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The map label for this gene is ydeM [C]

Identifier: 189423645

GI number: 189423645

Start: 557490

End: 558794

Strand: Reverse

Name: ydeM [C]

Synonym: Glov_0575

Alternate gene names: 189423645

Gene position: 558794-557490 (Counterclockwise)

Preceding gene: 189423649

Following gene: 189423642

Centisome position: 14.26

GC content: 57.16

Gene sequence:

>1305_bases
ATGCCGTTTTCCCGCTATGTCATCACATTTCCCGACCCGCAGCGGCCCGGTTTCGTCATCCTCTACTCCACCCGCAAGGG
GTCCGTGGTCAGGGTACCTGAGCAGCTGTTGACCTCCATTGCAAACAACACCCTTTCCCCTGAAGAACGCGCCACCCTGC
AGCAGCTTCAGCTCTGGACCGATGACCTTGAGGCTGAGCGTAGCAAAATGGCAGCCATTATTGATCACACCAATGCCCAT
ACCCCGCTCTTTTCCGCCACGGTGGTACTGACCCTGGCCTGCAACCTGGCTTGTCCCTACTGTTTTGAGGAGCCGTTCCG
GGACGGCCAGGAGATGAGTGAGGAAACCGGCAGAATTCTGGTTGATTACCTCATCAGAGAGCAGCTTGATCAGGGGCGTA
ATGTTGAACTACGTTTTTACGGCGGTGAGCCGCTGATGGCAACCACGCGACTGAAGGGAATTGCCACCCCGCTGCTGGCA
GCGGCTGCAAACCGAGGTAGAACCTTTTCATTCAGCCTGGTTACCAACGCCACCCTGCTGACACGGGCTGTGGTGGAAGA
GCTGCTGCCCCTTGGCCTGAAGAGTGCCGTCATTACCCTGGACGGCCCGCCGGAGACTCACGACCGGCAGCGTCCGTTTG
TATCAGGCAAGGGAAGTTTCAAGACCATCATCGACAATCTCACAGCGGTGTACGATCTGGTCACCATCAAACCGGGTGGT
AACTTTACCCGCGACAATTACCGCCGTTTCCCGGAAATGCTGGACCTGCTGCTGGAGGCCGGTCTTGATCCGGCGCAACT
GGGACCGGTGCAATTTTCGCCGATCCACCCCAAATCCGGCCTGTTTGATCCCCATGCTGCAGCCTGTGTCCTTGCCAACG
AACCGTGGCTGATTGAGGCAAACCTGTTTCTGAGGGAAGAAATACTGCGGCGAGGTTTTACGGTGGAAAAGCTGCAGATG
GGCATCTGCATGATCGATCTGGAGCAGACCCTGGTGGTCAACTATGACGGCAGCCTGTACAAATGCCCAAGCCTGATGGG
CTGGCCGGAGTTCTGCGTCGGCACCTTGGCCGACGGGTTGGGTGATTACCACGCATCACACCGGCTGGATATCTGGAAGA
ATGATGAATGCCTGGACTGCGCCTACCTGCCGCTCTGTTTTGGCGGCTGCCGACTACTGACGCTGCAAAAAAATGGTGCT
ATTGACACGGTGGATTGCCATCGTGCCATGCTGGACGCCTCGCTGGAACGGTTGGTACTGCAGGATTTGGGGGTACGGAT
GTCTGATTTGCAACCAGCCTGCTGA

Upstream 100 bases:

>100_bases
GCTGCACAGGCGGTACCAGCAGTACCCGCAAGTAAGTAACAACGGAAGTTATGTGAATGGGGAGTTTTGCTCCCCATTCA
CATTCTCAGGAGACTATTCC

Downstream 100 bases:

>100_bases
CGGAAATAACACTACTACCAGAAAAGCTTTTAGCCGCCAAAGAATGCAGAGATCACAAAAAACAATCGTTCATATCCACC
AAGGGCACGAAGTTTCACGA

Product: radical SAM protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 434; Mature: 433

Protein sequence:

>434_residues
MPFSRYVITFPDPQRPGFVILYSTRKGSVVRVPEQLLTSIANNTLSPEERATLQQLQLWTDDLEAERSKMAAIIDHTNAH
TPLFSATVVLTLACNLACPYCFEEPFRDGQEMSEETGRILVDYLIREQLDQGRNVELRFYGGEPLMATTRLKGIATPLLA
AAANRGRTFSFSLVTNATLLTRAVVEELLPLGLKSAVITLDGPPETHDRQRPFVSGKGSFKTIIDNLTAVYDLVTIKPGG
NFTRDNYRRFPEMLDLLLEAGLDPAQLGPVQFSPIHPKSGLFDPHAAACVLANEPWLIEANLFLREEILRRGFTVEKLQM
GICMIDLEQTLVVNYDGSLYKCPSLMGWPEFCVGTLADGLGDYHASHRLDIWKNDECLDCAYLPLCFGGCRLLTLQKNGA
IDTVDCHRAMLDASLERLVLQDLGVRMSDLQPAC

Sequences:

