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The map label for this gene is xerC [H]

Identifier: 189424492

GI number: 189424492

Start: 1473385

End: 1474650

Strand: Reverse

Name: xerC [H]

Synonym: Glov_1428

Alternate gene names: 189424492

Gene position: 1474650-1473385 (Counterclockwise)

Preceding gene: 189424496

Following gene: 189424490

Centisome position: 37.64

GC content: 46.84

Gene sequence:

>1266_bases
ATGAAAGAAAACATTGGTGTTGAGCTGTTGCGAAGCAATAAGGTCAATTCTAAAGAAAAGACTTTTGAAATCAACGATAC
AAAGCTCAAAGGATTCACGCTTAAGATTTATCCTGACACGGTCTCCAAAAAAGGTGAAATAATTCCTGGAGCAAAAACGT
ATCTTGTTCGCTATAGACTGCCAGGTGGTAAACAATCACGGATCATTATCGGCAGACACACTTTATATACACCAGCCCAG
GCGCGAGATAAAGCTGAAAAAATTCTTCGCAATATCAAAGACGGTATAAACCCGAAAGTTGAAAAGCAGCATCCCAAGGT
GAGTCACACTTTCAAGTCCTTCCTCGAAGATGAATATTCTCCTTGGGCGGAAGCTCAACGAAAAGATGGCAAAGCCACTG
TCAAAAGGCTCAAATCCCGTTTTTCTGATTTCCTTGAACTGCCACTTACGGAAATTACTCCTCTGATCGTCGATAAGTGG
CGTACCGGGCGATTGAAGGACAGCAAACGACCCGCAACATGTAACCGTGATCTCACAGCGATAAAGGCATTCCTCTCAAA
GGCGGTCGAATGGGAACATCTTGAACATCATCCCCTCGCAAAAGTGAAACCGTTAAAAGTCGACAGCGTGGCAAAAGTGC
GCTTCTTGTCTGCCGATGAAGAAAAGCGACTTTTGAAAGCTCTTGATGATCGGGAGGAAGTGGCACGGGCAGAACGGGCA
ACCGCTAACTTGTGGCGCAAGGAGAGAGGTTACCCGTTATATACCGATCTGAACTCTGTCTCATTTGCGGATCACTTGAA
GCCCATGATCCTCGTCTCTCTCAATACCGGCATACGTTGGGGAGAACTTGCCAGCTTGGCCTGGGACTCGGTAGATATGA
AAAAGGCACTGGTTACGGTTATTGGCGACAAAGCCAAAAGCGGAAAGACCCGCCATGTCCCCTTGAACAGTATCGCTTTG
AATGCCCTGAAGGACTGGAAAAAGCAATCGAGTGGTGACGTGGTATTTCCGGGCAGGGATGGCAAAAAGACTTTGGACAA
CGTGAACAAGTCATGGAAGGCCGTATTGGATGCTGCTCAGATAAAAAACTTTCGCTGGCACGATATGCGGCACCATTTCG
CAAGCTGGTTGGTGATGGCTGGAGTTGATCTGAATACGGTTCGTGAGCTGCTGGGGCATTCTGATCTGAAAATGACCCTA
CGGTATGCCCATCTTGCACCAGAACATAAAGCTGCTGCAGTTGGACTGCTAGTCAAGAAGAAGTAA

Upstream 100 bases:

>100_bases
ATATTGAGTCTGGTTGCTTGTTTATCATTGTTTGCCGTATTACCCCGTGATATATTCAAAATGTGCTCCATGAGTGCTCC
ATGAAGTTGCAGGGGGTAAT

Downstream 100 bases:

>100_bases
CGGTTTTACCTTGGCAACATCAGAAGATATCTGATCAACTCCACATTTACATCTGTACTGTTCGGTGTTTCTTTCATATG
TACCCGACATGCCGTAGTAA

Product: integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 421; Mature: 421

Protein sequence:

>421_residues
MKENIGVELLRSNKVNSKEKTFEINDTKLKGFTLKIYPDTVSKKGEIIPGAKTYLVRYRLPGGKQSRIIIGRHTLYTPAQ
ARDKAEKILRNIKDGINPKVEKQHPKVSHTFKSFLEDEYSPWAEAQRKDGKATVKRLKSRFSDFLELPLTEITPLIVDKW
RTGRLKDSKRPATCNRDLTAIKAFLSKAVEWEHLEHHPLAKVKPLKVDSVAKVRFLSADEEKRLLKALDDREEVARAERA
TANLWRKERGYPLYTDLNSVSFADHLKPMILVSLNTGIRWGELASLAWDSVDMKKALVTVIGDKAKSGKTRHVPLNSIAL
NALKDWKKQSSGDVVFPGRDGKKTLDNVNKSWKAVLDAAQIKNFRWHDMRHHFASWLVMAGVDLNTVRELLGHSDLKMTL
RYAHLAPEHKAAAVGLLVKKK

Sequences:

>Translated_421_residues
MKENIGVELLRSNKVNSKEKTFEINDTKLKGFTLKIYPDTVSKKGEIIPGAKTYLVRYRLPGGKQSRIIIGRHTLYTPAQ
ARDKAEKILRNIKDGINPKVEKQHPKVSHTFKSFLEDEYSPWAEAQRKDGKATVKRLKSRFSDFLELPLTEITPLIVDKW
RTGRLKDSKRPATCNRDLTAIKAFLSKAVEWEHLEHHPLAKVKPLKVDSVAKVRFLSADEEKRLLKALDDREEVARAERA
TANLWRKERGYPLYTDLNSVSFADHLKPMILVSLNTGIRWGELASLAWDSVDMKKALVTVIGDKAKSGKTRHVPLNSIAL
NALKDWKKQSSGDVVFPGRDGKKTLDNVNKSWKAVLDAAQIKNFRWHDMRHHFASWLVMAGVDLNTVRELLGHSDLKMTL
RYAHLAPEHKAAAVGLLVKKK
>Mature_421_residues
MKENIGVELLRSNKVNSKEKTFEINDTKLKGFTLKIYPDTVSKKGEIIPGAKTYLVRYRLPGGKQSRIIIGRHTLYTPAQ
ARDKAEKILRNIKDGINPKVEKQHPKVSHTFKSFLEDEYSPWAEAQRKDGKATVKRLKSRFSDFLELPLTEITPLIVDKW
RTGRLKDSKRPATCNRDLTAIKAFLSKAVEWEHLEHHPLAKVKPLKVDSVAKVRFLSADEEKRLLKALDDREEVARAERA
TANLWRKERGYPLYTDLNSVSFADHLKPMILVSLNTGIRWGELASLAWDSVDMKKALVTVIGDKAKSGKTRHVPLNSIAL
NALKDWKKQSSGDVVFPGRDGKKTLDNVNKSWKAVLDAAQIKNFRWHDMRHHFASWLVMAGVDLNTVRELLGHSDLKMTL
RYAHLAPEHKAAAVGLLVKKK

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786748, Length=250, Percent_Identity=28, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1789261, Length=155, Percent_Identity=33.5483870967742, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 47882; Mature: 47882

Theoretical pI: Translated: 10.63; Mature: 10.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKENIGVELLRSNKVNSKEKTFEINDTKLKGFTLKIYPDTVSKKGEIIPGAKTYLVRYRL
CCCCCCEEEEECCCCCCCCCEEEECCCEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEC
PGGKQSRIIIGRHTLYTPAQARDKAEKILRNIKDGINPKVEKQHPKVSHTFKSFLEDEYS
CCCCCCEEEEECCEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCC
PWAEAQRKDGKATVKRLKSRFSDFLELPLTEITPLIVDKWRTGRLKDSKRPATCNRDLTA
CHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHCHHHHCCCCCCCCCCCCCCCCCCCHHHH
IKAFLSKAVEWEHLEHHPLAKVKPLKVDSVAKVRFLSADEEKRLLKALDDREEVARAERA
HHHHHHHHHCHHHHCCCCCCCCCCCCCCCHHHEEEECCCHHHHHHHHHCCHHHHHHHHHH
TANLWRKERGYPLYTDLNSVSFADHLKPMILVSLNTGIRWGELASLAWDSVDMKKALVTV
HHHHHHHCCCCCEEECCCCCCHHHCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHHHH
IGDKAKSGKTRHVPLNSIALNALKDWKKQSSGDVVFPGRDGKKTLDNVNKSWKAVLDAAQ
HCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHH
IKNFRWHDMRHHFASWLVMAGVDLNTVRELLGHSDLKMTLRYAHLAPEHKAAAVGLLVKK
HCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHEEEEEEC
K
C
>Mature Secondary Structure
MKENIGVELLRSNKVNSKEKTFEINDTKLKGFTLKIYPDTVSKKGEIIPGAKTYLVRYRL
CCCCCCEEEEECCCCCCCCCEEEECCCEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEC
PGGKQSRIIIGRHTLYTPAQARDKAEKILRNIKDGINPKVEKQHPKVSHTFKSFLEDEYS
CCCCCCEEEEECCEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCC
PWAEAQRKDGKATVKRLKSRFSDFLELPLTEITPLIVDKWRTGRLKDSKRPATCNRDLTA
CHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHCHHHHCCCCCCCCCCCCCCCCCCCHHHH
IKAFLSKAVEWEHLEHHPLAKVKPLKVDSVAKVRFLSADEEKRLLKALDDREEVARAERA
HHHHHHHHHCHHHHCCCCCCCCCCCCCCCHHHEEEECCCHHHHHHHHHCCHHHHHHHHHH
TANLWRKERGYPLYTDLNSVSFADHLKPMILVSLNTGIRWGELASLAWDSVDMKKALVTV
HHHHHHHCCCCCEEECCCCCCHHHCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHHHH
IGDKAKSGKTRHVPLNSIALNALKDWKKQSSGDVVFPGRDGKKTLDNVNKSWKAVLDAAQ
HCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHH
IKNFRWHDMRHHFASWLVMAGVDLNTVRELLGHSDLKMTLRYAHLAPEHKAAAVGLLVKK
HCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHEEEEEEC
K
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA