BacMap

Definition	Geobacter lovleyi SZ chromosome, complete genome.
Accession	NC_010814
Length	3,917,761

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The map label for this gene is ybjZ [C]

Identifier: 189424533

GI number: 189424533

Start: 1537862

End: 1538590

Strand: Reverse

Name: ybjZ [C]

Synonym: Glov_1471

Alternate gene names: 189424533

Gene position: 1538590-1537862 (Counterclockwise)

Preceding gene: 189424534

Following gene: 189424532

Centisome position: 39.27

GC content: 58.85

Gene sequence:

>729_bases
ATGATTGCACTGAACCAGGTCACCAAAAACTTCGCCATCGGCCCGGCCACCAGCTTTACCGCGGTGGATAACGTGAGCCT
GACCATTACACGCAGCAGCATGACGATCCTGAAAGGCCCCAGCGGATCAGGCAAGACCACCCTGCTGGCCTTGATCGGCT
GCATGACCAGACCAAGTTCGGGGCGGATCATGCTGCAGGGGGTAGAGACCAGCTTCTTTCAGGCAAGCGAGTCAGCTGAG
GGGTTTGACAGTTCCAGCCTGCCGGAGCGGTTCCTGACCGAGATCCGCCGTTCCACCTTTGGTTTCATCTTTCAGCAGTT
TAACCTGATCAAGGGGATCAGCGCCCTGCAGAACATCATGCTGCCGGCCTACCCCACCGGCGAACAGCAGCCGGTGGTCA
AGCAGCGGGCACTGGGGCTGATGGAACAGTTTGATCTGCTGCGTCATCGTAACTCGCCGGTGGAATGGCTCTCCGGCGGG
GAACTGCAGCGGGTTGCCATTGCCCGCGCCCTGATCAACAACCCGATCGCCATTATTGCCGATGAGCCGACCGCCCACCT
GGACAGTCAACTTTCTCAAGCATTCATGGAGAGCATCGGCCAGCTGAAAGACAGTGGCAAGACCGTACTGATCGCCAGCC
ATGACCCGATTGTCTACAGTTCGCCATTGGCAGACCAGGTGCTGGAGATGCGTGATGGCCGGATTGTCCGGCAGGAACTG
TTGCCGTGA

Upstream 100 bases:

>100_bases
TGCTGTTTGTGCTTGCAGTGCTGCCCTACACCGCGGCCACCATTATCCCTGCCTGGCTGGCAGCCACCATTGCCCCTGAT
GCAGCCATGAGGTCATAACC

Downstream 100 bases:

>100_bases
TCCAGCACCCGGCCATACTGGCGCTGATGACCGCCTCGCTGATTGTCAGCGGCCTGCTGCTCTATGCCGGCTGGTTTGGC
ATCCGGATCCTGAAGAACTG

Product: ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MIALNQVTKNFAIGPATSFTAVDNVSLTITRSSMTILKGPSGSGKTTLLALIGCMTRPSSGRIMLQGVETSFFQASESAE
GFDSSSLPERFLTEIRRSTFGFIFQQFNLIKGISALQNIMLPAYPTGEQQPVVKQRALGLMEQFDLLRHRNSPVEWLSGG
ELQRVAIARALINNPIAIIADEPTAHLDSQLSQAFMESIGQLKDSGKTVLIASHDPIVYSSPLADQVLEMRDGRIVRQEL
LP

Sequences:

>Translated_242_residues
MIALNQVTKNFAIGPATSFTAVDNVSLTITRSSMTILKGPSGSGKTTLLALIGCMTRPSSGRIMLQGVETSFFQASESAE
GFDSSSLPERFLTEIRRSTFGFIFQQFNLIKGISALQNIMLPAYPTGEQQPVVKQRALGLMEQFDLLRHRNSPVEWLSGG
ELQRVAIARALINNPIAIIADEPTAHLDSQLSQAFMESIGQLKDSGKTVLIASHDPIVYSSPLADQVLEMRDGRIVRQEL
LP
>Mature_242_residues
MIALNQVTKNFAIGPATSFTAVDNVSLTITRSSMTILKGPSGSGKTTLLALIGCMTRPSSGRIMLQGVETSFFQASESAE
GFDSSSLPERFLTEIRRSTFGFIFQQFNLIKGISALQNIMLPAYPTGEQQPVVKQRALGLMEQFDLLRHRNSPVEWLSGG
ELQRVAIARALINNPIAIIADEPTAHLDSQLSQAFMESIGQLKDSGKTVLIASHDPIVYSSPLADQVLEMRDGRIVRQEL
LP

Specific function: Unknown

COG id: COG1136

COG function: function code V; ABC-type antimicrobial peptide transport system, ATPase component

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI171184400, Length=202, Percent_Identity=32.6732673267327, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI156105685, Length=239, Percent_Identity=26.7782426778243, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI105990541, Length=217, Percent_Identity=23.963133640553, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI116734710, Length=213, Percent_Identity=24.8826291079812, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI215820660, Length=219, Percent_Identity=24.6575342465753, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI20143975, Length=219, Percent_Identity=24.6575342465753, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI9955963, Length=242, Percent_Identity=28.9256198347107, Blast_Score=64, Evalue=8e-11,
Organism=Escherichia coli, GI1787105, Length=238, Percent_Identity=36.1344537815126, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI87081834, Length=237, Percent_Identity=33.3333333333333, Blast_Score=126, Evalue=1e-30,
Organism=Escherichia coli, GI1789873, Length=236, Percent_Identity=33.0508474576271, Blast_Score=113, Evalue=9e-27,
Organism=Escherichia coli, GI1786398, Length=240, Percent_Identity=32.0833333333333, Blast_Score=109, Evalue=1e-25,
Organism=Escherichia coli, GI1789672, Length=239, Percent_Identity=30.1255230125523, Blast_Score=107, Evalue=5e-25,
Organism=Escherichia coli, GI1787029, Length=236, Percent_Identity=30.9322033898305, Blast_Score=107, Evalue=5e-25,
Organism=Escherichia coli, GI1788225, Length=220, Percent_Identity=33.6363636363636, Blast_Score=107, Evalue=7e-25,
Organism=Escherichia coli, GI1786703, Length=236, Percent_Identity=30.5084745762712, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI1790544, Length=251, Percent_Identity=32.2709163346614, Blast_Score=103, Evalue=8e-24,
Organism=Escherichia coli, GI1786872, Length=237, Percent_Identity=29.535864978903, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI87081709, Length=237, Percent_Identity=30.8016877637131, Blast_Score=100, Evalue=7e-23,
Organism=Escherichia coli, GI1787089, Length=220, Percent_Identity=30.9090909090909, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1790534, Length=235, Percent_Identity=31.9148936170213, Blast_Score=97, Evalue=7e-22,
Organism=Escherichia coli, GI1788761, Length=219, Percent_Identity=31.5068493150685, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1789032, Length=218, Percent_Identity=27.0642201834862, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI87081791, Length=200, Percent_Identity=33, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1788472, Length=222, Percent_Identity=27.9279279279279, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1786319, Length=213, Percent_Identity=27.6995305164319, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1787712, Length=222, Percent_Identity=34.6846846846847, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1787370, Length=216, Percent_Identity=30.5555555555556, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1790467, Length=235, Percent_Identity=26.8085106382979, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1788644, Length=195, Percent_Identity=29.7435897435897, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1788450, Length=242, Percent_Identity=30.1652892561983, Blast_Score=77, Evalue=7e-16,
Organism=Escherichia coli, GI1789593, Length=198, Percent_Identity=31.3131313131313, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI1786253, Length=216, Percent_Identity=31.0185185185185, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788210, Length=223, Percent_Identity=26.0089686098655, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789962, Length=239, Percent_Identity=26.7782426778243, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787164, Length=237, Percent_Identity=28.6919831223629, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI87082268, Length=237, Percent_Identity=24.8945147679325, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1789991, Length=240, Percent_Identity=27.5, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI87081782, Length=214, Percent_Identity=24.2990654205607, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1789864, Length=211, Percent_Identity=25.5924170616114, Blast_Score=70, Evalue=9e-14,
Organism=Escherichia coli, GI87082267, Length=236, Percent_Identity=26.6949152542373, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI48995001, Length=221, Percent_Identity=24.8868778280543, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI48994883, Length=238, Percent_Identity=29.8319327731092, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788506, Length=232, Percent_Identity=31.0344827586207, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1786563, Length=216, Percent_Identity=27.3148148148148, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788897, Length=220, Percent_Identity=27.7272727272727, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI48994997, Length=246, Percent_Identity=28.0487804878049, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1789586, Length=228, Percent_Identity=32.8947368421053, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1787548, Length=253, Percent_Identity=29.2490118577075, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI1787500, Length=235, Percent_Identity=27.6595744680851, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1789963, Length=241, Percent_Identity=26.5560165975104, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1787759, Length=226, Percent_Identity=30.5309734513274, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787143, Length=233, Percent_Identity=26.6094420600858, Blast_Score=63, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI115534520, Length=238, Percent_Identity=27.7310924369748, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI115533592, Length=200, Percent_Identity=30, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71983523, Length=224, Percent_Identity=26.7857142857143, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17538654, Length=222, Percent_Identity=28.3783783783784, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71983516, Length=224, Percent_Identity=26.7857142857143, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71983510, Length=224, Percent_Identity=26.7857142857143, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI193208177, Length=235, Percent_Identity=27.2340425531915, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17567265, Length=226, Percent_Identity=26.5486725663717, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI25146777, Length=228, Percent_Identity=23.6842105263158, Blast_Score=64, Evalue=9e-11,
Organism=Drosophila melanogaster, GI28574744, Length=210, Percent_Identity=28.5714285714286, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI85724864, Length=223, Percent_Identity=28.2511210762332, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24580555, Length=223, Percent_Identity=28.2511210762332, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI85816269, Length=227, Percent_Identity=28.6343612334802, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24580553, Length=227, Percent_Identity=28.6343612334802, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24641565, Length=223, Percent_Identity=29.1479820627803, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24643674, Length=213, Percent_Identity=24.8826291079812, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI17647959, Length=230, Percent_Identity=26.9565217391304, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI85724858, Length=208, Percent_Identity=29.8076923076923, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI85724856, Length=208, Percent_Identity=29.8076923076923, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24580547, Length=208, Percent_Identity=29.8076923076923, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24580551, Length=208, Percent_Identity=29.8076923076923, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24580549, Length=208, Percent_Identity=29.8076923076923, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24580545, Length=208, Percent_Identity=29.8076923076923, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI281363262, Length=223, Percent_Identity=26.457399103139, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24653245, Length=223, Percent_Identity=26.457399103139, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24650853, Length=220, Percent_Identity=26.8181818181818, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI24650855, Length=220, Percent_Identity=26.8181818181818, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI24666092, Length=215, Percent_Identity=25.5813953488372, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI23397593, Length=229, Percent_Identity=32.3144104803493, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI281362751, Length=219, Percent_Identity=26.9406392694064, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 26407; Mature: 26407

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIALNQVTKNFAIGPATSFTAVDNVSLTITRSSMTILKGPSGSGKTTLLALIGCMTRPSS
CCCHHHHHHHCCCCCCCCEEEECCEEEEEEECCEEEEECCCCCCHHHHHHHHHHHCCCCC
GRIMLQGVETSFFQASESAEGFDSSSLPERFLTEIRRSTFGFIFQQFNLIKGISALQNIM
CCEEEEECCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LPAYPTGEQQPVVKQRALGLMEQFDLLRHRNSPVEWLSGGELQRVAIARALINNPIAIIA
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEE
DEPTAHLDSQLSQAFMESIGQLKDSGKTVLIASHDPIVYSSPLADQVLEMRDGRIVRQEL
CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEECCCHHHHHHHHHCCCHHHHHC
LP
CC
>Mature Secondary Structure
MIALNQVTKNFAIGPATSFTAVDNVSLTITRSSMTILKGPSGSGKTTLLALIGCMTRPSS
CCCHHHHHHHCCCCCCCCEEEECCEEEEEEECCEEEEECCCCCCHHHHHHHHHHHCCCCC
GRIMLQGVETSFFQASESAEGFDSSSLPERFLTEIRRSTFGFIFQQFNLIKGISALQNIM
CCEEEEECCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LPAYPTGEQQPVVKQRALGLMEQFDLLRHRNSPVEWLSGGELQRVAIARALINNPIAIIA
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEE
DEPTAHLDSQLSQAFMESIGQLKDSGKTVLIASHDPIVYSSPLADQVLEMRDGRIVRQEL
CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEECCCHHHHHHHHHCCCHHHHHC
LP
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8688087; 11402022; 12150914 [H]