>Translated_434_residues
MPFSRYVITFPDPQRPGFVILYSTRKGSVVRVPEQLLTSIANNTLSPEERATLQQLQLWTDDLEAERSKMAAIIDHTNAH
TPLFSATVVLTLACNLACPYCFEEPFRDGQEMSEETGRILVDYLIREQLDQGRNVELRFYGGEPLMATTRLKGIATPLLA
AAANRGRTFSFSLVTNATLLTRAVVEELLPLGLKSAVITLDGPPETHDRQRPFVSGKGSFKTIIDNLTAVYDLVTIKPGG
NFTRDNYRRFPEMLDLLLEAGLDPAQLGPVQFSPIHPKSGLFDPHAAACVLANEPWLIEANLFLREEILRRGFTVEKLQM
GICMIDLEQTLVVNYDGSLYKCPSLMGWPEFCVGTLADGLGDYHASHRLDIWKNDECLDCAYLPLCFGGCRLLTLQKNGA
IDTVDCHRAMLDASLERLVLQDLGVRMSDLQPAC
>Mature_433_residues
PFSRYVITFPDPQRPGFVILYSTRKGSVVRVPEQLLTSIANNTLSPEERATLQQLQLWTDDLEAERSKMAAIIDHTNAHT
PLFSATVVLTLACNLACPYCFEEPFRDGQEMSEETGRILVDYLIREQLDQGRNVELRFYGGEPLMATTRLKGIATPLLAA
AANRGRTFSFSLVTNATLLTRAVVEELLPLGLKSAVITLDGPPETHDRQRPFVSGKGSFKTIIDNLTAVYDLVTIKPGGN
FTRDNYRRFPEMLDLLLEAGLDPAQLGPVQFSPIHPKSGLFDPHAAACVLANEPWLIEANLFLREEILRRGFTVEKLQMG
ICMIDLEQTLVVNYDGSLYKCPSLMGWPEFCVGTLADGLGDYHASHRLDIWKNDECLDCAYLPLCFGGCRLLTLQKNGAI
DTVDCHRAMLDASLERLVLQDLGVRMSDLQPAC

Specific function: Unknown

COG id: COG0641

COG function: function code R; Arylsulfatase regulator (Fe-S oxidoreductase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily. Anaerobic sulfatase-maturating enzyme family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR000385
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 48311; Mature: 48180

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPFSRYVITFPDPQRPGFVILYSTRKGSVVRVPEQLLTSIANNTLSPEERATLQQLQLWT
CCCCCEEEECCCCCCCCEEEEEECCCCCEEECHHHHHHHHHCCCCCCHHHHHHHHHHHHH
DDLEAERSKMAAIIDHTNAHTPLFSATVVLTLACNLACPYCFEEPFRDGQEMSEETGRIL
HHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHH
VDYLIREQLDQGRNVELRFYGGEPLMATTRLKGIATPLLAAAANRGRTFSFSLVTNATLL
HHHHHHHHHCCCCCEEEEEECCCCCEEHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHH
TRAVVEELLPLGLKSAVITLDGPPETHDRQRPFVSGKGSFKTIIDNLTAVYDLVTIKPGG
HHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHEEEEEECCCC
NFTRDNYRRFPEMLDLLLEAGLDPAQLGPVQFSPIHPKSGLFDPHAAACVLANEPWLIEA
CCCHHHHHHHHHHHHHHHHCCCCHHHCCCEEECCCCCCCCCCCCCCCEEEEECCCEEEEC
NLFLREEILRRGFTVEKLQMGICMIDLEQTLVVNYDGSLYKCPSLMGWPEFCVGTLADGL
HHHHHHHHHHCCCCHHHHHCCEEEEEECCEEEEECCCCEEECCCCCCCHHHHHHHHHHHH
GDYHASHRLDIWKNDECLDCAYLPLCFGGCRLLTLQKNGAIDTVDCHRAMLDASLERLVL
HHHCCCCCEEECCCCCCCCHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
QDLGVRMSDLQPAC
HHHCCCCCCCCCCC
>Mature Secondary Structure 
PFSRYVITFPDPQRPGFVILYSTRKGSVVRVPEQLLTSIANNTLSPEERATLQQLQLWT
CCCCEEEECCCCCCCCEEEEEECCCCCEEECHHHHHHHHHCCCCCCHHHHHHHHHHHHH
DDLEAERSKMAAIIDHTNAHTPLFSATVVLTLACNLACPYCFEEPFRDGQEMSEETGRIL
HHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHH
VDYLIREQLDQGRNVELRFYGGEPLMATTRLKGIATPLLAAAANRGRTFSFSLVTNATLL
HHHHHHHHHCCCCCEEEEEECCCCCEEHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHH
TRAVVEELLPLGLKSAVITLDGPPETHDRQRPFVSGKGSFKTIIDNLTAVYDLVTIKPGG
HHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHEEEEEECCCC
NFTRDNYRRFPEMLDLLLEAGLDPAQLGPVQFSPIHPKSGLFDPHAAACVLANEPWLIEA
CCCHHHHHHHHHHHHHHHHCCCCHHHCCCEEECCCCCCCCCCCCCCCEEEEECCCEEEEC
NLFLREEILRRGFTVEKLQMGICMIDLEQTLVVNYDGSLYKCPSLMGWPEFCVGTLADGL
HHHHHHHHHHCCCCHHHHHCCEEEEEECCEEEEECCCCEEECCCCCCCHHHHHHHHHHHH
GDYHASHRLDIWKNDECLDCAYLPLCFGGCRLLTLQKNGAIDTVDCHRAMLDASLERLVL
HHHCCCCCEEECCCCCCCCHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
QDLGVRMSDLQPAC
HHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]