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The map label for this gene is ydaM [H]

Identifier: 189423670

GI number: 189423670

Start: 592165

End: 594174

Strand: Reverse

Name: ydaM [H]

Synonym: Glov_0600

Alternate gene names: 189423670

Gene position: 594174-592165 (Counterclockwise)

Preceding gene: 189423671

Following gene: 189423669

Centisome position: 15.17

GC content: 59.9

Gene sequence:

>2010_bases
ATGACGCCGGGCAGCAGCGTGGATAGGCAGCTCAGCCAACGAACCGGCCAGCACTGGCTTGCGCTGATCGTCGCCCTGGC
CCTGATCGGCAGTATCATCGCCTACAACCTGGCCACCATGCGCCATCGGACCATCAGCCAGGAAAACCAGCGGCTGATGA
CCCAGGCCAGGGTAATCGGTCAGAATATCCAGCGTCAGCTTGAAGCAACCAGCCGGGCCCTGAAAGGGGTGATCAGCGAT
CTGCCCGGATTGCAGGGCTCCCAAAACCTGGCCCAGGCCAACAAGCGCCTGAGTGTGCTGGCCGATGCCATGCCCGGTAT
ACGCACCCTGTTTTTTACTGATACCAAGGGAAACATTCTGGCTGCCAACCGCCCGGAACTGATCGGACGCAATGTTGCCG
GCCGGCAGTATTTCAGTGAGCCGCAGCAGCACCCCAATCCCGATACGCTCTACATCTCGCCCCCCTTCAAATCGGTGCTG
AACGCCTATGTTTTCGACATTACCAGAATGATACCCGGACCGGATGGCCGTTTTGCCGGGATTGTCACCGCCGGGGTCGA
CCCCGACTACTTCGAGGTGATCCTGCAGTCAACCCTCTATGCCCCGGATATGTGGAACACCATCAACCACGGTGATGGCA
TCCGTTTCATGACCATGCCGTACCGTGAAGGGCAGGCCGGCAAAAACCTGGCCGTACCCGGTTCCCTGTTTACCCGCCAC
AAAGAGAGCGGCCAACCGGAAAATATCTTTACCGACACCGCCTATGCCACCGGCGAATACCGCAAGGTGGCCCTCTTGAC
CCTGCAGCCAAAAGAACTGCAGATGGACAAACCGCTGGTGGTGATCATCAGCCGCAACCCGGACGCAATCATGAAGAACT
GGAAGAATGAGGCGATCTTCCAGGGGCTGCTGTTTCTAATGACCTGCATCGGCAGTTCAGCCGCTCTGTCCCTGCTGCAC
CGGCGTCAGGCGTTGTTTGAGCAGAAGGCCCAACGGGCAGAGGCGATGGTACAGATCCGCTACCAGCTGCTGGAATATGC
CACCATGCATACTGTTGATGAACTGCTGCAGTACGCCCTGGATGAGGTTTGCCGGATCAGTGACAGCCCGGTGGGATTCT
ATCACTTTGTTGACCCGGACCAGCAGGCCCTGACCCTGCAGGCCTGGTCCACCCGCACCCTGCAGGAGTTCTGCAAGGCT
GAAGGACACGGCATGCACTACGGCGTTGACCAGGCCGGTGTCTGGGCCGAGTGCGTCCAGACCCGCGCCCCGGCAATTCA
CAACGACTATGCCGCTCTGCCCAACAAAAAGGGACTGCCCCCCGGCCATGCGCCGGTCATCCGGGAGCTGGTGGTACCGG
TGATCCGGGATGAACGGATTGTGGCGGTGCTGGGGGTGGGCAACAAGGGCAATAATTACACCACCAGAGATGCCGAAGAG
GTCGCCTACCTGGCTGACGTGACCTGGGAGATCATCGACAGCCGCCGGGCCCAGCAGGAATTGAAACATGCCAACGAACT
GCTGGCAACCGAGGCCCGGATCGATTTTCTGACCGGCATTTACAACCGCCGGATGTTTGACGGTCTGCTGGTGGCCGAGA
CCGCCCGTGCCTGCCGCTATAACTCTCCCTTGTCGCTGATCATGCTGGATCTCGATCACTTCAAGCAGATCAACGACACC
CAGGGGCATGCCGCCGGGGACCATGTGCTGCAGAAGGTTGCCGAACTGATTTCCGGCAGGATCAGGAGCCACGACATCTT
CAGCCGCTGGGGCGGCGAAGAGTTTGTGATCCTGACCCCCAAAAACGACACAGCCCAGGCTGCGGTGCTGGCTGAGATCC
TGCGGGACATGATCGAGCAGTATGACTTCGGCAACGGCCTGCGGCTCACCTGCAGCTTCGGGGTTACCCGGCACATCTGC
GGAGAACCGGCAGAGGTCTTTATCGAACGCGCCGATACCGCGCTCTACCAGGCCAAACATAACGGCCGCAACCGGGTGGA
AACGGCCTAA

Upstream 100 bases:

>100_bases
ACAACCGGCATCAGACCATGGAACAACTGGTGATCGAGTGCGAAGGGTTGCTGCAGGGCAGCCAGTCGCAGCGGACCGTT
AACCAGTGCATCGGTTTTGC

Downstream 100 bases:

>100_bases
CCGTTTGCATAATCGTGAATCTATGCTACAGAAGAATCTGTACGGCTACCGCGCAGTGAGGGAAACCCATGAAACGTAGC
ATCTGTACCATAGCATTCCT

Product: GAF sensor-containing diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 669; Mature: 668

Protein sequence:

>669_residues
MTPGSSVDRQLSQRTGQHWLALIVALALIGSIIAYNLATMRHRTISQENQRLMTQARVIGQNIQRQLEATSRALKGVISD
LPGLQGSQNLAQANKRLSVLADAMPGIRTLFFTDTKGNILAANRPELIGRNVAGRQYFSEPQQHPNPDTLYISPPFKSVL
NAYVFDITRMIPGPDGRFAGIVTAGVDPDYFEVILQSTLYAPDMWNTINHGDGIRFMTMPYREGQAGKNLAVPGSLFTRH
KESGQPENIFTDTAYATGEYRKVALLTLQPKELQMDKPLVVIISRNPDAIMKNWKNEAIFQGLLFLMTCIGSSAALSLLH
RRQALFEQKAQRAEAMVQIRYQLLEYATMHTVDELLQYALDEVCRISDSPVGFYHFVDPDQQALTLQAWSTRTLQEFCKA
EGHGMHYGVDQAGVWAECVQTRAPAIHNDYAALPNKKGLPPGHAPVIRELVVPVIRDERIVAVLGVGNKGNNYTTRDAEE
VAYLADVTWEIIDSRRAQQELKHANELLATEARIDFLTGIYNRRMFDGLLVAETARACRYNSPLSLIMLDLDHFKQINDT
QGHAAGDHVLQKVAELISGRIRSHDIFSRWGGEEFVILTPKNDTAQAAVLAEILRDMIEQYDFGNGLRLTCSFGVTRHIC
GEPAEVFIERADTALYQAKHNGRNRVETA

Sequences:

>Translated_669_residues
MTPGSSVDRQLSQRTGQHWLALIVALALIGSIIAYNLATMRHRTISQENQRLMTQARVIGQNIQRQLEATSRALKGVISD
LPGLQGSQNLAQANKRLSVLADAMPGIRTLFFTDTKGNILAANRPELIGRNVAGRQYFSEPQQHPNPDTLYISPPFKSVL
NAYVFDITRMIPGPDGRFAGIVTAGVDPDYFEVILQSTLYAPDMWNTINHGDGIRFMTMPYREGQAGKNLAVPGSLFTRH
KESGQPENIFTDTAYATGEYRKVALLTLQPKELQMDKPLVVIISRNPDAIMKNWKNEAIFQGLLFLMTCIGSSAALSLLH
RRQALFEQKAQRAEAMVQIRYQLLEYATMHTVDELLQYALDEVCRISDSPVGFYHFVDPDQQALTLQAWSTRTLQEFCKA
EGHGMHYGVDQAGVWAECVQTRAPAIHNDYAALPNKKGLPPGHAPVIRELVVPVIRDERIVAVLGVGNKGNNYTTRDAEE
VAYLADVTWEIIDSRRAQQELKHANELLATEARIDFLTGIYNRRMFDGLLVAETARACRYNSPLSLIMLDLDHFKQINDT
QGHAAGDHVLQKVAELISGRIRSHDIFSRWGGEEFVILTPKNDTAQAAVLAEILRDMIEQYDFGNGLRLTCSFGVTRHIC
GEPAEVFIERADTALYQAKHNGRNRVETA
>Mature_668_residues
TPGSSVDRQLSQRTGQHWLALIVALALIGSIIAYNLATMRHRTISQENQRLMTQARVIGQNIQRQLEATSRALKGVISDL
PGLQGSQNLAQANKRLSVLADAMPGIRTLFFTDTKGNILAANRPELIGRNVAGRQYFSEPQQHPNPDTLYISPPFKSVLN
AYVFDITRMIPGPDGRFAGIVTAGVDPDYFEVILQSTLYAPDMWNTINHGDGIRFMTMPYREGQAGKNLAVPGSLFTRHK
ESGQPENIFTDTAYATGEYRKVALLTLQPKELQMDKPLVVIISRNPDAIMKNWKNEAIFQGLLFLMTCIGSSAALSLLHR
RQALFEQKAQRAEAMVQIRYQLLEYATMHTVDELLQYALDEVCRISDSPVGFYHFVDPDQQALTLQAWSTRTLQEFCKAE
GHGMHYGVDQAGVWAECVQTRAPAIHNDYAALPNKKGLPPGHAPVIRELVVPVIRDERIVAVLGVGNKGNNYTTRDAEEV
AYLADVTWEIIDSRRAQQELKHANELLATEARIDFLTGIYNRRMFDGLLVAETARACRYNSPLSLIMLDLDHFKQINDTQ
GHAAGDHVLQKVAELISGRIRSHDIFSRWGGEEFVILTPKNDTAQAAVLAEILRDMIEQYDFGNGLRLTCSFGVTRHICG
EPAEVFIERADTALYQAKHNGRNRVETA

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=183, Percent_Identity=36.0655737704918, Blast_Score=116, Evalue=4e-27,
Organism=Escherichia coli, GI145693134, Length=161, Percent_Identity=37.888198757764, Blast_Score=108, Evalue=8e-25,
Organism=Escherichia coli, GI1787262, Length=204, Percent_Identity=34.3137254901961, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI87082007, Length=192, Percent_Identity=36.4583333333333, Blast_Score=99, Evalue=1e-21,
Organism=Escherichia coli, GI1786584, Length=187, Percent_Identity=32.620320855615, Blast_Score=96, Evalue=5e-21,
Organism=Escherichia coli, GI1787816, Length=163, Percent_Identity=33.7423312883436, Blast_Score=94, Evalue=4e-20,
Organism=Escherichia coli, GI1787802, Length=170, Percent_Identity=34.1176470588235, Blast_Score=91, Evalue=3e-19,
Organism=Escherichia coli, GI1788381, Length=185, Percent_Identity=32.4324324324324, Blast_Score=87, Evalue=4e-18,
Organism=Escherichia coli, GI1788085, Length=205, Percent_Identity=32.1951219512195, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1787541, Length=181, Percent_Identity=32.5966850828729, Blast_Score=77, Evalue=5e-15,
Organism=Escherichia coli, GI87081977, Length=254, Percent_Identity=26.3779527559055, Blast_Score=70, Evalue=5e-13,
Organism=Escherichia coli, GI1788956, Length=170, Percent_Identity=34.7058823529412, Blast_Score=66, Evalue=7e-12,
Organism=Escherichia coli, GI87081974, Length=98, Percent_Identity=36.734693877551, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 74751; Mature: 74620

Theoretical pI: Translated: 6.93; Mature: 6.93

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPGSSVDRQLSQRTGQHWLALIVALALIGSIIAYNLATMRHRTISQENQRLMTQARVIG
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QNIQRQLEATSRALKGVISDLPGLQGSQNLAQANKRLSVLADAMPGIRTLFFTDTKGNIL
HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEE
AANRPELIGRNVAGRQYFSEPQQHPNPDTLYISPPFKSVLNAYVFDITRMIPGPDGRFAG
ECCCCHHHCCCCCCHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCEEE
IVTAGVDPDYFEVILQSTLYAPDMWNTINHGDGIRFMTMPYREGQAGKNLAVPGSLFTRH
EEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHC
KESGQPENIFTDTAYATGEYRKVALLTLQPKELQMDKPLVVIISRNPDAIMKNWKNEAIF
CCCCCCCCCCCCCCCCCCCCEEEEEEEECCHHHCCCCCEEEEEECCCHHHHHHCCHHHHH
QGLLFLMTCIGSSAALSLLHRRQALFEQKAQRAEAMVQIRYQLLEYATMHTVDELLQYAL
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DEVCRISDSPVGFYHFVDPDQQALTLQAWSTRTLQEFCKAEGHGMHYGVDQAGVWAECVQ
HHHHHCCCCCCEEEEECCCCCCEEEEEHHCHHHHHHHHHCCCCCCEECCCCCHHHHHHHH
TRAPAIHNDYAALPNKKGLPPGHAPVIRELVVPVIRDERIVAVLGVGNKGNNYTTRDAEE
HCCCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHH
VAYLADVTWEIIDSRRAQQELKHANELLATEARIDFLTGIYNRRMFDGLLVAETARACRY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NSPLSLIMLDLDHFKQINDTQGHAAGDHVLQKVAELISGRIRSHDIFSRWGGEEFVILTP
CCCCEEEEEEHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHCCCCEEEEEEC
KNDTAQAAVLAEILRDMIEQYDFGNGLRLTCSFGVTRHICGEPAEVFIERADTALYQAKH
CCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHCCCHHHHHHHHHHHHHHHHHH
NGRNRVETA
CCCCCCCCC
>Mature Secondary Structure 
TPGSSVDRQLSQRTGQHWLALIVALALIGSIIAYNLATMRHRTISQENQRLMTQARVIG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QNIQRQLEATSRALKGVISDLPGLQGSQNLAQANKRLSVLADAMPGIRTLFFTDTKGNIL
HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEE
AANRPELIGRNVAGRQYFSEPQQHPNPDTLYISPPFKSVLNAYVFDITRMIPGPDGRFAG
ECCCCHHHCCCCCCHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCEEE
IVTAGVDPDYFEVILQSTLYAPDMWNTINHGDGIRFMTMPYREGQAGKNLAVPGSLFTRH
EEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHC
KESGQPENIFTDTAYATGEYRKVALLTLQPKELQMDKPLVVIISRNPDAIMKNWKNEAIF
CCCCCCCCCCCCCCCCCCCCEEEEEEEECCHHHCCCCCEEEEEECCCHHHHHHCCHHHHH
QGLLFLMTCIGSSAALSLLHRRQALFEQKAQRAEAMVQIRYQLLEYATMHTVDELLQYAL
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DEVCRISDSPVGFYHFVDPDQQALTLQAWSTRTLQEFCKAEGHGMHYGVDQAGVWAECVQ
HHHHHCCCCCCEEEEECCCCCCEEEEEHHCHHHHHHHHHCCCCCCEECCCCCHHHHHHHH
TRAPAIHNDYAALPNKKGLPPGHAPVIRELVVPVIRDERIVAVLGVGNKGNNYTTRDAEE
HCCCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHH
VAYLADVTWEIIDSRRAQQELKHANELLATEARIDFLTGIYNRRMFDGLLVAETARACRY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NSPLSLIMLDLDHFKQINDTQGHAAGDHVLQKVAELISGRIRSHDIFSRWGGEEFVILTP
CCCCEEEEEEHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHCCCCEEEEEEC
KNDTAQAAVLAEILRDMIEQYDFGNGLRLTCSFGVTRHICGEPAEVFIERADTALYQAKH
CCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHCCCHHHHHHHHHHHHHHHHHH
NGRNRVETA
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]