome position: 50.77

GC content: 35.11

Gene sequence:

>843_bases
ATGTATATAATAAATGAAAAATTTGCAACTAAAAAATTACAAGATGAGATAGAAAATATTTGGAAAGATAAAGAAAAACT
TAACGACTATAATCTAAAACACGAAGCAAGATTAATAATCAAAGAGGTAATTGAGTTACTTGACAGTGGTAAAATTAGAG
TAGCAGAAAAGCTATCAAGTGGAGAATGGATAGTACATAAGTGGATAAAGCAGTCAATATTATTACATTTCCTCACTGAG
GAAAGCAAAATAATAGACAACACCAATTGCTGGTTTGACAAAATCGGTAGTAAGTTTAGTGAATGGAATGAAGAAAAATT
TTACCATTCAAAAATTAGAGCAGTTCCTGGATGTTTTGTCCGCCAATCTGCTTACATAGGTAAAAATGTTGTTCTAATGC
CAAGCTTTATCAACGTTGGTGCATACATTGATTCTGGCACAATGATAGACACTTGGTCAACAGTTGGTAGTTGTGCACAA
ATAGGAAAAAACTGTCATATTTCCGGTGGAGTGGGAATAGGCGGAGTTCTCGAGCCTATTCAAGCTTCTCCAGTCATTAT
AGAGGATAATTGCTTTATTGGAGCGCGCAGTGAGGTAGCCGAAGGTGTTATAATAAGAGAAGGATCAGTCCTTAGTATGG
GGGTGTTTATTGGAGCATCAACAAAAATCATTGATAGGGAAACGAACAAAGTATTTTACGGTGAAGTGCCACCTTATTCT
GTAGTCGTGCCAGGATCTACTCGATCTAGAAATAATGTCTCAACCTATTGTGCAGTTATAGTAAAAAAAGTGGACGAGAA
GACGAGATCAAAAACTTCTATAAATGAAATATTGAGAATCTAA

Upstream 100 bases:

>100_bases
TCACCTATTTGCCCACGAGATACTAAGTAAGTTTTAGTACAATTATGACATTGTATTTTCATAGTGCTTACGTATAAAAT
AATATAAATTTGATATCAAT

Downstream 100 bases:

>100_bases
CTACTTACCGTCACTTTTTTTATCATTATTACTAACTATAGTAATGGCATATGCGCATAATTCTGGAAAAGAGATCCCGT
TTTCTTGAGACAACTTGTAT

Product: 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase

Products: NA

Alternate protein names: Tetrahydrodipicolinate N-succinyltransferase; THDP succinyltransferase; THP succinyltransferase; Tetrahydropicolinate succinylase [H]

Number of amino acids: Translated: 280; Mature: 280

Protein sequence:

>280_residues
MYIINEKFATKKLQDEIENIWKDKEKLNDYNLKHEARLIIKEVIELLDSGKIRVAEKLSSGEWIVHKWIKQSILLHFLTE
ESKIIDNTNCWFDKIGSKFSEWNEEKFYHSKIRAVPGCFVRQSAYIGKNVVLMPSFINVGAYIDSGTMIDTWSTVGSCAQ
IGKNCHISGGVGIGGVLEPIQASPVIIEDNCFIGARSEVAEGVIIREGSVLSMGVFIGASTKIIDRETNKVFYGEVPPYS
VVVPGSTRSRNNVSTYCAVIVKKVDEKTRSKTSINEILRI

Sequences:

>Translated_280_residues
MYIINEKFATKKLQDEIENIWKDKEKLNDYNLKHEARLIIKEVIELLDSGKIRVAEKLSSGEWIVHKWIKQSILLHFLTE
ESKIIDNTNCWFDKIGSKFSEWNEEKFYHSKIRAVPGCFVRQSAYIGKNVVLMPSFINVGAYIDSGTMIDTWSTVGSCAQ
IGKNCHISGGVGIGGVLEPIQASPVIIEDNCFIGARSEVAEGVIIREGSVLSMGVFIGASTKIIDRETNKVFYGEVPPYS
VVVPGSTRSRNNVSTYCAVIVKKVDEKTRSKTSINEILRI
>Mature_280_residues
MYIINEKFATKKLQDEIENIWKDKEKLNDYNLKHEARLIIKEVIELLDSGKIRVAEKLSSGEWIVHKWIKQSILLHFLTE
ESKIIDNTNCWFDKIGSKFSEWNEEKFYHSKIRAVPGCFVRQSAYIGKNVVLMPSFINVGAYIDSGTMIDTWSTVGSCAQ
IGKNCHISGGVGIGGVLEPIQASPVIIEDNCFIGARSEVAEGVIIREGSVLSMGVFIGASTKIIDRETNKVFYGEVPPYS
VVVPGSTRSRNNVSTYCAVIVKKVDEKTRSKTSINEILRI

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; fourth step. [C]

COG id: COG2171

COG function: function code E; Tetrahydrodipicolinate N-succinyltransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transferase hexapeptide repeat family [H]

Homologues:

Organism=Escherichia coli, GI1786362, Length=271, Percent_Identity=55.719557195572, Blast_Score=299, Evalue=2e-82,

Paralogues:

None

Copy number: 420 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005664
- InterPro:   IPR023180
- InterPro:   IPR011004 [H]

Pfam domain/function: NA

EC number: =2.3.1.117 [H]

Molecular weight: Translated: 31397; Mature: 31397

Theoretical pI: Translated: 8.11; Mature: 8.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYIINEKFATKKLQDEIENIWKDKEKLNDYNLKHEARLIIKEVIELLDSGKIRVAEKLSS
CEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC
GEWIVHKWIKQSILLHFLTEESKIIDNTNCWFDKIGSKFSEWNEEKFYHSKIRAVPGCFV
CCHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCHHH
RQSAYIGKNVVLMPSFINVGAYIDSGTMIDTWSTVGSCAQIGKNCHISGGVGIGGVLEPI
HHHHHCCCCEEEECCHHCCCEEECCCCEEECHHHHHHHHHHCCCEEECCCCCCCCHHCCC
QASPVIIEDNCFIGARSEVAEGVIIREGSVLSMGVFIGASTKIIDRETNKVFYGEVPPYS
CCCCEEEECCCEECCHHHHHCCEEEECCCEEEEEEEECCCCEEEECCCCEEEECCCCCEE
VVVPGSTRSRNNVSTYCAVIVKKVDEKTRSKTSINEILRI
EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MYIINEKFATKKLQDEIENIWKDKEKLNDYNLKHEARLIIKEVIELLDSGKIRVAEKLSS
CEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC
GEWIVHKWIKQSILLHFLTEESKIIDNTNCWFDKIGSKFSEWNEEKFYHSKIRAVPGCFV
CCHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCHHH
RQSAYIGKNVVLMPSFINVGAYIDSGTMIDTWSTVGSCAQIGKNCHISGGVGIGGVLEPI
HHHHHCCCCEEEECCHHCCCEEECCCCEEECHHHHHHHHHHCCCEEECCCCCCCCHHCCC
QASPVIIEDNCFIGARSEVAEGVIIREGSVLSMGVFIGASTKIIDRETNKVFYGEVPPYS
CCCCEEEECCCEECCHHHHHCCEEEECCCEEEEEEEECCCCEEEECCCCEEEECCCCCEE
VVVPGSTRSRNNVSTYCAVIVKKVDEKTRSKTSINEILRI
EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA