Click here to switch to the map view.

The map label for this gene is 189424130

Identifier: 189424130

GI number: 189424130

Start: 1105680

End: 1106471

Strand: Reverse

Name: 189424130

Synonym: Glov_1064

Alternate gene names: NA

Gene position: 1106471-1105680 (Counterclockwise)

Preceding gene: 189424131

Following gene: 189424129

Centisome position: 28.24

GC content: 56.19

Gene sequence:

>792_bases
ATGACCAAACTCGCCCTGTTCAGTATTGCGCTGATGCTTCTGATTTCCACTCTGAGCCAGGCAGGACCGGCAGAATCAAT
GCAACAGTTGACCGACCGTGTTACCGCCGGATTCAAGACCGCCCAGCCGGCCCAATGGGCTGAAAATGTCCCCGGTGTAC
GCACCCGGCTTATCACGACCGACAAGGTACTGGCCCTGACCCTGGATGCCTGCGGTTCTCCCAAGGGAAAGGGCGTTGAT
CAAAAACTGATTGATTTTCTGGCAGAGCAGCAGATCCCTGCCACCCTGTTCATCAATGCCCGCTGGATTGATGCCAACCC
GGAGCTGTTCAAACAGCTGGCAGCCAACCCGCTGTTTGAGATAGCCAACCACGGGATGTGGCATAAACCGGCCTCAATCA
ACGGCCGCTCGATCTATGGCATTGACGGCACAAAGAATGCATCCGAACTGGTGCAAGAGATTGAGCTGAATGCCCGCAAG
ATTGAGAAGCTTACCGCCAGGCGGACCAGGTACTATCGCTCCGGCACCGCCTACTACGACGAGTTTGCCGTACAGATTGC
ACAGCTGCTCGGGCATGAGGTCATTGGTTTTTCTGTGCTGGGCGATGCAGGCGCCAGCTACAGTGCAGCCCAGGTCAAGA
CCGCCCTGCTGTCAGCAAAACCCGGTGACATCATCATTGCCCACATGAACCACCCGGAGGCCGGTACCGGTGCAGGTATC
ATCGCTGCCATGCCGGAGCTGAAAAAGCGTGGTTTCACGTTTGTCAAACTATCGGACTACCCGATGAAGTAG

Upstream 100 bases:

>100_bases
GGAAAACATCCCTTATCAGGAGACCCGTGACTACGTGAAAAAGATCGTGGCCTACATGGCGGTCTACCGCTCACTCTACC
GGATTCAATAGGAGAAAGAG

Downstream 100 bases:

>100_bases
GGATCTATGCTGCATATCATCCAAAATGACCCGGACGTCCCCCCCGGCAACCTTGCCGAAAACCTGGAGACCCTGGAAAT
AGCGTTCCGGCTCCATCATC

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: Lipoprotein; Polysaccharide Deacetylase Family Sporulation Protein PdaB; Polysaccharide Deacetylase Domain-Containing Protein; Polysaccharide Deacetylase Protein; Xylanase/Chitin Deacetylase; Polysaccharide Deacetylase Family Protein

Number of amino acids: Translated: 263; Mature: 262

Protein sequence:

>263_residues
MTKLALFSIALMLLISTLSQAGPAESMQQLTDRVTAGFKTAQPAQWAENVPGVRTRLITTDKVLALTLDACGSPKGKGVD
QKLIDFLAEQQIPATLFINARWIDANPELFKQLAANPLFEIANHGMWHKPASINGRSIYGIDGTKNASELVQEIELNARK
IEKLTARRTRYYRSGTAYYDEFAVQIAQLLGHEVIGFSVLGDAGASYSAAQVKTALLSAKPGDIIIAHMNHPEAGTGAGI
IAAMPELKKRGFTFVKLSDYPMK

Sequences:

>Translated_263_residues
MTKLALFSIALMLLISTLSQAGPAESMQQLTDRVTAGFKTAQPAQWAENVPGVRTRLITTDKVLALTLDACGSPKGKGVD
QKLIDFLAEQQIPATLFINARWIDANPELFKQLAANPLFEIANHGMWHKPASINGRSIYGIDGTKNASELVQEIELNARK
IEKLTARRTRYYRSGTAYYDEFAVQIAQLLGHEVIGFSVLGDAGASYSAAQVKTALLSAKPGDIIIAHMNHPEAGTGAGI
IAAMPELKKRGFTFVKLSDYPMK
>Mature_262_residues
TKLALFSIALMLLISTLSQAGPAESMQQLTDRVTAGFKTAQPAQWAENVPGVRTRLITTDKVLALTLDACGSPKGKGVDQ
KLIDFLAEQQIPATLFINARWIDANPELFKQLAANPLFEIANHGMWHKPASINGRSIYGIDGTKNASELVQEIELNARKI
EKLTARRTRYYRSGTAYYDEFAVQIAQLLGHEVIGFSVLGDAGASYSAAQVKTALLSAKPGDIIIAHMNHPEAGTGAGII
AAMPELKKRGFTFVKLSDYPMK

Specific function: Unknown

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28573; Mature: 28442

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKLALFSIALMLLISTLSQAGPAESMQQLTDRVTAGFKTAQPAQWAENVPGVRTRLITT
CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCEEEEEEC
DKVLALTLDACGSPKGKGVDQKLIDFLAEQQIPATLFINARWIDANPELFKQLAANPLFE
CCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEECCCHHHHHHHHCCHHHH
IANHGMWHKPASINGRSIYGIDGTKNASELVQEIELNARKIEKLTARRTRYYRSGTAYYD
HHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
EFAVQIAQLLGHEVIGFSVLGDAGASYSAAQVKTALLSAKPGDIIIAHMNHPEAGTGAGI
HHHHHHHHHHCCHHHEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHH
IAAMPELKKRGFTFVKLSDYPMK
HHHCHHHHHCCCEEEEECCCCCC
>Mature Secondary Structure 
TKLALFSIALMLLISTLSQAGPAESMQQLTDRVTAGFKTAQPAQWAENVPGVRTRLITT
CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCEEEEEEC
DKVLALTLDACGSPKGKGVDQKLIDFLAEQQIPATLFINARWIDANPELFKQLAANPLFE
CCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEECCCHHHHHHHHCCHHHH
IANHGMWHKPASINGRSIYGIDGTKNASELVQEIELNARKIEKLTARRTRYYRSGTAYYD
HHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
EFAVQIAQLLGHEVIGFSVLGDAGASYSAAQVKTALLSAKPGDIIIAHMNHPEAGTGAGI
HHHHHHHHHHCCHHHEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHH
IAAMPELKKRGFTFVKLSDYPMK
HHHCHHHHHCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA