Click here to switch to the map view.

The map label for this gene is 189499201

Identifier: 189499201

GI number: 189499201

Start: 209906

End: 211366

Strand: Direct

Name: 189499201

Synonym: Cphamn1_0217

Alternate gene names: NA

Gene position: 209906-211366 (Clockwise)

Preceding gene: 189499200

Following gene: 189499202

Centisome position: 7.67

GC content: 51.54

Gene sequence:

>1461_bases
ATGAGCAGTCTCATTGACGAGATCAAGGCCGAAGCGTTTAAGCCGGGGCCAGAAAAAAAAGATGTTTTGGTACCGTCATT
TTTGTCACTTTTGTCACCAAATGAGATTCTTGAGCAGCTCCTTGAGCAGATCGAGCCGGTCAATTTTACCGAATTCACGG
GTGGCGGAGAGGTTCGAGCAGTCCATCACCGGATTTATGCTGTCAAAAGCGTTGTCCGTTTGGCTGAGCGCAAGAACTGG
GGGTTATGCAAAAGAAACGGGGCGGTTTATGTTTTCACTGGGTCGCATTGGCGGCGGGTCGAGGATGACGATATGGAAGC
GTTCTTGGGTACGGCGGCGCTCCGGACAGGCGTTCCGAGGTATCGAGCCGATGATTACAAATTCCGGGCAGAGCTGTTAA
AGCAGTTCCACAGCGAAGCACACTTGACACAGCCAGAGCCAGATGCGGGGCGAACGCTTATCAACCTGCAAAACGGGACA
TTTGAGATCACGCAGCACGGCCAGCAGTTACGAGAGTTCCGGCGCGCGGACTTTCTGACGCACGTTTTACCATTCGAGTG
CAGGGAGGATGCTAAGGCGCCTTTGTTCCGGTCGTTCATTGAGAGAGTTTTACCGGATCCGGATTCGCAGCGAGTTTTAG
CGGAGTTCGTTGGTTACGTGTTCATCCGTGGGTTGAAACTCGAAAAGGCGCTCATGCTTTACGGCGGCGGCGCGAACGGG
AAGAGCGTCTTTTTCGACATACTTCTTGCCCTGCTTGGGTCAGACAATGCCAGCAGCTACAGCCTTGCCAGCTTGACCGA
CAGCCGAAATACTTACTACCGGGCGATGCTTGCGGATAAGCTTGTAAATTACGCTTCTGAGATTAACAGTAAGGTCGAAG
CAAGCATATTCAAACAGCTGGTTTCAGGTGAACCGGTAGAGGCGAGGTTACCGTACGGGAAACCCTTTATTCTGAAGGAA
TACGCGAAACTAATTTTCAATGCGAACGAACTGCCGAGAGATGTCGAACACACAAACGCATATTTTCGGCGGTTCCTGAT
TATTCCGTTCACGGTTACGATCCCTGAGCGCGAGCAGGATAAAGAATTAGCCGGCAAGATAATTGCCTCAGAATTGCCAG
GGGTTTTCAACTGGGCGTTAGAAGGCTTGCGGCGGTTACTCCAACAGAAAAACCTCAGCAATTGCGATGCCGCACGGCAC
GCGGTCGATCAGTATAAACGTGAAAGTGATTCTGTTCAAATGTTCGTTGACGGTCGAGCGCTTGAGCCTTCAGGTGTTGG
CTTCGAGACACTGGGAGACCTCTATAAAGACTATAAGAGCTTTTGTGCTGATGACGGTTACCGAGGATTAAATAAGCGGA
ATTTCTCAAAGCGTTTGGAGGCTTGCGGGTTTGAGAAGGTCAAGAGGGGGATCGGGTGGGGGTTCGGTTGTTCCCGGCGC
GCGGATGAGGAGCCGTTTTAG

Upstream 100 bases:

>100_bases
CTGATGGGCGAGACCAGCGGGAACAGCCTCAAGATAATCAGCCTGCCGATAATTCCCAAACCTTCGACCAAATCAGCAAA
TTCATGGGAGAGCTTGGATT

Downstream 100 bases:

>100_bases
TGACAAAAGTGACAAAAATGACAGTGGTAAAACAATCTTTTTTTTTCTGAGCGTAATGTTTGAGTACCGTTATCACTTGG
AGCGGGGCGGATCAAAGCAA

Product: P4 family phage/plasmid primase

Products: NA

Alternate protein names: Phage/Plasmid Primase P4 Family; Primase; DNA Primase; DNA Primase/Helicase; Phage Primase; Phage/Plasmid Primase; Phage DNA Polymerase; Nucleoside Triphosphatase D5 Family; Phage/Plasmid Primase P4-Like; Phage DNA Primase; RepA Protein; Phage-Like Protein; Phage-Associated Protein; Phage Associated DNA Primase; Phage/Plasmid DNA Primase; Helicase-Like Protein; ATPase-Like Protein; Bacteriophage-Related Protein; Phage/Plasmid Primase P4 C-Terminal Protein; DNA-Polymerase Or DNA-Primase; Bacteriophage Related Protein; Prophage; Plasmid/Phage Primase; Bacteriophage Protein; DNA Primase Domain-Containing Protein; Replication Protein; Phage Replication Protein; D5 N-Terminal Domain Family Protein; Phage/Plasmid Primase P4 C-Terminal; DNA Primase Phage/Plasmid; Phage/Plasmid Primase P4-Like Protein

Number of amino acids: Translated: 486; Mature: 485

Protein sequence:

>486_residues
MSSLIDEIKAEAFKPGPEKKDVLVPSFLSLLSPNEILEQLLEQIEPVNFTEFTGGGEVRAVHHRIYAVKSVVRLAERKNW
GLCKRNGAVYVFTGSHWRRVEDDDMEAFLGTAALRTGVPRYRADDYKFRAELLKQFHSEAHLTQPEPDAGRTLINLQNGT
FEITQHGQQLREFRRADFLTHVLPFECREDAKAPLFRSFIERVLPDPDSQRVLAEFVGYVFIRGLKLEKALMLYGGGANG
KSVFFDILLALLGSDNASSYSLASLTDSRNTYYRAMLADKLVNYASEINSKVEASIFKQLVSGEPVEARLPYGKPFILKE
YAKLIFNANELPRDVEHTNAYFRRFLIIPFTVTIPEREQDKELAGKIIASELPGVFNWALEGLRRLLQQKNLSNCDAARH
AVDQYKRESDSVQMFVDGRALEPSGVGFETLGDLYKDYKSFCADDGYRGLNKRNFSKRLEACGFEKVKRGIGWGFGCSRR
ADEEPF

Sequences:

>Translated_486_residues
MSSLIDEIKAEAFKPGPEKKDVLVPSFLSLLSPNEILEQLLEQIEPVNFTEFTGGGEVRAVHHRIYAVKSVVRLAERKNW
GLCKRNGAVYVFTGSHWRRVEDDDMEAFLGTAALRTGVPRYRADDYKFRAELLKQFHSEAHLTQPEPDAGRTLINLQNGT
FEITQHGQQLREFRRADFLTHVLPFECREDAKAPLFRSFIERVLPDPDSQRVLAEFVGYVFIRGLKLEKALMLYGGGANG
KSVFFDILLALLGSDNASSYSLASLTDSRNTYYRAMLADKLVNYASEINSKVEASIFKQLVSGEPVEARLPYGKPFILKE
YAKLIFNANELPRDVEHTNAYFRRFLIIPFTVTIPEREQDKELAGKIIASELPGVFNWALEGLRRLLQQKNLSNCDAARH
AVDQYKRESDSVQMFVDGRALEPSGVGFETLGDLYKDYKSFCADDGYRGLNKRNFSKRLEACGFEKVKRGIGWGFGCSRR
ADEEPF
>Mature_485_residues
SSLIDEIKAEAFKPGPEKKDVLVPSFLSLLSPNEILEQLLEQIEPVNFTEFTGGGEVRAVHHRIYAVKSVVRLAERKNWG
LCKRNGAVYVFTGSHWRRVEDDDMEAFLGTAALRTGVPRYRADDYKFRAELLKQFHSEAHLTQPEPDAGRTLINLQNGTF
EITQHGQQLREFRRADFLTHVLPFECREDAKAPLFRSFIERVLPDPDSQRVLAEFVGYVFIRGLKLEKALMLYGGGANGK
SVFFDILLALLGSDNASSYSLASLTDSRNTYYRAMLADKLVNYASEINSKVEASIFKQLVSGEPVEARLPYGKPFILKEY
AKLIFNANELPRDVEHTNAYFRRFLIIPFTVTIPEREQDKELAGKIIASELPGVFNWALEGLRRLLQQKNLSNCDAARHA
VDQYKRESDSVQMFVDGRALEPSGVGFETLGDLYKDYKSFCADDGYRGLNKRNFSKRLEACGFEKVKRGIGWGFGCSRRA
DEEPF

Specific function: Unknown

COG id: COG3378

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 55156; Mature: 55025

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSLIDEIKAEAFKPGPEKKDVLVPSFLSLLSPNEILEQLLEQIEPVNFTEFTGGGEVRA
CCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHCCCCCCEEECCCCCHHH
VHHRIYAVKSVVRLAERKNWGLCKRNGAVYVFTGSHWRRVEDDDMEAFLGTAALRTGVPR
HHHHHHHHHHHHHHHHCCCCCCEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCC
YRADDYKFRAELLKQFHSEAHLTQPEPDAGRTLINLQNGTFEITQHGQQLREFRRADFLT
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCEEHHHHHHHHHHHHHHHHHHH
HVLPFECREDAKAPLFRSFIERVLPDPDSQRVLAEFVGYVFIRGLKLEKALMLYGGGANG
HHCCHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHEEEEEEECCCCC
KSVFFDILLALLGSDNASSYSLASLTDSRNTYYRAMLADKLVNYASEINSKVEASIFKQL
HHHHHHHHHHHHCCCCCCCEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VSGEPVEARLPYGKPFILKEYAKLIFNANELPRDVEHTNAYFRRFLIIPFTVTIPEREQD
HCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHEEEEEEEECCCCCCH
KELAGKIIASELPGVFNWALEGLRRLLQQKNLSNCDAARHAVDQYKRESDSVQMFVDGRA
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEECCCC
LEPSGVGFETLGDLYKDYKSFCADDGYRGLNKRNFSKRLEACGFEKVKRGIGWGFGCSRR
CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCHHHHHHHCCCCCCCCCC
ADEEPF
CCCCCC
>Mature Secondary Structure 
SSLIDEIKAEAFKPGPEKKDVLVPSFLSLLSPNEILEQLLEQIEPVNFTEFTGGGEVRA
CHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHCCCCCCEEECCCCCHHH
VHHRIYAVKSVVRLAERKNWGLCKRNGAVYVFTGSHWRRVEDDDMEAFLGTAALRTGVPR
HHHHHHHHHHHHHHHHCCCCCCEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCC
YRADDYKFRAELLKQFHSEAHLTQPEPDAGRTLINLQNGTFEITQHGQQLREFRRADFLT
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCEEHHHHHHHHHHHHHHHHHHH
HVLPFECREDAKAPLFRSFIERVLPDPDSQRVLAEFVGYVFIRGLKLEKALMLYGGGANG
HHCCHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHEEEEEEECCCCC
KSVFFDILLALLGSDNASSYSLASLTDSRNTYYRAMLADKLVNYASEINSKVEASIFKQL
HHHHHHHHHHHHCCCCCCCEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VSGEPVEARLPYGKPFILKEYAKLIFNANELPRDVEHTNAYFRRFLIIPFTVTIPEREQD
HCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHEEEEEEEECCCCCCH
KELAGKIIASELPGVFNWALEGLRRLLQQKNLSNCDAARHAVDQYKRESDSVQMFVDGRA
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEECCCC
LEPSGVGFETLGDLYKDYKSFCADDGYRGLNKRNFSKRLEACGFEKVKRGIGWGFGCSRR
CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCHHHHHHHCCCCCCCCCC
ADEEPF
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA