| Definition | Geobacter lovleyi SZ chromosome, complete genome. |
|---|---|
| Accession | NC_010814 |
| Length | 3,917,761 |
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The map label for this gene is ydjG [H]
Identifier: 189424446
GI number: 189424446
Start: 1418386
End: 1419498
Strand: Reverse
Name: ydjG [H]
Synonym: Glov_1382
Alternate gene names: 189424446
Gene position: 1419498-1418386 (Counterclockwise)
Preceding gene: 189424447
Following gene: 189424444
Centisome position: 36.23
GC content: 55.35
Gene sequence:
>1113_bases ATGAGCGACCCAACCCAACAGACACCGAATACCGTAACCAAACAGTTCCCCTGTGGGTCATGCGGGGCCAAGCTAGAGTT CCATCCCGGCGCAGCCACCCTGAAATGCCCCTACTGCAGCCATGAAAACAAGATCCCTCAGTCTGCAGAAGAGATCAGGG AACTTGATTTTTACGAGTATTTTGCACGGGCAACAGAGCAGGGTGACTCCCAGGAGGTGCAGACGGTCAAGTGCCAGTCC TGCGGCGCCACCTCTACCCTGCAGCCCAATATATCCATGAGTCATTGTCCCTTCTGCGGCACCCAGTTGCAGGCCAAGGC CAAAGCCAGCCGCCTGATCAAGCCGGGGGCGGTTCTGCCGTTCAAAATTCCGAAAAACAAGGCGATGGAGCTGTTTCGAG ACTGGCTGGGCGGGCTCTGGTTCGCCCCCGGCGGCCTGAAGGAACAGGCGGCACGTGATGGCGGCATCAAGGGGATGTAC ATCCCCTACTGGACCTTTGATGCCAAATCAACCACCTGGTATGACGGTGAACGTGGCGAAGATTACTACGAAACAGAACG CTACAGCGAGACCGACGATGACGGCAACTCAGTCACCAGAACCCGCCAGGTACGCCACACCCGCTGGTATCATACCAGCG GCACGGTCTGGCAAAACTTTGATGATGTTATTGTTCAGGCAGGCCGTTCTCTGCCGCCAGAGATCGTTGACGAACTTGAA CCGTGGGATCTGAAGTCGCTTGTGCCTTATCAAGATGCCTATATGAGCGGTTTTCAGGCCGAAGCCTACCAGATTGATCT GGGGGATGGTTTTGAGCGGGCCAAGCAGGAGATGGATAGTGCAATCAGGGCAACCGTAGCGGCGGATATCGGTGGCGATC ACCAGCGGATCAATACGGTACGAACCCAGTTTGACGGCATCACCTTCAAGCATATTCTGCTGCCGGTCTGGATCAGTGCC TACAAGTACGGTGACAAGTCATACCGTTTTTTGATCAACGGCTCCACCGGTGAAGTGCAGGGGGAACGTCCCTGGTCGGT TGCCAAGATAGCCATGACGGTGCTGGCAAGCATCATTGTACTGATATTGATTGCGCTGGTGTTGAAGAAGTAG
Upstream 100 bases:
>100_bases CATGGCAAGTTGGGCAGCAGCCGGCACCCTGGCTGAGCTGGCTCCGGTCTTTGGCGCAGTCCCGCCCCCCATGCCTCCGG CGTAAACCGGGAGATTACGT
Downstream 100 bases:
>100_bases CTACGGCCTTACAAACAGATAGGTGGCAAACTCCTCCCCTATTCTGCTGTCAACAACGCTACATCCCAACCGGATGTAGC GTTGTACTATGTCAAATTTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 370; Mature: 369
Protein sequence:
>370_residues MSDPTQQTPNTVTKQFPCGSCGAKLEFHPGAATLKCPYCSHENKIPQSAEEIRELDFYEYFARATEQGDSQEVQTVKCQS CGATSTLQPNISMSHCPFCGTQLQAKAKASRLIKPGAVLPFKIPKNKAMELFRDWLGGLWFAPGGLKEQAARDGGIKGMY IPYWTFDAKSTTWYDGERGEDYYETERYSETDDDGNSVTRTRQVRHTRWYHTSGTVWQNFDDVIVQAGRSLPPEIVDELE PWDLKSLVPYQDAYMSGFQAEAYQIDLGDGFERAKQEMDSAIRATVAADIGGDHQRINTVRTQFDGITFKHILLPVWISA YKYGDKSYRFLINGSTGEVQGERPWSVAKIAMTVLASIIVLILIALVLKK
Sequences:
>Translated_370_residues MSDPTQQTPNTVTKQFPCGSCGAKLEFHPGAATLKCPYCSHENKIPQSAEEIRELDFYEYFARATEQGDSQEVQTVKCQS CGATSTLQPNISMSHCPFCGTQLQAKAKASRLIKPGAVLPFKIPKNKAMELFRDWLGGLWFAPGGLKEQAARDGGIKGMY IPYWTFDAKSTTWYDGERGEDYYETERYSETDDDGNSVTRTRQVRHTRWYHTSGTVWQNFDDVIVQAGRSLPPEIVDELE PWDLKSLVPYQDAYMSGFQAEAYQIDLGDGFERAKQEMDSAIRATVAADIGGDHQRINTVRTQFDGITFKHILLPVWISA YKYGDKSYRFLINGSTGEVQGERPWSVAKIAMTVLASIIVLILIALVLKK >Mature_369_residues SDPTQQTPNTVTKQFPCGSCGAKLEFHPGAATLKCPYCSHENKIPQSAEEIRELDFYEYFARATEQGDSQEVQTVKCQSC GATSTLQPNISMSHCPFCGTQLQAKAKASRLIKPGAVLPFKIPKNKAMELFRDWLGGLWFAPGGLKEQAARDGGIKGMYI PYWTFDAKSTTWYDGERGEDYYETERYSETDDDGNSVTRTRQVRHTRWYHTSGTVWQNFDDVIVQAGRSLPPEIVDELEP WDLKSLVPYQDAYMSGFQAEAYQIDLGDGFERAKQEMDSAIRATVAADIGGDHQRINTVRTQFDGITFKHILLPVWISAY KYGDKSYRFLINGSTGEVQGERPWSVAKIAMTVLASIIVLILIALVLKK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004039 - InterPro: IPR013137 [H]
Pfam domain/function: PF08271 TFIIB_Zn_Ribbon [H]
EC number: NA
Molecular weight: Translated: 41548; Mature: 41417
Theoretical pI: Translated: 5.94; Mature: 5.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDPTQQTPNTVTKQFPCGSCGAKLEFHPGAATLKCPYCSHENKIPQSAEEIRELDFYEY CCCCCCCCCCHHHHCCCCCCCCCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHH FARATEQGDSQEVQTVKCQSCGATSTLQPNISMSHCPFCGTQLQAKAKASRLIKPGAVLP HHHHHCCCCCHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEE FKIPKNKAMELFRDWLGGLWFAPGGLKEQAARDGGIKGMYIPYWTFDAKSTTWYDGERGE EECCCHHHHHHHHHHHCCEEECCCCCHHHHHHCCCCCEEEEEEEEECCCCCEECCCCCCC DYYETERYSETDDDGNSVTRTRQVRHTRWYHTSGTVWQNFDDVIVQAGRSLPPEIVDELE CHHHHHCCCCCCCCCCHHHHHHHHHHHEEEECCCCHHCCHHHHHHHCCCCCCHHHHHCCC PWDLKSLVPYQDAYMSGFQAEAYQIDLGDGFERAKQEMDSAIRATVAADIGGDHQRINTV CCCCHHCCCHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH RTQFDGITFKHILLPVWISAYKYGDKSYRFLINGSTGEVQGERPWSVAKIAMTVLASIIV HHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH LILIALVLKK HHHHHHHHCC >Mature Secondary Structure SDPTQQTPNTVTKQFPCGSCGAKLEFHPGAATLKCPYCSHENKIPQSAEEIRELDFYEY CCCCCCCCCHHHHCCCCCCCCCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHH FARATEQGDSQEVQTVKCQSCGATSTLQPNISMSHCPFCGTQLQAKAKASRLIKPGAVLP HHHHHCCCCCHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEE FKIPKNKAMELFRDWLGGLWFAPGGLKEQAARDGGIKGMYIPYWTFDAKSTTWYDGERGE EECCCHHHHHHHHHHHCCEEECCCCCHHHHHHCCCCCEEEEEEEEECCCCCEECCCCCCC DYYETERYSETDDDGNSVTRTRQVRHTRWYHTSGTVWQNFDDVIVQAGRSLPPEIVDELE CHHHHHCCCCCCCCCCHHHHHHHHHHHEEEECCCCHHCCHHHHHHHCCCCCCHHHHHCCC PWDLKSLVPYQDAYMSGFQAEAYQIDLGDGFERAKQEMDSAIRATVAADIGGDHQRINTV CCCCHHCCCHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH RTQFDGITFKHILLPVWISAYKYGDKSYRFLINGSTGEVQGERPWSVAKIAMTVLASIIV HHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH LILIALVLKK HHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9455482; 9384377 [H]