| Definition | Geobacter lovleyi SZ chromosome, complete genome. |
|---|---|
| Accession | NC_010814 |
| Length | 3,917,761 |
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The map label for this gene is selA [H]
Identifier: 189423940
GI number: 189423940
Start: 897974
End: 899380
Strand: Reverse
Name: selA [H]
Synonym: Glov_0873
Alternate gene names: 189423940
Gene position: 899380-897974 (Counterclockwise)
Preceding gene: 189423941
Following gene: 189423939
Centisome position: 22.96
GC content: 62.05
Gene sequence:
>1407_bases ATGAGCGGAGCATCACAGGATACCAGACGCAAGCTCCCCAAAATGGACAAGGTACTGTCCTGGCCCGAGATCGCTTCTCT GCGGTCACTTACCAGCCATGTCGGCCTGAAACAGGCGGTCCGCAACGTGCTTGACCAACTGCGCAGCTCACTTGCCGTCA ACCCTGCAACCGACCTCACCCCCGTCTCAATCAGCCATCTGGTACGCAATCAGATCCGTATTGCCGAAACACCCAGCCTG CGACGGGTGATTAACGGTAGCGGCGTGGTGGTACATACCAACCTGGGACGTTCACCACTGGCCCGGGCAGCAGAGGCTGC GCTGCACGATACGGCCTGGGGCTACAGCAACCTTGAGTTTGATCTGGAGCGGGGAGAGCGGGGGGAACGCTACGCCCACG TTGAAAACCTGATCTGCGAACTGACCGGTGCTGAGGCGGCCCTGGTGGTCAACAACAATGCCGCCGCCGTCATGCTGGCC CTCTCAAGCCTGGCAGCAGGACAGGAGGTGATCGTCTCCCGCGGAGAACTGGTCGAAATCGGTGGTTCCTTCAGAATTCC CGATGTAATGCGCCAGAGCGGCGCCGGTCTGGTTGAGGTAGGCACCACCAACCGGACCCACCCCCGCGACTATATCGGGG CGATCACCGAGCAGACCGCCCTGCTCTTGAAGGTCCACACCAGCAACTTTGCCGTGGTCGGCTTTACGGCAGAGGTCAAT ACCGAAACCATGGTGCGGATCGGACAGGAAGCGGGTGTGCCGACCATGGTGGATGCCGGAAGTGGATGCCTGATTGATCT TGCCCGCTTTGGCATCTGCGGCGAAGCCACGGTCCAGCAGCATCTCCAGGCAGGAGCCGACATCGTTACCTTCAGCGGCG ACAAGCTGCTGGGCGGGCCGCAGGCAGGCCTGATTGCCGGCCGTCGCGACCTGGTTGAAAAGATGAAGCGGCATCAGCTT TTGCGGGCCTTGAGGATCGACAAACTGACTCTGGCGGCGCTTGAGGCGACCCTGCGCCTCTACCGCGATGAACGGGTGGC ACTGACCGAGATCCCGACCCTGCGGATGCTGACCATGCCGATGGATGTACTCGCCAGTCAGGCACGCCGGATGCTGCGGC GCCTGCGCGCTCTCCTGCCCGAGCAGTTCACCCTGACCCTGCAGGATGGCTTCTCAAGCCCTGGCGGTGGTTCATACCCG CTTTTGCAGCTCCCCAGCCGCCTGATTGAAGTCAGCGTTGACGGGCTGCCGCCCAATCGCCTTGAAGAGCTGCTGCGCAC CACCACCCCGCCTGTGGTGGGCCGGCTTCAGAAGGACCGTTTTCTGCTGGATGTGCGCACCCTGAGCGACAACGACATCC CCTTCCTGGCCTCAGCCTTCTGCCAGGCCCTTGAGCTGACCTTATGA
Upstream 100 bases:
>100_bases TGAGCTGCTGGTGCGCAAAAACGCCGAATACGGCGGCAAGGTATTGCTGGATGAAACCGCCTGCCAGCCGGGCGAGGCGA TGGATCTCTAGGGGGCTGCC
Downstream 100 bases:
>100_bases ACAAAACGCGTGCCTTTGCCTTGATTCCCGCCGCCGGAATGGGAAAACGGATGGGAGCCTCCATGAACAAGCAGTACCTG CAACTGGGAGGCATACCGAT
Product: selenocysteine synthase
Products: NA
Alternate protein names: Selenocysteine synthase; Sec synthase; Selenocysteinyl-tRNA(Sec) synthase [H]
Number of amino acids: Translated: 468; Mature: 467
Protein sequence:
>468_residues MSGASQDTRRKLPKMDKVLSWPEIASLRSLTSHVGLKQAVRNVLDQLRSSLAVNPATDLTPVSISHLVRNQIRIAETPSL RRVINGSGVVVHTNLGRSPLARAAEAALHDTAWGYSNLEFDLERGERGERYAHVENLICELTGAEAALVVNNNAAAVMLA LSSLAAGQEVIVSRGELVEIGGSFRIPDVMRQSGAGLVEVGTTNRTHPRDYIGAITEQTALLLKVHTSNFAVVGFTAEVN TETMVRIGQEAGVPTMVDAGSGCLIDLARFGICGEATVQQHLQAGADIVTFSGDKLLGGPQAGLIAGRRDLVEKMKRHQL LRALRIDKLTLAALEATLRLYRDERVALTEIPTLRMLTMPMDVLASQARRMLRRLRALLPEQFTLTLQDGFSSPGGGSYP LLQLPSRLIEVSVDGLPPNRLEELLRTTTPPVVGRLQKDRFLLDVRTLSDNDIPFLASAFCQALELTL
Sequences:
>Translated_468_residues MSGASQDTRRKLPKMDKVLSWPEIASLRSLTSHVGLKQAVRNVLDQLRSSLAVNPATDLTPVSISHLVRNQIRIAETPSL RRVINGSGVVVHTNLGRSPLARAAEAALHDTAWGYSNLEFDLERGERGERYAHVENLICELTGAEAALVVNNNAAAVMLA LSSLAAGQEVIVSRGELVEIGGSFRIPDVMRQSGAGLVEVGTTNRTHPRDYIGAITEQTALLLKVHTSNFAVVGFTAEVN TETMVRIGQEAGVPTMVDAGSGCLIDLARFGICGEATVQQHLQAGADIVTFSGDKLLGGPQAGLIAGRRDLVEKMKRHQL LRALRIDKLTLAALEATLRLYRDERVALTEIPTLRMLTMPMDVLASQARRMLRRLRALLPEQFTLTLQDGFSSPGGGSYP LLQLPSRLIEVSVDGLPPNRLEELLRTTTPPVVGRLQKDRFLLDVRTLSDNDIPFLASAFCQALELTL >Mature_467_residues SGASQDTRRKLPKMDKVLSWPEIASLRSLTSHVGLKQAVRNVLDQLRSSLAVNPATDLTPVSISHLVRNQIRIAETPSLR RVINGSGVVVHTNLGRSPLARAAEAALHDTAWGYSNLEFDLERGERGERYAHVENLICELTGAEAALVVNNNAAAVMLAL SSLAAGQEVIVSRGELVEIGGSFRIPDVMRQSGAGLVEVGTTNRTHPRDYIGAITEQTALLLKVHTSNFAVVGFTAEVNT ETMVRIGQEAGVPTMVDAGSGCLIDLARFGICGEATVQQHLQAGADIVTFSGDKLLGGPQAGLIAGRRDLVEKMKRHQLL RALRIDKLTLAALEATLRLYRDERVALTEIPTLRMLTMPMDVLASQARRMLRRLRALLPEQFTLTLQDGFSSPGGGSYPL LQLPSRLIEVSVDGLPPNRLEELLRTTTPPVVGRLQKDRFLLDVRTLSDNDIPFLASAFCQALELTL
Specific function: Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis [H]
COG id: COG1921
COG function: function code E; Selenocysteine synthase [seryl-tRNASer selenium transferase]
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the selA family [H]
Homologues:
Organism=Escherichia coli, GI2367248, Length=454, Percent_Identity=42.9515418502203, Blast_Score=325, Evalue=3e-90,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR018319 - InterPro: IPR004534 [H]
Pfam domain/function: PF03841 SelA [H]
EC number: =2.9.1.1 [H]
Molecular weight: Translated: 50830; Mature: 50699
Theoretical pI: Translated: 8.02; Mature: 8.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGASQDTRRKLPKMDKVLSWPEIASLRSLTSHVGLKQAVRNVLDQLRSSLAVNPATDLT CCCCCCHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC PVSISHLVRNQIRIAETPSLRRVINGSGVVVHTNLGRSPLARAAEAALHDTAWGYSNLEF CHHHHHHHHHCEEECCCCHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCEE DLERGERGERYAHVENLICELTGAEAALVVNNNAAAVMLALSSLAAGQEVIVSRGELVEI EECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCHHHHHCCCCEEEE GGSFRIPDVMRQSGAGLVEVGTTNRTHPRDYIGAITEQTALLLKVHTSNFAVVGFTAEVN CCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHCEEEEEEEECCCEEEEEEEEECC TETMVRIGQEAGVPTMVDAGSGCLIDLARFGICGEATVQQHLQAGADIVTFSGDKLLGGP CHHHHHHHHHCCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHCCCCEEEECCCCCCCCC QAGLIAGRRDLVEKMKRHQLLRALRIDKLTLAALEATLRLYRDERVALTEIPTLRMLTMP CCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHCC MDVLASQARRMLRRLRALLPEQFTLTLQDGFSSPGGGSYPLLQLPSRLIEVSVDGLPPNR HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHEEEECCCCHHH LEELLRTTTPPVVGRLQKDRFLLDVRTLSDNDIPFLASAFCQALELTL HHHHHHHCCCHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCC >Mature Secondary Structure SGASQDTRRKLPKMDKVLSWPEIASLRSLTSHVGLKQAVRNVLDQLRSSLAVNPATDLT CCCCCHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC PVSISHLVRNQIRIAETPSLRRVINGSGVVVHTNLGRSPLARAAEAALHDTAWGYSNLEF CHHHHHHHHHCEEECCCCHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCEE DLERGERGERYAHVENLICELTGAEAALVVNNNAAAVMLALSSLAAGQEVIVSRGELVEI EECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCHHHHHCCCCEEEE GGSFRIPDVMRQSGAGLVEVGTTNRTHPRDYIGAITEQTALLLKVHTSNFAVVGFTAEVN CCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHCEEEEEEEECCCEEEEEEEEECC TETMVRIGQEAGVPTMVDAGSGCLIDLARFGICGEATVQQHLQAGADIVTFSGDKLLGGP CHHHHHHHHHCCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHCCCCEEEECCCCCCCCC QAGLIAGRRDLVEKMKRHQLLRALRIDKLTLAALEATLRLYRDERVALTEIPTLRMLTMP CCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHCC MDVLASQARRMLRRLRALLPEQFTLTLQDGFSSPGGGSYPLLQLPSRLIEVSVDGLPPNR HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHEEEECCCCHHH LEELLRTTTPPVVGRLQKDRFLLDVRTLSDNDIPFLASAFCQALELTL HHHHHHHCCCHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA